Wall clock time and date at job start Tue Mar 31 2020 12:10:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38039 * 126.29014 * 2 1 4 4 C 1.47431 * 126.41765 * 0.03996 * 3 2 1 5 5 O 1.21606 * 119.99589 * 353.44319 * 4 3 2 6 6 N 1.34772 * 120.00166 * 173.16437 * 4 3 2 7 7 C 1.46502 * 120.00274 * 355.19834 * 6 4 3 8 8 C 1.46501 * 120.00046 * 175.19952 * 6 4 3 9 9 H 1.08995 * 109.47310 * 359.97438 * 8 6 4 10 10 C 1.52998 * 109.47073 * 240.00173 * 8 6 4 11 11 C 1.50695 * 109.47526 * 120.00291 * 8 6 4 12 12 C 1.34513 * 125.78964 * 220.00576 * 11 8 6 13 13 C 1.41392 * 106.83946 * 179.97438 * 12 11 8 14 14 C 1.34513 * 106.84077 * 359.97438 * 13 12 11 15 15 O 1.34305 * 108.42065 * 359.74002 * 14 13 12 16 16 C 1.41288 * 107.16938 * 180.29789 * 3 2 1 17 17 N 1.30446 * 108.02635 * 359.56006 * 16 3 2 18 18 N 1.34260 * 126.29224 * 180.02562 * 2 1 3 19 19 C 1.46497 * 125.75353 * 359.93582 * 18 2 1 20 20 C 1.50693 * 109.47076 * 90.00415 * 19 18 2 21 21 H 1.08003 * 120.00196 * 0.02562 * 20 19 18 22 22 C 1.37878 * 120.00024 * 179.97438 * 20 19 18 23 23 N 1.31513 * 120.00236 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99847 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47151 * 90.00164 * 24 22 20 26 26 H 1.48507 * 109.46935 * 209.99984 * 24 22 20 27 27 H 1.48495 * 109.47164 * 329.99709 * 24 22 20 28 28 H 1.09005 * 109.47038 * 89.99467 * 1 2 3 29 29 H 1.08995 * 109.46850 * 209.99322 * 1 2 3 30 30 H 1.08997 * 109.46813 * 329.99517 * 1 2 3 31 31 H 1.09002 * 109.46716 * 85.60020 * 7 6 4 32 32 H 1.08994 * 109.47244 * 205.60366 * 7 6 4 33 33 H 1.09006 * 109.46909 * 325.60839 * 7 6 4 34 34 H 1.09003 * 109.47451 * 179.97438 * 10 8 6 35 35 H 1.09004 * 109.47415 * 300.00001 * 10 8 6 36 36 H 1.09006 * 109.47334 * 59.99687 * 10 8 6 37 37 H 1.07996 * 126.57930 * 359.95288 * 12 11 8 38 38 H 1.07999 * 126.57449 * 180.02562 * 13 12 11 39 39 H 1.07994 * 125.78666 * 180.02562 * 14 13 12 40 40 H 1.08004 * 125.98754 * 179.73917 * 16 3 2 41 41 H 1.08996 * 109.47137 * 210.00789 * 19 18 2 42 42 H 1.09008 * 109.47279 * 330.00529 * 19 18 2 43 43 H 0.97000 * 120.00222 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5203 0.0008 5 8 0.7061 2.7898 -0.1187 6 7 2.7921 3.5082 0.1396 7 6 4.1974 3.1825 0.3949 8 6 2.3718 4.9077 0.0353 9 1 1.2996 4.9519 -0.1555 10 6 3.1222 5.5811 -1.1155 11 6 2.6830 5.6232 1.3245 12 6 1.8969 6.5316 1.9297 13 6 2.5720 6.9410 3.1026 14 6 3.7299 6.2578 3.1444 15 8 3.7891 5.4567 2.0681 16 6 3.6590 0.6498 -0.0070 17 7 3.6341 -0.6544 -0.0014 18 7 2.3017 -1.0821 -0.0005 19 6 1.8502 -2.4758 0.0002 20 6 1.6941 -2.9539 -1.4203 21 1 1.9102 -2.2866 -2.2416 22 6 1.2766 -4.2437 -1.6716 23 7 1.0139 -5.0565 -0.6716 24 14 1.0839 -4.8367 -3.4325 25 1 2.3648 -5.4249 -3.8998 26 1 0.0149 -5.8658 -3.4941 27 1 0.7185 -3.6908 -4.3035 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5137 30 1 -0.3633 0.8899 0.5139 31 1 4.7066 3.0031 -0.5521 32 1 4.6750 4.0144 0.9124 33 1 4.2563 2.2873 1.0142 34 1 2.8093 6.6223 -1.1935 35 1 4.1946 5.5369 -0.9252 36 1 2.8972 5.0636 -2.0482 37 1 0.9349 6.8814 1.5854 38 1 2.2241 7.6630 3.8266 39 1 4.4821 6.3364 3.9153 40 1 4.5448 1.2677 -0.0128 41 1 2.5852 -3.0956 0.5136 42 1 0.8919 -2.5470 0.5149 43 1 0.7198 -5.9638 -0.8484 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887972850.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:07 Heat of formation + Delta-G solvation = 50.079495 kcal Electronic energy + Delta-G solvation = -26452.752003 eV Core-core repulsion = 22694.463549 eV Total energy + Delta-G solvation = -3758.288454 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.50852 -42.42571 -40.40011 -37.22279 -35.86025 -34.33305 -33.85532 -33.12872 -32.38094 -29.52126 -29.08832 -28.44088 -27.85540 -25.54844 -24.56498 -22.79200 -22.70250 -21.71598 -20.84468 -19.91037 -18.86779 -18.35422 -18.13833 -17.15462 -17.00413 -16.76451 -16.58077 -16.31891 -15.88028 -15.36003 -15.03026 -14.67100 -14.36113 -14.27235 -14.10151 -13.98699 -13.80706 -13.70514 -13.62139 -13.49249 -13.27933 -13.15582 -12.96319 -12.85194 -12.71715 -12.39233 -12.33445 -12.24442 -11.84743 -11.73738 -10.82129 -10.78423 -10.76674 -10.28072 -9.83133 -9.44947 -9.37891 -8.38479 -6.54867 0.63217 0.79977 1.29276 1.37238 1.38319 1.48718 1.62645 1.72998 2.00311 2.14444 2.32261 2.47937 2.93760 3.56736 3.71357 3.73631 3.98278 4.08156 4.15743 4.20398 4.23905 4.31144 4.35865 4.41462 4.59641 4.64943 4.71207 4.77125 4.82145 4.87124 4.88416 4.99532 5.02184 5.05458 5.14553 5.18728 5.30697 5.47447 5.49563 5.62595 5.67874 5.74159 6.03203 6.23355 6.34704 6.54039 6.81597 7.16193 7.20928 8.69559 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027764 B = 0.002816 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.268199 B = 9942.116925 C =10018.736619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.146 3.854 3 C -0.330 4.330 4 C 0.604 3.396 5 O -0.580 6.580 6 N -0.604 5.604 7 C 0.056 3.944 8 C 0.221 3.779 9 H 0.112 0.888 10 C -0.152 4.152 11 C -0.033 4.033 12 C -0.214 4.214 13 C -0.227 4.227 14 C -0.043 4.043 15 O -0.179 6.179 16 C 0.061 3.939 17 N -0.335 5.335 18 N -0.337 5.337 19 C 0.267 3.733 20 C -0.556 4.556 21 H 0.051 0.949 22 C 0.024 3.976 23 N -0.917 5.917 24 Si 0.972 3.028 25 H -0.272 1.272 26 H -0.271 1.271 27 H -0.270 1.270 28 H 0.084 0.916 29 H 0.071 0.929 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.154 0.846 38 H 0.166 0.834 39 H 0.236 0.764 40 H 0.238 0.762 41 H 0.032 0.968 42 H 0.050 0.950 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.843 23.883 4.673 25.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.010 3.990 3 C -0.345 4.345 4 C 0.396 3.604 5 O -0.461 6.461 6 N -0.336 5.336 7 C -0.086 4.086 8 C 0.117 3.883 9 H 0.130 0.870 10 C -0.209 4.209 11 C -0.084 4.084 12 C -0.234 4.234 13 C -0.246 4.246 14 C -0.110 4.110 15 O -0.075 6.075 16 C -0.125 4.125 17 N -0.155 5.155 18 N -0.114 5.114 19 C 0.148 3.852 20 C -0.594 4.594 21 H 0.070 0.930 22 C -0.177 4.177 23 N -0.555 5.555 24 Si 0.795 3.205 25 H -0.198 1.198 26 H -0.196 1.196 27 H -0.194 1.194 28 H 0.102 0.898 29 H 0.090 0.910 30 H 0.117 0.883 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.172 0.828 38 H 0.184 0.816 39 H 0.252 0.748 40 H 0.254 0.746 41 H 0.050 0.950 42 H 0.068 0.932 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.107 22.377 4.598 23.647 hybrid contribution -0.791 0.046 -0.467 0.920 sum 5.316 22.423 4.131 23.412 Atomic orbital electron populations 1.20519 0.85826 1.03851 1.03971 1.21944 0.95932 0.86695 0.94422 1.19869 0.93439 0.92800 1.28408 1.17246 0.84644 0.83960 0.74549 1.90665 1.17915 1.84342 1.53219 1.47595 1.09535 1.04745 1.71740 1.22640 0.80094 1.03463 1.02366 1.19655 1.01488 0.78435 0.88675 0.86996 1.22134 1.01174 1.01409 0.96222 1.22796 0.87522 1.01614 0.96476 1.21884 1.02272 1.01755 0.97503 1.22134 0.96468 1.05649 1.00385 1.24828 1.01386 0.93606 0.91156 1.84032 1.38819 1.53675 1.30990 1.25465 0.98307 0.91552 0.97179 1.77130 0.98261 1.14475 1.25614 1.49140 1.03470 1.07734 1.51043 1.19376 0.95291 0.72309 0.98193 1.21387 1.47961 0.98491 0.91521 0.93023 1.25731 0.93788 0.95915 1.02301 1.69993 1.44844 1.07600 1.33048 0.85346 0.78365 0.78213 0.78544 1.19752 1.19579 1.19424 0.89780 0.90969 0.88313 0.90060 0.88767 0.89850 0.89491 0.90846 0.91328 0.82791 0.81640 0.74833 0.74618 0.94992 0.93198 0.91632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.15 9.51 71.24 0.68 -2.47 16 2 C 0.15 6.16 7.00 42.14 0.30 6.45 16 3 C -0.33 -12.24 5.95 -20.15 -0.12 -12.36 16 4 C 0.60 20.36 7.66 86.67 0.66 21.03 16 5 O -0.58 -22.23 14.27 -4.05 -0.06 -22.29 16 6 N -0.60 -15.28 2.75 -830.69 -2.29 -17.57 16 7 C 0.06 1.06 7.57 127.77 0.97 2.03 16 8 C 0.22 4.80 3.10 44.24 0.14 4.94 16 9 H 0.11 2.78 6.90 -2.39 -0.02 2.76 16 10 C -0.15 -2.40 9.18 71.98 0.66 -1.74 16 11 C -0.03 -0.70 6.05 24.83 0.15 -0.55 16 12 C -0.21 -4.23 10.80 22.19 0.24 -3.99 16 13 C -0.23 -3.71 10.91 22.19 0.24 -3.47 16 14 C -0.04 -0.64 12.09 66.97 0.81 0.17 16 15 O -0.18 -3.48 8.07 -2.55 -0.02 -3.50 16 16 C 0.06 2.09 9.88 85.65 0.85 2.93 16 17 N -0.34 -14.62 12.50 -56.27 -0.70 -15.32 16 18 N -0.34 -15.81 3.56 -336.71 -1.20 -17.01 16 19 C 0.27 13.92 5.97 85.63 0.51 14.43 16 20 C -0.56 -30.84 9.39 25.60 0.24 -30.60 16 21 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 22 C 0.02 1.31 5.46 84.66 0.46 1.77 16 23 N -0.92 -51.52 13.29 21.45 0.28 -51.23 16 24 Si 0.97 42.83 29.54 68.60 2.03 44.85 16 25 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 26 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 27 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 28 H 0.08 3.14 8.14 -2.38 -0.02 3.12 16 29 H 0.07 2.67 7.05 -2.39 -0.02 2.66 16 30 H 0.10 3.51 6.66 -2.39 -0.02 3.50 16 31 H 0.08 1.24 7.51 -2.39 -0.02 1.22 16 32 H 0.09 1.54 5.52 -2.39 -0.01 1.52 16 33 H 0.08 1.70 5.04 -2.38 -0.01 1.69 16 34 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.07 1.02 7.67 -2.39 -0.02 1.01 16 36 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.15 2.67 8.06 -2.91 -0.02 2.64 16 38 H 0.17 1.91 8.06 -2.91 -0.02 1.89 16 39 H 0.24 1.52 8.06 -2.91 -0.02 1.49 16 40 H 0.24 5.64 4.49 -2.91 -0.01 5.62 16 41 H 0.03 1.79 8.14 -2.39 -0.02 1.77 16 42 H 0.05 2.61 7.02 -2.38 -0.02 2.59 16 43 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 Total: -1.00 -69.85 356.51 5.86 -63.98 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: 1.04 Total: 19.51 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: 6.78 Total: -1.43 kcal Atomic # 7 Polarization: -97.23 SS G_CDS: -3.90 Total: -101.13 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -0.08 Total: -25.79 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Total: -69.85 5.86 -63.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887972850.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.063 kcal (2) G-P(sol) polarization free energy of solvation -69.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds