Wall clock time and date at job start Tue Mar 31 2020 11:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.48015 * 2 1 4 4 C 1.53089 * 109.48047 * 120.02835 * 2 1 3 5 5 C 1.53179 * 109.16436 * 177.59055 * 4 2 1 6 6 C 1.53175 * 109.03545 * 303.01892 * 5 4 2 7 7 C 1.53092 * 109.16238 * 56.97913 * 6 5 4 8 8 H 1.08995 * 109.48367 * 62.38883 * 7 6 5 9 9 C 1.53006 * 109.47899 * 182.41160 * 7 6 5 10 10 S 1.81398 * 109.47130 * 184.97730 * 9 7 6 11 11 O 1.42102 * 110.54414 * 68.37289 * 10 9 7 12 12 O 1.42101 * 110.54277 * 291.62123 * 10 9 7 13 13 N 1.65600 * 104.44906 * 179.97438 * 10 9 7 14 14 C 1.47580 * 134.49049 * 90.00236 * 13 10 9 15 15 C 1.53949 * 86.11873 * 155.35856 * 14 13 10 16 16 C 1.50695 * 113.74240 * 137.95058 * 15 14 13 17 17 H 1.07995 * 120.00496 * 1.92583 * 16 15 14 18 18 C 1.37880 * 119.99572 * 181.92516 * 16 15 14 19 19 N 1.31511 * 120.00327 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 119.99951 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 59.99744 * 20 18 16 22 22 H 1.48503 * 109.47261 * 299.99924 * 20 18 16 23 23 H 1.48500 * 109.47454 * 179.97438 * 20 18 16 24 24 C 1.47812 * 134.45869 * 269.86733 * 13 10 9 25 25 O 1.42903 * 109.47626 * 239.97861 * 2 1 3 26 26 H 1.09007 * 109.47175 * 299.97628 * 1 2 3 27 27 H 1.09002 * 109.47553 * 59.97178 * 1 2 3 28 28 H 1.08997 * 109.47479 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46962 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.47659 * 300.02731 * 3 2 1 31 31 H 1.09008 * 109.46759 * 60.02938 * 3 2 1 32 32 H 1.08999 * 109.52514 * 57.68313 * 4 2 1 33 33 H 1.09010 * 109.57186 * 297.52504 * 4 2 1 34 34 H 1.08996 * 109.54440 * 183.14864 * 5 4 2 35 35 H 1.08997 * 109.61339 * 62.92625 * 5 4 2 36 36 H 1.09003 * 109.52239 * 297.07630 * 6 5 4 37 37 H 1.08999 * 109.52509 * 176.88701 * 6 5 4 38 38 H 1.08993 * 109.47049 * 64.97571 * 9 7 6 39 39 H 1.09007 * 109.46841 * 304.97731 * 9 7 6 40 40 H 1.09000 * 113.77172 * 41.05341 * 14 13 10 41 41 H 1.09007 * 113.87004 * 269.67142 * 14 13 10 42 42 H 1.09000 * 113.73924 * 269.15796 * 15 14 13 43 43 H 0.97006 * 119.99995 * 359.97438 * 19 18 16 44 44 H 1.08997 * 113.76932 * 90.37598 * 24 13 10 45 45 H 1.08998 * 113.83346 * 318.91979 * 24 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0405 -0.7222 1.2495 5 6 3.5711 -0.7709 1.2122 6 6 4.0176 -1.4601 -0.0809 7 6 3.4306 -0.7094 -1.2790 8 1 3.8193 0.3088 -1.2960 9 6 3.8226 -1.4268 -2.5724 10 16 3.2532 -0.4589 -3.9971 11 8 3.9839 0.7556 -4.0989 12 8 1.8342 -0.4686 -4.0715 13 7 3.7378 -1.3381 -5.3141 14 6 3.1257 -2.4083 -6.1252 15 6 4.0545 -1.9367 -7.2588 16 6 4.6871 -3.0639 -8.0335 17 1 4.4461 -4.0882 -7.7905 18 6 5.5738 -2.7874 -9.0525 19 7 5.8678 -1.5402 -9.3481 20 14 6.3575 -4.1846 -10.0134 21 1 5.2965 -4.9903 -10.6696 22 1 7.1333 -5.0482 -9.0873 23 1 7.2652 -3.6262 -11.0475 24 6 4.9563 -1.3637 -6.1504 25 8 2.0064 -0.6741 -1.1665 26 1 -0.3634 0.5135 0.8903 27 1 -0.3634 0.5143 -0.8897 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1302 1.4422 -0.0005 30 1 1.6766 1.9565 -0.8897 31 1 1.6773 1.9561 0.8903 32 1 1.6442 -1.7374 1.2710 33 1 1.7148 -0.1851 2.1405 34 1 3.9391 -1.3326 2.0707 35 1 3.9702 0.2430 1.2415 36 1 3.6612 -2.4902 -0.0863 37 1 5.1058 -1.4499 -0.1421 38 1 3.3599 -2.4134 -2.5952 39 1 4.9066 -1.5327 -2.6149 40 1 2.0668 -2.2524 -6.3313 41 1 3.3457 -3.4140 -5.7668 42 1 3.6115 -1.1757 -7.9011 43 1 5.4606 -0.8146 -8.8494 44 1 5.7164 -2.0610 -5.7981 45 1 5.3562 -0.3752 -6.3765 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885293976.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:20 Heat of formation + Delta-G solvation = -123.887904 kcal Electronic energy + Delta-G solvation = -25907.691535 eV Core-core repulsion = 22245.010489 eV Total energy + Delta-G solvation = -3662.681046 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.18770 -39.89453 -38.20989 -37.06722 -35.57015 -34.76889 -34.71910 -31.44843 -29.79383 -28.49763 -27.62666 -26.97889 -26.06760 -23.95562 -22.88367 -21.88908 -20.38988 -19.72335 -19.07944 -18.33932 -17.77915 -17.49159 -16.99386 -16.76351 -16.28256 -16.05579 -15.58699 -15.40838 -15.02924 -14.82274 -14.38490 -14.23536 -14.14847 -13.92971 -13.72325 -13.35761 -13.27007 -13.19271 -13.15322 -13.04248 -12.96385 -12.89180 -12.72433 -12.65467 -12.39012 -12.22333 -12.00727 -11.94794 -11.87926 -11.64445 -11.36032 -11.13405 -10.53420 -10.49865 -10.43380 -9.87086 -8.57013 -6.30351 -0.85192 1.54245 1.63229 1.69754 1.88386 2.38275 2.64900 2.78685 2.97319 3.23470 3.35791 3.64263 3.73979 3.76732 3.82656 3.90072 3.96642 4.04688 4.19243 4.22031 4.28658 4.43921 4.53536 4.55283 4.59033 4.64270 4.65327 4.72419 4.80350 4.84924 4.85990 4.95322 4.97136 4.98770 5.04256 5.08406 5.16638 5.29172 5.41567 5.45577 5.73628 6.06840 6.15993 6.24681 6.62818 7.51451 8.82576 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.030255 B = 0.003089 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.247314 B = 9063.086930 C = 9286.198698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.096 3.904 3 C -0.190 4.190 4 C -0.137 4.137 5 C -0.126 4.126 6 C -0.138 4.138 7 C 0.088 3.912 8 H 0.070 0.930 9 C -0.606 4.606 10 S 2.616 3.384 11 O -0.997 6.997 12 O -0.979 6.979 13 N -1.041 6.041 14 C 0.139 3.861 15 C -0.004 4.004 16 C -0.600 4.600 17 H 0.065 0.935 18 C -0.028 4.028 19 N -0.936 5.936 20 Si 1.116 2.884 21 H -0.272 1.272 22 H -0.265 1.265 23 H -0.292 1.292 24 C 0.128 3.872 25 O -0.395 6.395 26 H 0.099 0.901 27 H 0.047 0.953 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.046 0.954 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.156 0.844 39 H 0.170 0.830 40 H 0.068 0.932 41 H 0.099 0.901 42 H 0.021 0.979 43 H 0.258 0.742 44 H 0.091 0.909 45 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.512 -1.052 24.664 25.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.058 3.942 3 C -0.247 4.247 4 C -0.175 4.175 5 C -0.164 4.164 6 C -0.176 4.176 7 C 0.029 3.971 8 H 0.088 0.912 9 C -0.738 4.738 10 S 2.717 3.283 11 O -0.988 6.988 12 O -0.969 6.969 13 N -0.879 5.879 14 C 0.014 3.986 15 C -0.025 4.025 16 C -0.638 4.638 17 H 0.083 0.917 18 C -0.227 4.227 19 N -0.572 5.572 20 Si 0.938 3.062 21 H -0.198 1.198 22 H -0.190 1.190 23 H -0.218 1.218 24 C 0.003 3.997 25 O -0.316 6.316 26 H 0.117 0.883 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.115 0.885 32 H 0.090 0.910 33 H 0.115 0.885 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.174 0.826 39 H 0.188 0.812 40 H 0.087 0.913 41 H 0.117 0.883 42 H 0.039 0.961 43 H 0.068 0.932 44 H 0.109 0.891 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.161 -0.487 23.458 23.829 hybrid contribution -0.701 0.436 1.183 1.443 sum -4.862 -0.052 24.641 25.116 Atomic orbital electron populations 1.21829 0.91723 1.03102 1.03084 1.21865 0.95601 0.91521 0.85221 1.22584 1.02250 0.96323 1.03539 1.22172 0.96317 1.01639 0.97372 1.21723 0.95464 1.01774 0.97413 1.22159 1.02048 1.00297 0.93133 1.21826 0.82955 0.98730 0.93632 0.91230 1.30583 1.14383 1.15655 1.13197 1.04590 0.73690 0.74921 0.75141 1.93502 1.74771 1.44080 1.86497 1.93510 1.30135 1.87127 1.86174 1.60258 1.30020 1.53797 1.43861 1.22856 0.97441 0.90172 0.88157 1.20688 0.93830 0.96035 0.91995 1.22218 1.28655 0.93494 1.19462 0.91705 1.27272 0.95976 1.02328 0.97145 1.70913 1.43736 0.99935 1.42638 0.82930 0.75962 0.72014 0.75261 1.19785 1.19008 1.21798 1.23149 0.87901 0.99479 0.89221 1.88066 1.19849 1.78217 1.45424 0.88279 0.93371 0.91833 0.91582 0.93524 0.88518 0.90982 0.88518 0.89114 0.90878 0.90244 0.88866 0.82552 0.81223 0.91321 0.88265 0.96060 0.93236 0.89114 0.93393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 8.85 71.98 0.64 -1.93 16 2 C 0.10 1.92 1.11 -10.76 -0.01 1.90 16 3 C -0.19 -3.52 7.94 71.98 0.57 -2.95 16 4 C -0.14 -1.89 4.92 30.68 0.15 -1.74 16 5 C -0.13 -1.60 5.72 30.71 0.18 -1.42 16 6 C -0.14 -2.20 5.42 30.68 0.17 -2.03 16 7 C 0.09 2.04 2.31 30.63 0.07 2.11 16 8 H 0.07 1.64 6.34 -2.39 -0.02 1.62 16 9 C -0.61 -14.85 5.87 71.98 0.42 -14.43 16 10 S 2.62 95.80 5.79 -56.49 -0.33 95.47 16 11 O -1.00 -42.52 18.02 -127.65 -2.30 -44.82 16 12 O -0.98 -41.62 17.55 -125.40 -2.20 -43.82 16 13 N -1.04 -41.07 4.00 -529.12 -2.12 -43.19 16 14 C 0.14 5.53 8.47 86.49 0.73 6.26 16 15 C 0.00 -0.20 3.07 -10.88 -0.03 -0.23 16 16 C -0.60 -31.05 8.77 25.60 0.22 -30.83 16 17 H 0.06 3.18 7.81 -2.91 -0.02 3.16 16 18 C -0.03 -1.52 5.46 84.66 0.46 -1.06 16 19 N -0.94 -55.20 13.65 21.45 0.29 -54.91 16 20 Si 1.12 47.08 29.90 68.60 2.05 49.13 16 21 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 22 H -0.27 -10.16 7.11 99.48 0.71 -9.45 16 23 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 24 C 0.13 5.62 8.35 86.44 0.72 6.34 16 25 O -0.39 -10.62 9.21 -148.08 -1.36 -11.99 16 26 H 0.10 1.19 8.14 -2.38 -0.02 1.17 16 27 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.07 1.17 4.98 -2.39 -0.01 1.16 16 30 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 32 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.09 0.82 8.14 -2.39 -0.02 0.81 16 35 H 0.07 0.87 6.63 -2.39 -0.02 0.85 16 36 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.16 3.36 8.14 -2.39 -0.02 3.34 16 39 H 0.17 3.21 8.14 -2.39 -0.02 3.19 16 40 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 41 H 0.10 3.43 8.09 -2.38 -0.02 3.41 16 42 H 0.02 1.16 7.70 -2.39 -0.02 1.14 16 43 H 0.26 15.48 7.01 -92.70 -0.65 14.83 16 44 H 0.09 3.65 8.09 -2.39 -0.02 3.63 16 45 H 0.05 2.21 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -73.14 366.32 -0.60 -73.74 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: 1.08 Total: 20.38 kcal Atomic # 6 Polarization: -44.29 SS G_CDS: 4.29 Total: -40.00 kcal Atomic # 7 Polarization: -96.27 SS G_CDS: -1.82 Total: -98.10 kcal Atomic # 8 Polarization: -94.76 SS G_CDS: -5.86 Total: -100.63 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.05 Total: 49.13 kcal Atomic # 16 Polarization: 95.80 SS G_CDS: -0.33 Total: 95.47 kcal Total: -73.14 -0.60 -73.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885293976.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.148 kcal (2) G-P(sol) polarization free energy of solvation -73.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds