Wall clock time and date at job start Tue Mar 31 2020 12:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38053 * 126.29195 * 2 1 4 4 C 1.47423 * 126.41189 * 359.97438 * 3 2 1 5 5 O 1.21602 * 120.00723 * 0.31924 * 4 3 2 6 6 N 1.34787 * 119.99567 * 180.31502 * 4 3 2 7 7 C 1.46498 * 119.99847 * 180.02562 * 6 4 3 8 8 H 1.09004 * 109.47492 * 34.99713 * 7 6 4 9 9 C 1.53007 * 109.46935 * 275.00047 * 7 6 4 10 10 C 1.52994 * 109.47244 * 155.00369 * 7 6 4 11 11 C 1.50704 * 109.46875 * 294.99644 * 10 7 6 12 12 C 1.34518 * 125.78914 * 89.71680 * 11 10 7 13 13 C 1.41383 * 106.83858 * 179.89300 * 12 11 10 14 14 C 1.34506 * 106.84145 * 0.36865 * 13 12 11 15 15 O 1.34298 * 108.42451 * 359.77351 * 14 13 12 16 16 C 1.41282 * 107.16787 * 180.26278 * 3 2 1 17 17 N 1.30446 * 108.02455 * 359.74449 * 16 3 2 18 18 N 1.34260 * 126.28993 * 179.82352 * 2 1 3 19 19 C 1.46491 * 125.75289 * 359.97438 * 18 2 1 20 20 C 1.50702 * 109.46957 * 269.71589 * 19 18 2 21 21 H 1.08002 * 120.00299 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99942 * 179.72213 * 20 19 18 23 23 N 1.31514 * 119.99985 * 180.27663 * 22 20 19 24 24 Si 1.86800 * 119.99777 * 0.28166 * 22 20 19 25 25 H 1.48498 * 109.47109 * 89.99834 * 24 22 20 26 26 H 1.48507 * 109.46754 * 209.99574 * 24 22 20 27 27 H 1.48498 * 109.47278 * 329.99405 * 24 22 20 28 28 H 1.09001 * 109.46825 * 270.18513 * 1 2 3 29 29 H 1.09009 * 109.47195 * 30.17303 * 1 2 3 30 30 H 1.09001 * 109.47700 * 150.17851 * 1 2 3 31 31 H 0.96999 * 119.99717 * 0.02562 * 6 4 3 32 32 H 1.08996 * 109.47052 * 300.00090 * 9 7 6 33 33 H 1.08995 * 109.47198 * 60.00219 * 9 7 6 34 34 H 1.09002 * 109.46948 * 179.97438 * 9 7 6 35 35 H 1.08997 * 109.47427 * 54.99523 * 10 7 6 36 36 H 1.09001 * 109.47390 * 175.00034 * 10 7 6 37 37 H 1.08004 * 126.57817 * 0.02562 * 12 11 10 38 38 H 1.08001 * 126.57512 * 180.12429 * 13 12 11 39 39 H 1.08007 * 125.78700 * 179.79890 * 14 13 12 40 40 H 1.08001 * 125.99061 * 179.77382 * 16 3 2 41 41 H 1.09004 * 109.47166 * 149.71854 * 19 18 2 42 42 H 1.08994 * 109.47507 * 29.71561 * 19 18 2 43 43 H 0.96996 * 119.99730 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1127 0.0000 4 6 1.8858 2.5203 -0.0005 5 8 0.6996 2.7879 0.0048 6 7 2.8000 3.5107 -0.0069 7 6 2.3646 4.9095 -0.0068 8 1 1.4558 5.0072 0.5872 9 6 2.0854 5.3567 -1.4432 10 6 3.4643 5.7860 0.5955 11 6 3.6538 5.4275 2.0470 12 6 4.4959 4.4926 2.5229 13 6 4.3532 4.4909 3.9295 14 6 3.4266 5.4189 4.2284 15 8 3.0065 5.9830 3.0843 16 6 3.6590 0.6499 -0.0062 17 7 3.6340 -0.6543 -0.0041 18 7 2.3017 -1.0822 0.0033 19 6 1.8500 -2.4757 0.0082 20 6 1.7024 -2.9510 1.4306 21 1 1.9225 -2.2817 2.2492 22 6 1.2802 -4.2383 1.6871 23 7 1.1461 -4.6513 2.9285 24 14 0.8989 -5.3956 0.2713 25 1 2.1281 -6.1388 -0.1054 26 1 -0.1531 -6.3575 0.6879 27 1 0.4183 -4.6107 -0.8941 28 1 -0.3633 0.0033 1.0277 29 1 -0.3634 0.8885 -0.5166 30 1 -0.3634 -0.8916 -0.5110 31 1 3.7462 3.2973 -0.0115 32 1 2.9941 5.2591 -2.0372 33 1 1.3019 4.7323 -1.8724 34 1 1.7610 6.3973 -1.4431 35 1 4.3969 5.6212 0.0559 36 1 3.1783 6.8347 0.5148 37 1 5.1561 3.8655 1.9421 38 1 4.8833 3.8619 4.6294 39 1 3.0795 5.6684 5.2203 40 1 4.5449 1.2676 -0.0112 41 1 2.5821 -3.0967 -0.5082 42 1 0.8888 -2.5480 -0.5006 43 1 0.8495 -5.5570 3.1089 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888131597.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:15 Heat of formation + Delta-G solvation = 41.348562 kcal Electronic energy + Delta-G solvation = -26192.239526 eV Core-core repulsion = 22433.572471 eV Total energy + Delta-G solvation = -3758.667055 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.62714 -40.85115 -39.06839 -36.14613 -33.92614 -33.03361 -32.40344 -31.85197 -31.21015 -30.04570 -27.77199 -26.71439 -26.38985 -23.36736 -22.49770 -21.86088 -21.27593 -20.49161 -19.83640 -18.96691 -17.53816 -17.22491 -17.07781 -16.28256 -15.87132 -15.25369 -15.02910 -14.73178 -14.40356 -14.22845 -13.78844 -13.64106 -13.38510 -13.08412 -12.89323 -12.82326 -12.72096 -12.52180 -12.38718 -12.27937 -12.17345 -12.02959 -11.70925 -11.60891 -11.23344 -11.19585 -10.83811 -10.38598 -10.24010 -9.95647 -9.79257 -9.40220 -8.98925 -8.84862 -8.63980 -8.51122 -7.94569 -6.32775 -4.37369 1.65507 2.15490 2.57830 2.74599 2.88932 3.06346 3.12347 3.16879 3.22269 3.51631 3.91162 4.15561 4.44431 4.60415 4.83216 4.92164 4.96645 5.08293 5.09417 5.14742 5.19295 5.29765 5.39302 5.50823 5.56956 5.66833 5.77105 5.81280 5.84651 5.94673 6.03506 6.06379 6.10867 6.28675 6.42367 6.43582 6.49394 6.61132 6.65568 7.03247 7.05881 7.18488 7.57321 7.75518 8.20317 8.29073 8.62806 8.70761 9.21102 10.79531 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017285 B = 0.003205 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.479592 B = 8733.830358 C = 9548.958698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.168 3.832 3 C -0.328 4.328 4 C 0.607 3.393 5 O -0.555 6.555 6 N -0.727 5.727 7 C 0.148 3.852 8 H 0.091 0.909 9 C -0.162 4.162 10 C -0.047 4.047 11 C -0.013 4.013 12 C -0.201 4.201 13 C -0.210 4.210 14 C -0.045 4.045 15 O -0.177 6.177 16 C 0.061 3.939 17 N -0.293 5.293 18 N -0.314 5.314 19 C 0.225 3.775 20 C -0.545 4.545 21 H 0.081 0.919 22 C 0.081 3.919 23 N -0.883 5.883 24 Si 0.874 3.126 25 H -0.270 1.270 26 H -0.279 1.279 27 H -0.264 1.264 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.070 0.930 31 H 0.396 0.604 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.146 0.854 38 H 0.147 0.853 39 H 0.201 0.799 40 H 0.176 0.824 41 H 0.050 0.950 42 H 0.052 0.948 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.955 20.854 -5.469 22.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.031 3.969 3 C -0.343 4.343 4 C 0.397 3.603 5 O -0.434 6.434 6 N -0.380 5.380 7 C 0.043 3.957 8 H 0.109 0.891 9 C -0.221 4.221 10 C -0.084 4.084 11 C -0.063 4.063 12 C -0.220 4.220 13 C -0.229 4.229 14 C -0.113 4.113 15 O -0.073 6.073 16 C -0.126 4.126 17 N -0.113 5.113 18 N -0.090 5.090 19 C 0.106 3.894 20 C -0.583 4.583 21 H 0.100 0.900 22 C -0.124 4.124 23 N -0.520 5.520 24 Si 0.700 3.300 25 H -0.195 1.195 26 H -0.204 1.204 27 H -0.189 1.189 28 H 0.105 0.895 29 H 0.113 0.887 30 H 0.088 0.912 31 H 0.230 0.770 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.117 0.883 36 H 0.114 0.886 37 H 0.163 0.837 38 H 0.165 0.835 39 H 0.217 0.783 40 H 0.193 0.807 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.514 19.846 -5.370 21.049 hybrid contribution 0.154 -0.449 -0.199 0.515 sum 4.668 19.397 -5.569 20.713 Atomic orbital electron populations 1.20589 0.86774 1.03609 1.04199 1.21463 0.94931 0.86413 0.94055 1.19674 0.93046 0.92620 1.28980 1.17247 0.85046 0.83827 0.74185 1.90688 1.16705 1.84405 1.51613 1.45752 1.09606 1.05067 1.77527 1.20838 0.97483 0.80603 0.96731 0.89094 1.22183 1.02462 1.01530 0.95898 1.20476 1.00691 1.01226 0.86042 1.22251 0.96699 0.97878 0.89450 1.21548 1.03869 1.01748 0.94840 1.21859 1.02511 1.02299 0.96219 1.23985 0.99751 0.98279 0.89261 1.83989 1.54721 1.53980 1.14633 1.23702 0.96379 0.92516 1.00001 1.77133 0.98112 1.12403 1.23643 1.48880 1.02747 1.07514 1.49895 1.20151 0.95705 0.73353 1.00200 1.21094 1.47900 0.99314 0.89993 0.90045 1.24794 0.94284 0.97430 0.95856 1.69864 1.45185 1.18359 1.18545 0.86889 0.79089 0.81511 0.82532 1.19524 1.20396 1.18864 0.89539 0.88674 0.91163 0.77009 0.92312 0.91430 0.91725 0.88340 0.88610 0.83660 0.83510 0.78280 0.80735 0.93187 0.93001 0.91975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.68 9.56 36.01 0.34 -1.34 16 2 C 0.17 3.39 7.01 -81.60 -0.57 2.81 16 3 C -0.33 -5.91 6.13 -105.07 -0.64 -6.56 16 4 C 0.61 9.90 7.78 -12.52 -0.10 9.80 16 5 O -0.55 -10.45 14.51 5.28 0.08 -10.38 16 6 N -0.73 -8.58 4.67 -54.88 -0.26 -8.84 16 7 C 0.15 1.49 2.56 -67.93 -0.17 1.32 16 8 H 0.09 1.16 7.58 -51.93 -0.39 0.77 16 9 C -0.16 -1.39 9.48 37.16 0.35 -1.04 16 10 C -0.05 -0.36 5.29 -27.88 -0.15 -0.51 16 11 C -0.01 -0.14 6.33 -35.62 -0.23 -0.36 16 12 C -0.20 -2.19 10.68 -39.70 -0.42 -2.62 16 13 C -0.21 -2.33 10.91 -39.71 -0.43 -2.76 16 14 C -0.05 -0.48 12.09 29.41 0.36 -0.12 16 15 O -0.18 -2.09 10.65 5.72 0.06 -2.03 16 16 C 0.06 1.04 11.50 -16.98 -0.20 0.85 16 17 N -0.29 -6.18 12.50 30.86 0.39 -5.79 16 18 N -0.31 -6.95 3.56 -57.78 -0.21 -7.15 16 19 C 0.22 5.26 5.04 -5.20 -0.03 5.23 16 20 C -0.54 -15.02 9.94 -34.44 -0.34 -15.36 16 21 H 0.08 2.54 8.06 -52.49 -0.42 2.12 16 22 C 0.08 2.23 5.47 -17.82 -0.10 2.14 16 23 N -0.88 -25.96 13.96 55.43 0.77 -25.18 16 24 Si 0.87 19.84 27.47 -169.99 -4.67 15.17 16 25 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.26 -5.59 6.54 56.52 0.37 -5.22 16 28 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 29 H 0.09 1.62 6.52 -51.92 -0.34 1.28 16 30 H 0.07 1.18 7.05 -51.93 -0.37 0.81 16 31 H 0.40 3.77 7.56 -40.82 -0.31 3.46 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.15 1.33 8.06 -52.48 -0.42 0.91 16 38 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 39 H 0.20 1.38 8.06 -52.48 -0.42 0.96 16 40 H 0.18 2.10 7.50 -52.49 -0.39 1.71 16 41 H 0.05 1.15 7.58 -51.93 -0.39 0.76 16 42 H 0.05 1.14 6.06 -51.93 -0.31 0.82 16 43 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 367.06 15.07 5.53 5.53 Total: -1.00 -34.02 367.06 -6.53 -40.55 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: -5.90 Total: 6.64 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -2.33 Total: -8.52 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: 0.70 Total: -46.97 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.14 Total: -12.41 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -4.67 Total: 15.17 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.02 -6.53 -40.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888131597.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.898 kcal (2) G-P(sol) polarization free energy of solvation -34.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds