Wall clock time and date at job start Tue Mar 31 2020 12:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38039 * 126.29014 * 2 1 4 4 C 1.47431 * 126.41765 * 0.03996 * 3 2 1 5 5 O 1.21606 * 119.99589 * 353.44319 * 4 3 2 6 6 N 1.34772 * 120.00166 * 173.16437 * 4 3 2 7 7 C 1.46502 * 120.00274 * 355.19834 * 6 4 3 8 8 C 1.46501 * 120.00046 * 175.19952 * 6 4 3 9 9 H 1.08995 * 109.47310 * 359.97438 * 8 6 4 10 10 C 1.52998 * 109.47073 * 240.00173 * 8 6 4 11 11 C 1.50695 * 109.47526 * 120.00291 * 8 6 4 12 12 C 1.34513 * 125.78964 * 220.00576 * 11 8 6 13 13 C 1.41392 * 106.83946 * 179.97438 * 12 11 8 14 14 C 1.34513 * 106.84077 * 359.97438 * 13 12 11 15 15 O 1.34305 * 108.42065 * 359.74002 * 14 13 12 16 16 C 1.41288 * 107.16938 * 180.29789 * 3 2 1 17 17 N 1.30446 * 108.02635 * 359.56006 * 16 3 2 18 18 N 1.34260 * 126.29224 * 180.02562 * 2 1 3 19 19 C 1.46497 * 125.75353 * 359.93582 * 18 2 1 20 20 C 1.50693 * 109.47076 * 90.00415 * 19 18 2 21 21 H 1.08003 * 120.00196 * 0.02562 * 20 19 18 22 22 C 1.37878 * 120.00024 * 179.97438 * 20 19 18 23 23 N 1.31513 * 120.00236 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99847 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47151 * 90.00164 * 24 22 20 26 26 H 1.48507 * 109.46935 * 209.99984 * 24 22 20 27 27 H 1.48495 * 109.47164 * 329.99709 * 24 22 20 28 28 H 1.09005 * 109.47038 * 89.99467 * 1 2 3 29 29 H 1.08995 * 109.46850 * 209.99322 * 1 2 3 30 30 H 1.08997 * 109.46813 * 329.99517 * 1 2 3 31 31 H 1.09002 * 109.46716 * 85.60020 * 7 6 4 32 32 H 1.08994 * 109.47244 * 205.60366 * 7 6 4 33 33 H 1.09006 * 109.46909 * 325.60839 * 7 6 4 34 34 H 1.09003 * 109.47451 * 179.97438 * 10 8 6 35 35 H 1.09004 * 109.47415 * 300.00001 * 10 8 6 36 36 H 1.09006 * 109.47334 * 59.99687 * 10 8 6 37 37 H 1.07996 * 126.57930 * 359.95288 * 12 11 8 38 38 H 1.07999 * 126.57449 * 180.02562 * 13 12 11 39 39 H 1.07994 * 125.78666 * 180.02562 * 14 13 12 40 40 H 1.08004 * 125.98754 * 179.73917 * 16 3 2 41 41 H 1.08996 * 109.47137 * 210.00789 * 19 18 2 42 42 H 1.09008 * 109.47279 * 330.00529 * 19 18 2 43 43 H 0.97000 * 120.00222 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5203 0.0008 5 8 0.7061 2.7898 -0.1187 6 7 2.7921 3.5082 0.1396 7 6 4.1974 3.1825 0.3949 8 6 2.3718 4.9077 0.0353 9 1 1.2996 4.9519 -0.1555 10 6 3.1222 5.5811 -1.1155 11 6 2.6830 5.6232 1.3245 12 6 1.8969 6.5316 1.9297 13 6 2.5720 6.9410 3.1026 14 6 3.7299 6.2578 3.1444 15 8 3.7891 5.4567 2.0681 16 6 3.6590 0.6498 -0.0070 17 7 3.6341 -0.6544 -0.0014 18 7 2.3017 -1.0821 -0.0005 19 6 1.8502 -2.4758 0.0002 20 6 1.6941 -2.9539 -1.4203 21 1 1.9102 -2.2866 -2.2416 22 6 1.2766 -4.2437 -1.6716 23 7 1.0139 -5.0565 -0.6716 24 14 1.0839 -4.8367 -3.4325 25 1 2.3648 -5.4249 -3.8998 26 1 0.0149 -5.8658 -3.4941 27 1 0.7185 -3.6908 -4.3035 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5137 30 1 -0.3633 0.8899 0.5139 31 1 4.7066 3.0031 -0.5521 32 1 4.6750 4.0144 0.9124 33 1 4.2563 2.2873 1.0142 34 1 2.8093 6.6223 -1.1935 35 1 4.1946 5.5369 -0.9252 36 1 2.8972 5.0636 -2.0482 37 1 0.9349 6.8814 1.5854 38 1 2.2241 7.6630 3.8266 39 1 4.4821 6.3364 3.9153 40 1 4.5448 1.2677 -0.0128 41 1 2.5852 -3.0956 0.5136 42 1 0.8919 -2.5470 0.5149 43 1 0.7198 -5.9638 -0.8484 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887972850.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:07 Heat of formation + Delta-G solvation = 69.032362 kcal Electronic energy + Delta-G solvation = -26451.930145 eV Core-core repulsion = 22694.463549 eV Total energy + Delta-G solvation = -3757.466596 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.74994 -40.90490 -39.11927 -36.06216 -34.02253 -33.32353 -32.50286 -31.81025 -30.87448 -28.71810 -27.47308 -27.17196 -26.46409 -23.98316 -23.25218 -21.93724 -21.53051 -20.48628 -19.74533 -18.46019 -17.53306 -16.88764 -16.65677 -16.25808 -15.93887 -15.41640 -15.20836 -14.65045 -14.50268 -14.12364 -13.70689 -13.56349 -13.30563 -13.06946 -12.90302 -12.79755 -12.61553 -12.48373 -12.42895 -12.09084 -12.04244 -11.94205 -11.57483 -11.47341 -11.28477 -11.05132 -10.86904 -10.35307 -10.18686 -10.06660 -9.92540 -9.39911 -8.75327 -8.70813 -8.62928 -8.52713 -7.91291 -6.33361 -4.41109 1.55949 2.15844 2.44574 2.73960 2.84804 3.07841 3.18604 3.24914 3.28399 3.42476 3.85329 4.24594 4.38132 4.79506 4.84365 4.96140 4.99816 5.03679 5.12660 5.21365 5.25840 5.40090 5.46715 5.49277 5.58239 5.66968 5.72068 5.74784 5.80107 5.88288 5.91339 6.05478 6.13006 6.30546 6.41110 6.52637 6.56959 6.81068 6.91088 7.00664 7.16830 7.53252 7.56643 7.77516 7.79472 8.37776 8.52288 8.64631 9.25782 10.74899 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027764 B = 0.002816 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.268199 B = 9942.116925 C =10018.736619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.166 3.834 3 C -0.330 4.330 4 C 0.607 3.393 5 O -0.554 6.554 6 N -0.613 5.613 7 C 0.063 3.937 8 C 0.222 3.778 9 H 0.128 0.872 10 C -0.160 4.160 11 C -0.013 4.013 12 C -0.205 4.205 13 C -0.213 4.213 14 C -0.047 4.047 15 O -0.168 6.168 16 C 0.039 3.961 17 N -0.297 5.297 18 N -0.314 5.314 19 C 0.251 3.749 20 C -0.539 4.539 21 H 0.065 0.935 22 C 0.067 3.933 23 N -0.890 5.890 24 Si 0.908 3.092 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.271 1.271 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.148 0.852 38 H 0.146 0.854 39 H 0.200 0.800 40 H 0.194 0.806 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.662 21.928 4.941 22.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.028 3.972 3 C -0.346 4.346 4 C 0.400 3.600 5 O -0.433 6.433 6 N -0.346 5.346 7 C -0.080 4.080 8 C 0.118 3.882 9 H 0.146 0.854 10 C -0.218 4.218 11 C -0.064 4.064 12 C -0.225 4.225 13 C -0.232 4.232 14 C -0.115 4.115 15 O -0.064 6.064 16 C -0.147 4.147 17 N -0.117 5.117 18 N -0.090 5.090 19 C 0.134 3.866 20 C -0.578 4.578 21 H 0.083 0.917 22 C -0.137 4.137 23 N -0.527 5.527 24 Si 0.735 3.265 25 H -0.202 1.202 26 H -0.208 1.208 27 H -0.196 1.196 28 H 0.103 0.897 29 H 0.091 0.909 30 H 0.109 0.891 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.166 0.834 38 H 0.164 0.836 39 H 0.217 0.783 40 H 0.210 0.790 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.902 20.383 4.855 21.519 hybrid contribution -0.478 0.469 -0.658 0.939 sum 4.424 20.851 4.197 21.725 Atomic orbital electron populations 1.20542 0.86807 1.03572 1.03965 1.21459 0.94932 0.86526 0.94234 1.19574 0.93244 0.92194 1.29546 1.17400 0.84467 0.83968 0.74203 1.90682 1.16757 1.84056 1.51807 1.47567 1.09105 1.04547 1.73415 1.22476 0.81409 1.02987 1.01110 1.19562 1.01870 0.79502 0.87239 0.85439 1.22184 1.00983 1.00888 0.97708 1.22911 0.86743 1.00683 0.96078 1.21588 1.01970 1.01892 0.97018 1.21808 0.96235 1.04874 1.00321 1.24070 1.00830 0.94990 0.91579 1.84065 1.38959 1.53036 1.30377 1.24708 0.97200 0.92594 1.00224 1.77173 0.98555 1.12466 1.23482 1.49390 1.02595 1.08273 1.48769 1.19850 0.96398 0.70945 0.99441 1.21247 1.47397 0.98131 0.91005 0.91658 1.24923 0.94441 0.95992 0.98297 1.69912 1.44550 1.07165 1.31117 0.86322 0.78086 0.78642 0.83477 1.20248 1.20783 1.19579 0.89713 0.90877 0.89116 0.92241 0.90465 0.89261 0.91064 0.91819 0.90939 0.83433 0.83591 0.78297 0.78962 0.92523 0.92597 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.67 9.51 36.01 0.34 -1.32 16 2 C 0.17 3.43 7.00 -81.60 -0.57 2.86 16 3 C -0.33 -6.20 5.95 -105.07 -0.62 -6.82 16 4 C 0.61 10.44 7.66 -12.52 -0.10 10.34 16 5 O -0.55 -10.62 14.27 5.27 0.08 -10.54 16 6 N -0.61 -8.26 2.75 -176.53 -0.49 -8.74 16 7 C 0.06 0.68 7.57 59.85 0.45 1.14 16 8 C 0.22 2.57 3.10 -69.09 -0.21 2.36 16 9 H 0.13 1.60 6.90 -51.93 -0.36 1.24 16 10 C -0.16 -1.44 9.18 37.16 0.34 -1.09 16 11 C -0.01 -0.15 6.05 -35.63 -0.22 -0.36 16 12 C -0.20 -2.17 10.80 -39.70 -0.43 -2.60 16 13 C -0.21 -1.99 10.91 -39.70 -0.43 -2.42 16 14 C -0.05 -0.42 12.09 29.42 0.36 -0.06 16 15 O -0.17 -1.85 8.07 5.69 0.05 -1.81 16 16 C 0.04 0.69 9.88 -16.98 -0.17 0.52 16 17 N -0.30 -6.44 12.50 30.86 0.39 -6.05 16 18 N -0.31 -7.16 3.56 -57.78 -0.21 -7.37 16 19 C 0.25 6.28 5.97 -5.20 -0.03 6.25 16 20 C -0.54 -14.60 9.39 -34.44 -0.32 -14.93 16 21 H 0.07 1.82 7.81 -52.48 -0.41 1.41 16 22 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 23 N -0.89 -24.68 13.29 55.43 0.74 -23.94 16 24 Si 0.91 20.87 29.54 -169.99 -5.02 15.85 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 28 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 29 H 0.07 1.30 7.05 -51.93 -0.37 0.94 16 30 H 0.09 1.59 6.66 -51.93 -0.35 1.24 16 31 H 0.06 0.56 7.51 -51.93 -0.39 0.17 16 32 H 0.08 0.75 5.52 -51.93 -0.29 0.47 16 33 H 0.09 1.03 5.04 -51.93 -0.26 0.77 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.54 7.67 -51.93 -0.40 0.14 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.15 1.35 8.06 -52.49 -0.42 0.92 16 38 H 0.15 1.04 8.06 -52.49 -0.42 0.61 16 39 H 0.20 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.19 2.57 4.49 -52.48 -0.24 2.33 16 41 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 42 H 0.06 1.39 7.02 -51.92 -0.36 1.03 16 43 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 356.51 15.07 5.37 5.37 Total: -1.00 -31.88 356.51 -6.32 -38.19 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -5.51 Total: 3.46 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -1.71 Total: -4.43 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: 0.43 Total: -46.11 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.12 Total: -12.35 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.88 -6.32 -38.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887972850.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.227 kcal (2) G-P(sol) polarization free energy of solvation -31.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds