Wall clock time and date at job start Tue Mar 31 2020 11:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.48015 * 2 1 4 4 C 1.53089 * 109.48047 * 120.02835 * 2 1 3 5 5 C 1.53179 * 109.16436 * 177.59055 * 4 2 1 6 6 C 1.53175 * 109.03545 * 303.01892 * 5 4 2 7 7 C 1.53092 * 109.16238 * 56.97913 * 6 5 4 8 8 H 1.08995 * 109.48367 * 62.38883 * 7 6 5 9 9 C 1.53006 * 109.47899 * 182.41160 * 7 6 5 10 10 S 1.81398 * 109.47130 * 184.97730 * 9 7 6 11 11 O 1.42102 * 110.54414 * 68.37289 * 10 9 7 12 12 O 1.42101 * 110.54277 * 291.62123 * 10 9 7 13 13 N 1.65600 * 104.44906 * 179.97438 * 10 9 7 14 14 C 1.47580 * 134.49049 * 90.00236 * 13 10 9 15 15 C 1.53949 * 86.11873 * 155.35856 * 14 13 10 16 16 C 1.50695 * 113.74240 * 137.95058 * 15 14 13 17 17 H 1.07995 * 120.00496 * 1.92583 * 16 15 14 18 18 C 1.37880 * 119.99572 * 181.92516 * 16 15 14 19 19 N 1.31511 * 120.00327 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99951 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 59.99744 * 20 18 16 22 22 H 1.48503 * 109.47261 * 299.99924 * 20 18 16 23 23 H 1.48500 * 109.47454 * 179.97438 * 20 18 16 24 24 C 1.47812 * 134.45869 * 269.86733 * 13 10 9 25 25 O 1.42903 * 109.47626 * 239.97861 * 2 1 3 26 26 H 1.09007 * 109.47175 * 299.97628 * 1 2 3 27 27 H 1.09002 * 109.47553 * 59.97178 * 1 2 3 28 28 H 1.08997 * 109.47479 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46962 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47659 * 300.02731 * 3 2 1 31 31 H 1.09008 * 109.46759 * 60.02938 * 3 2 1 32 32 H 1.08999 * 109.52514 * 57.68313 * 4 2 1 33 33 H 1.09010 * 109.57186 * 297.52504 * 4 2 1 34 34 H 1.08996 * 109.54440 * 183.14864 * 5 4 2 35 35 H 1.08997 * 109.61339 * 62.92625 * 5 4 2 36 36 H 1.09003 * 109.52239 * 297.07630 * 6 5 4 37 37 H 1.08999 * 109.52509 * 176.88701 * 6 5 4 38 38 H 1.08993 * 109.47049 * 64.97571 * 9 7 6 39 39 H 1.09007 * 109.46841 * 304.97731 * 9 7 6 40 40 H 1.09000 * 113.77172 * 41.05341 * 14 13 10 41 41 H 1.09007 * 113.87004 * 269.67142 * 14 13 10 42 42 H 1.09000 * 113.73924 * 269.15796 * 15 14 13 43 43 H 0.97006 * 119.99995 * 359.97438 * 19 18 16 44 44 H 1.08997 * 113.76932 * 90.37598 * 24 13 10 45 45 H 1.08998 * 113.83346 * 318.91979 * 24 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0405 -0.7222 1.2495 5 6 3.5711 -0.7709 1.2122 6 6 4.0176 -1.4601 -0.0809 7 6 3.4306 -0.7094 -1.2790 8 1 3.8193 0.3088 -1.2960 9 6 3.8226 -1.4268 -2.5724 10 16 3.2532 -0.4589 -3.9971 11 8 3.9839 0.7556 -4.0989 12 8 1.8342 -0.4686 -4.0715 13 7 3.7378 -1.3381 -5.3141 14 6 3.1257 -2.4083 -6.1252 15 6 4.0545 -1.9367 -7.2588 16 6 4.6871 -3.0639 -8.0335 17 1 4.4461 -4.0882 -7.7905 18 6 5.5738 -2.7874 -9.0525 19 7 5.8678 -1.5402 -9.3481 20 14 6.3575 -4.1846 -10.0134 21 1 5.2965 -4.9903 -10.6696 22 1 7.1333 -5.0482 -9.0873 23 1 7.2652 -3.6262 -11.0475 24 6 4.9563 -1.3637 -6.1504 25 8 2.0064 -0.6741 -1.1665 26 1 -0.3634 0.5135 0.8903 27 1 -0.3634 0.5143 -0.8897 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1302 1.4422 -0.0005 30 1 1.6766 1.9565 -0.8897 31 1 1.6773 1.9561 0.8903 32 1 1.6442 -1.7374 1.2710 33 1 1.7148 -0.1851 2.1405 34 1 3.9391 -1.3326 2.0707 35 1 3.9702 0.2430 1.2415 36 1 3.6612 -2.4902 -0.0863 37 1 5.1058 -1.4499 -0.1421 38 1 3.3599 -2.4134 -2.5952 39 1 4.9066 -1.5327 -2.6149 40 1 2.0668 -2.2524 -6.3313 41 1 3.3457 -3.4140 -5.7668 42 1 3.6115 -1.1757 -7.9011 43 1 5.4606 -0.8146 -8.8494 44 1 5.7164 -2.0610 -5.7981 45 1 5.3562 -0.3752 -6.3765 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885293976.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:21 Heat of formation + Delta-G solvation = -101.551813 kcal Electronic energy + Delta-G solvation = -25906.722969 eV Core-core repulsion = 22245.010489 eV Total energy + Delta-G solvation = -3661.712480 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.36040 -38.17567 -36.62703 -35.48945 -34.69736 -33.95739 -32.76629 -30.50415 -28.02798 -27.71691 -26.82184 -25.28648 -24.15560 -23.10008 -22.04209 -20.09704 -19.58111 -18.19338 -17.29337 -16.81553 -16.71153 -16.16275 -15.82292 -15.56354 -15.30016 -14.56082 -14.46956 -13.95813 -13.80680 -13.50315 -13.32750 -13.17891 -12.92385 -12.63326 -12.35483 -12.31675 -12.18661 -12.12604 -11.95175 -11.66973 -11.63731 -11.56310 -11.52033 -11.28585 -11.19090 -11.04474 -10.88443 -10.58898 -10.48299 -10.30668 -10.13597 -9.58175 -9.56105 -8.60150 -8.53038 -8.23445 -6.45703 -4.18870 0.59768 3.05135 3.27479 3.40314 3.41796 3.60621 4.09123 4.34102 4.40872 4.44258 4.46113 4.48085 4.57309 4.69722 4.78789 4.91776 4.97765 5.09140 5.24815 5.25353 5.27885 5.41332 5.43846 5.54771 5.56086 5.60235 5.65182 5.65786 5.71542 5.80056 5.85632 6.01021 6.03762 6.10339 6.16596 6.26456 6.33368 6.61169 6.64150 7.01205 7.33825 7.47210 8.05910 8.31902 8.74877 9.54049 10.93720 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.030255 B = 0.003089 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.247314 B = 9063.086930 C = 9286.198698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.110 3.890 3 C -0.188 4.188 4 C -0.143 4.143 5 C -0.126 4.126 6 C -0.141 4.141 7 C 0.100 3.900 8 H 0.073 0.927 9 C -0.639 4.639 10 S 2.618 3.382 11 O -0.963 6.963 12 O -0.946 6.946 13 N -1.034 6.034 14 C 0.129 3.871 15 C 0.020 3.980 16 C -0.597 4.597 17 H 0.056 0.944 18 C 0.023 3.977 19 N -0.903 5.903 20 Si 1.069 2.931 21 H -0.287 1.287 22 H -0.287 1.287 23 H -0.282 1.282 24 C 0.119 3.881 25 O -0.364 6.364 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.137 0.863 39 H 0.140 0.860 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.055 0.945 43 H 0.272 0.728 44 H 0.075 0.925 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.121 0.912 21.553 22.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.071 3.929 3 C -0.245 4.245 4 C -0.180 4.180 5 C -0.164 4.164 6 C -0.180 4.180 7 C 0.041 3.959 8 H 0.090 0.910 9 C -0.765 4.765 10 S 2.712 3.288 11 O -0.954 6.954 12 O -0.936 6.936 13 N -0.874 5.874 14 C 0.004 3.996 15 C -0.002 4.002 16 C -0.636 4.636 17 H 0.075 0.925 18 C -0.183 4.183 19 N -0.538 5.538 20 Si 0.897 3.103 21 H -0.213 1.213 22 H -0.214 1.214 23 H -0.208 1.208 24 C -0.006 4.006 25 O -0.284 6.284 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.155 0.845 39 H 0.158 0.842 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.093 0.907 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.730 1.455 20.394 20.986 hybrid contribution -0.412 -0.229 2.029 2.083 sum -5.142 1.226 22.422 23.037 Atomic orbital electron populations 1.21771 0.91977 1.03137 1.02743 1.21538 0.95187 0.91133 0.85023 1.22549 1.02097 0.96517 1.03360 1.22199 0.96029 1.01781 0.98011 1.21677 0.95781 1.01280 0.97634 1.22147 1.01244 1.00568 0.94008 1.21602 0.82873 0.98363 0.93086 0.90973 1.30876 1.12502 1.16385 1.16704 1.04822 0.74626 0.75152 0.74177 1.93548 1.74579 1.41683 1.85563 1.93552 1.28143 1.86668 1.85240 1.60501 1.31029 1.53781 1.42119 1.22929 0.98036 0.88957 0.89703 1.20659 0.91914 0.96710 0.90923 1.21877 1.29490 0.92652 1.19557 0.92542 1.25880 0.95273 1.01204 0.95909 1.70791 1.42109 0.99248 1.41615 0.83532 0.76318 0.74212 0.76212 1.21340 1.21395 1.20775 1.23442 0.87492 1.00240 0.89449 1.88100 1.19232 1.77578 1.43517 0.91096 0.91214 0.91633 0.91795 0.91259 0.91102 0.90861 0.90734 0.91175 0.91355 0.90553 0.90494 0.84507 0.84228 0.91509 0.90876 0.92709 0.91710 0.90702 0.91734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.85 37.16 0.33 -1.02 16 2 C 0.11 1.19 1.11 -90.58 -0.10 1.09 16 3 C -0.19 -1.87 7.94 37.16 0.29 -1.57 16 4 C -0.14 -1.22 4.92 -26.59 -0.13 -1.35 16 5 C -0.13 -1.04 5.72 -26.55 -0.15 -1.19 16 6 C -0.14 -1.39 5.42 -26.59 -0.14 -1.54 16 7 C 0.10 1.27 2.31 -26.68 -0.06 1.21 16 8 H 0.07 0.90 6.34 -51.93 -0.33 0.57 16 9 C -0.64 -8.64 5.87 37.16 0.22 -8.42 16 10 S 2.62 47.96 5.79 -107.50 -0.62 47.34 16 11 O -0.96 -20.08 18.02 -57.54 -1.04 -21.12 16 12 O -0.95 -19.72 17.55 -59.90 -1.05 -20.78 16 13 N -1.03 -20.41 4.00 -118.60 -0.47 -20.88 16 14 C 0.13 2.59 8.47 -2.97 -0.03 2.57 16 15 C 0.02 0.47 3.07 -90.85 -0.28 0.19 16 16 C -0.60 -15.44 8.77 -34.44 -0.30 -15.74 16 17 H 0.06 1.42 7.81 -52.49 -0.41 1.01 16 18 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 19 N -0.90 -25.86 13.65 55.43 0.76 -25.11 16 20 Si 1.07 23.62 29.90 -169.99 -5.08 18.53 16 21 H -0.29 -6.09 7.11 56.52 0.40 -5.69 16 22 H -0.29 -6.03 7.11 56.52 0.40 -5.63 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 C 0.12 2.57 8.35 -2.84 -0.02 2.55 16 25 O -0.36 -5.13 9.21 -36.18 -0.33 -5.46 16 26 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.62 4.98 -51.93 -0.26 0.36 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.53 6.63 -51.93 -0.34 0.19 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.14 1.70 8.14 -51.93 -0.42 1.28 16 39 H 0.14 1.59 8.14 -51.92 -0.42 1.16 16 40 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.07 1.34 8.09 -51.93 -0.42 0.92 16 42 H 0.05 1.40 7.70 -51.93 -0.40 1.00 16 43 H 0.27 7.76 7.01 -40.82 -0.29 7.47 16 44 H 0.07 1.53 8.09 -51.93 -0.42 1.11 16 45 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 LS Contribution 366.32 15.07 5.52 5.52 Total: -1.00 -32.58 366.32 -10.38 -42.96 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -7.58 Total: 1.68 kcal Atomic # 6 Polarization: -22.22 SS G_CDS: -0.47 Total: -22.70 kcal Atomic # 7 Polarization: -46.27 SS G_CDS: 0.28 Total: -45.99 kcal Atomic # 8 Polarization: -44.94 SS G_CDS: -2.42 Total: -47.36 kcal Atomic # 14 Polarization: 23.62 SS G_CDS: -5.08 Total: 18.53 kcal Atomic # 16 Polarization: 47.96 SS G_CDS: -0.62 Total: 47.34 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.58 -10.38 -42.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885293976.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.587 kcal (2) G-P(sol) polarization free energy of solvation -32.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds