Wall clock time and date at job start Tue Mar 31 2020 11:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.49143 * 2 1 4 4 C 1.53093 * 109.48123 * 120.02962 * 2 1 3 5 5 C 1.53179 * 109.16235 * 62.37222 * 4 2 1 6 6 C 1.53176 * 109.03818 * 56.98189 * 5 4 2 7 7 C 1.53086 * 109.16495 * 303.02046 * 6 5 4 8 8 H 1.09003 * 109.48074 * 297.61672 * 7 6 5 9 9 C 1.52997 * 109.48363 * 177.58976 * 7 6 5 10 10 S 1.81401 * 109.47149 * 179.97438 * 9 7 6 11 11 O 1.42093 * 110.54547 * 291.62539 * 10 9 7 12 12 O 1.42105 * 110.53941 * 68.37879 * 10 9 7 13 13 N 1.65595 * 104.44822 * 179.97438 * 10 9 7 14 14 C 1.47073 * 136.06232 * 269.62992 * 13 10 9 15 15 C 1.53755 * 87.89066 * 152.96329 * 14 13 10 16 16 C 1.50697 * 114.26590 * 139.79356 * 15 14 13 17 17 H 1.08007 * 119.99798 * 266.47593 * 16 15 14 18 18 C 1.37871 * 120.00040 * 86.47875 * 16 15 14 19 19 N 1.31521 * 120.00208 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 120.00126 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.46900 * 59.99453 * 20 18 16 22 22 H 1.48499 * 109.47047 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46975 * 299.99731 * 20 18 16 24 24 C 1.47072 * 136.05444 * 90.00052 * 13 10 9 25 25 O 1.42904 * 109.41726 * 57.60341 * 7 6 5 26 26 H 1.08996 * 109.47217 * 299.97005 * 1 2 3 27 27 H 1.09001 * 109.47211 * 59.97385 * 1 2 3 28 28 H 1.09002 * 109.47526 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47069 * 180.02562 * 3 2 1 30 30 H 1.09000 * 109.47100 * 300.02440 * 3 2 1 31 31 H 1.09001 * 109.46888 * 60.02808 * 3 2 1 32 32 H 1.09001 * 109.52192 * 302.46723 * 4 2 1 33 33 H 1.08999 * 109.57693 * 182.30906 * 4 2 1 34 34 H 1.09004 * 109.54764 * 297.11291 * 5 4 2 35 35 H 1.09006 * 109.54455 * 176.85136 * 5 4 2 36 36 H 1.09000 * 109.52077 * 183.11076 * 6 5 4 37 37 H 1.08999 * 109.56996 * 62.95590 * 6 5 4 38 38 H 1.09002 * 109.47153 * 59.99800 * 9 7 6 39 39 H 1.09001 * 109.46832 * 299.99991 * 9 7 6 40 40 H 1.08994 * 113.46965 * 267.70266 * 14 13 10 41 41 H 1.09007 * 113.46318 * 38.13566 * 14 13 10 42 42 H 1.09004 * 114.39582 * 272.67929 * 15 14 13 43 43 H 0.96993 * 119.99683 * 180.02562 * 19 18 16 44 44 H 1.08996 * 113.46982 * 321.86407 * 24 13 10 45 45 H 1.09006 * 113.46489 * 92.25048 * 24 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0404 1.4423 0.0000 4 6 2.0405 -0.7223 1.2496 5 6 1.5756 -2.1814 1.2121 6 6 2.0763 -2.8323 -0.0809 7 6 1.5645 -2.0286 -1.2791 8 1 0.4749 -2.0552 -1.2959 9 6 2.1098 -2.6374 -2.5724 10 16 1.5025 -1.6852 -3.9920 11 8 0.1015 -1.8628 -4.1489 12 8 2.0830 -0.3882 -4.0075 13 7 2.1608 -2.4423 -5.3094 14 6 3.3960 -2.3137 -6.0973 15 6 3.2564 -3.8028 -6.4538 16 6 3.5999 -4.1322 -7.8836 17 1 2.8222 -4.1634 -8.6324 18 6 4.9069 -4.3940 -8.2358 19 7 5.8540 -4.3556 -7.3240 20 14 5.3329 -4.8017 -10.0084 21 1 4.9457 -3.6666 -10.8841 22 1 6.7940 -5.0408 -10.1239 23 1 4.5975 -6.0224 -10.4260 24 6 1.7646 -3.5351 -6.2104 25 8 2.0065 -0.6743 -1.1664 26 1 -0.3633 0.5133 0.8902 27 1 -0.3634 0.5142 -0.8897 28 1 -0.3634 -1.0277 -0.0005 29 1 3.1305 1.4419 -0.0005 30 1 1.6769 1.9564 -0.8898 31 1 1.6777 1.9561 0.8903 32 1 1.6421 -0.2358 2.1399 33 1 3.1297 -0.6875 1.2721 34 1 0.4866 -2.2180 1.2408 35 1 1.9824 -2.7158 2.0707 36 1 1.7035 -3.8547 -0.1420 37 1 3.1663 -2.8410 -0.0870 38 1 1.7734 -3.6707 -2.6577 39 1 3.1994 -2.6102 -2.5555 40 1 3.2957 -1.6504 -6.9564 41 1 4.2753 -2.0911 -5.4927 42 1 3.7117 -4.4827 -5.7336 43 1 6.7736 -4.5394 -7.5720 44 1 1.2540 -4.3531 -5.7024 45 1 1.2333 -3.1939 -7.0991 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885293975.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:18 Heat of formation + Delta-G solvation = -115.329546 kcal Electronic energy + Delta-G solvation = -25938.557207 eV Core-core repulsion = 22276.247279 eV Total energy + Delta-G solvation = -3662.309928 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.15997 -39.88419 -38.13770 -37.00614 -35.53981 -34.70262 -34.55807 -31.40874 -30.07125 -28.46497 -27.60885 -26.60049 -26.37521 -23.94439 -22.85979 -21.52539 -20.34475 -19.67218 -18.83253 -18.13230 -17.75790 -17.44631 -16.92060 -16.71331 -16.46284 -16.02294 -15.70544 -15.35264 -14.80993 -14.70363 -14.48548 -14.21547 -14.04942 -13.67361 -13.46272 -13.26036 -13.23906 -13.14647 -13.11168 -13.09098 -13.00876 -12.93186 -12.74723 -12.68851 -12.40109 -12.31022 -12.13130 -11.97627 -11.90128 -11.58696 -11.10702 -10.96267 -10.93987 -10.49670 -10.38244 -9.79720 -8.12251 -6.21744 -0.80084 1.49943 1.50877 1.57920 1.68130 2.41803 2.48503 2.83952 3.03858 3.20663 3.41150 3.67760 3.77162 3.79831 3.88773 3.99233 4.07312 4.17395 4.25398 4.32003 4.42967 4.56846 4.58786 4.61995 4.66430 4.74821 4.80536 4.82243 4.83955 4.88000 4.98183 5.00171 5.02525 5.07161 5.11518 5.12213 5.19968 5.31353 5.44967 5.64822 5.86983 5.92790 6.19629 6.32755 6.86969 7.47021 8.97327 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.026473 B = 0.003195 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.443792 B = 8761.585022 C = 8977.473103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.096 3.904 3 C -0.141 4.141 4 C -0.139 4.139 5 C -0.124 4.124 6 C -0.139 4.139 7 C 0.088 3.912 8 H 0.079 0.921 9 C -0.603 4.603 10 S 2.631 3.369 11 O -0.992 6.992 12 O -0.983 6.983 13 N -1.055 6.055 14 C 0.133 3.867 15 C 0.023 3.977 16 C -0.530 4.530 17 H 0.065 0.935 18 C 0.020 3.980 19 N -0.919 5.919 20 Si 0.955 3.045 21 H -0.273 1.273 22 H -0.288 1.288 23 H -0.268 1.268 24 C 0.130 3.870 25 O -0.399 6.399 26 H 0.096 0.904 27 H 0.047 0.953 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.048 0.952 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.072 0.928 38 H 0.173 0.827 39 H 0.147 0.853 40 H 0.061 0.939 41 H 0.051 0.949 42 H 0.055 0.945 43 H 0.263 0.737 44 H 0.082 0.918 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.428 3.536 19.493 21.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.058 3.942 3 C -0.198 4.198 4 C -0.176 4.176 5 C -0.162 4.162 6 C -0.178 4.178 7 C 0.029 3.971 8 H 0.097 0.903 9 C -0.735 4.735 10 S 2.731 3.269 11 O -0.983 6.983 12 O -0.974 6.974 13 N -0.894 5.894 14 C 0.007 3.993 15 C 0.002 3.998 16 C -0.569 4.569 17 H 0.083 0.917 18 C -0.180 4.180 19 N -0.557 5.557 20 Si 0.780 3.220 21 H -0.198 1.198 22 H -0.214 1.214 23 H -0.193 1.193 24 C 0.005 3.995 25 O -0.320 6.320 26 H 0.115 0.885 27 H 0.067 0.933 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.086 0.914 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.114 0.886 37 H 0.091 0.909 38 H 0.191 0.809 39 H 0.165 0.835 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.100 0.900 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.809 4.517 19.536 21.901 hybrid contribution 0.810 -0.539 -0.850 1.292 sum -7.999 3.978 18.686 20.711 Atomic orbital electron populations 1.22565 0.95005 1.03317 1.03616 1.21870 0.93947 0.93301 0.85112 1.21834 1.01851 0.93018 1.03110 1.22180 1.01719 0.96246 0.97483 1.21717 1.01904 0.95304 0.97257 1.22162 1.02231 1.00067 0.93327 1.21863 0.98487 0.83380 0.93361 0.90302 1.30522 1.14365 1.15564 1.13053 1.04058 0.73229 0.74308 0.75274 1.93491 1.31545 1.87224 1.86042 1.93507 1.79260 1.38050 1.86574 1.59938 1.35044 1.52302 1.42118 1.22820 0.83370 1.01313 0.91788 1.20468 0.91143 0.91691 0.96468 1.21332 0.93524 1.47640 0.94407 0.91672 1.25743 0.96529 0.94660 1.01048 1.70041 1.01099 1.49571 1.35005 0.85665 0.76817 0.78973 0.80509 1.19820 1.21350 1.19306 1.22727 0.99040 0.86611 0.91095 1.88085 1.74456 1.23932 1.45477 0.88510 0.93339 0.91277 0.92232 0.93310 0.88160 0.88408 0.91420 0.90427 0.89257 0.88625 0.90883 0.80905 0.83481 0.92112 0.93040 0.92721 0.92761 0.89962 0.90971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.43 7.93 71.98 0.57 -2.86 16 2 C 0.10 2.01 1.11 -10.77 -0.01 2.00 16 3 C -0.14 -2.79 8.85 71.98 0.64 -2.15 16 4 C -0.14 -2.09 4.92 30.69 0.15 -1.94 16 5 C -0.12 -1.69 5.72 30.71 0.18 -1.51 16 6 C -0.14 -2.44 5.42 30.68 0.17 -2.28 16 7 C 0.09 2.14 2.37 30.62 0.07 2.21 16 8 H 0.08 1.80 6.34 -2.39 -0.02 1.78 16 9 C -0.60 -16.02 5.90 71.98 0.42 -15.60 16 10 S 2.63 97.34 5.76 -56.49 -0.33 97.02 16 11 O -0.99 -40.01 18.07 -127.65 -2.31 -42.32 16 12 O -0.98 -43.29 17.40 -123.52 -2.15 -45.44 16 13 N -1.05 -42.26 4.10 -549.34 -2.25 -44.51 16 14 C 0.13 6.02 8.27 83.27 0.69 6.71 16 15 C 0.02 1.09 3.79 -11.12 -0.04 1.04 16 16 C -0.53 -27.16 8.83 25.60 0.23 -26.93 16 17 H 0.07 3.22 7.81 -2.91 -0.02 3.20 16 18 C 0.02 1.06 5.46 84.65 0.46 1.52 16 19 N -0.92 -50.68 13.26 21.45 0.28 -50.39 16 20 Si 0.95 41.42 29.54 68.60 2.03 43.45 16 21 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 22 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 23 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 24 C 0.13 5.14 8.25 83.18 0.69 5.83 16 25 O -0.40 -11.39 8.92 -142.63 -1.27 -12.66 16 26 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.07 1.17 4.98 -2.39 -0.01 1.15 16 29 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 30 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.08 0.92 6.62 -2.38 -0.02 0.90 16 35 H 0.09 0.91 8.14 -2.38 -0.02 0.90 16 36 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.17 3.51 8.14 -2.39 -0.02 3.49 16 39 H 0.15 3.84 8.14 -2.39 -0.02 3.82 16 40 H 0.06 2.83 8.10 -2.39 -0.02 2.81 16 41 H 0.05 2.33 8.14 -2.38 -0.02 2.31 16 42 H 0.05 2.67 8.11 -2.39 -0.02 2.65 16 43 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 44 H 0.08 2.75 8.14 -2.39 -0.02 2.73 16 45 H 0.07 2.83 8.10 -2.38 -0.02 2.81 16 Total: -1.00 -68.89 367.54 -0.83 -69.72 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: 0.95 Total: 19.09 kcal Atomic # 6 Polarization: -38.16 SS G_CDS: 4.21 Total: -33.95 kcal Atomic # 7 Polarization: -92.94 SS G_CDS: -1.97 Total: -94.90 kcal Atomic # 8 Polarization: -94.69 SS G_CDS: -5.73 Total: -100.42 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Atomic # 16 Polarization: 97.34 SS G_CDS: -0.33 Total: 97.02 kcal Total: -68.89 -0.83 -69.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885293975.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.610 kcal (2) G-P(sol) polarization free energy of solvation -68.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds