Wall clock time and date at job start Tue Mar 31 2020 12:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38053 * 126.29195 * 2 1 4 4 C 1.47423 * 126.41189 * 359.97438 * 3 2 1 5 5 O 1.21602 * 120.00723 * 0.31924 * 4 3 2 6 6 N 1.34787 * 119.99567 * 180.31502 * 4 3 2 7 7 C 1.46498 * 119.99847 * 180.02562 * 6 4 3 8 8 H 1.09004 * 109.47492 * 34.99713 * 7 6 4 9 9 C 1.53007 * 109.46935 * 275.00047 * 7 6 4 10 10 C 1.52994 * 109.47244 * 155.00369 * 7 6 4 11 11 C 1.50704 * 109.46875 * 294.99644 * 10 7 6 12 12 C 1.34518 * 125.78914 * 89.71680 * 11 10 7 13 13 C 1.41383 * 106.83858 * 179.89300 * 12 11 10 14 14 C 1.34506 * 106.84145 * 0.36865 * 13 12 11 15 15 O 1.34298 * 108.42451 * 359.77351 * 14 13 12 16 16 C 1.41282 * 107.16787 * 180.26278 * 3 2 1 17 17 N 1.30446 * 108.02455 * 359.74449 * 16 3 2 18 18 N 1.34260 * 126.28993 * 179.82352 * 2 1 3 19 19 C 1.46491 * 125.75289 * 359.97438 * 18 2 1 20 20 C 1.50702 * 109.46957 * 269.71589 * 19 18 2 21 21 H 1.08002 * 120.00299 * 0.02562 * 20 19 18 22 22 C 1.37884 * 119.99942 * 179.72213 * 20 19 18 23 23 N 1.31514 * 119.99985 * 180.27663 * 22 20 19 24 24 Si 1.86800 * 119.99777 * 0.28166 * 22 20 19 25 25 H 1.48498 * 109.47109 * 89.99834 * 24 22 20 26 26 H 1.48507 * 109.46754 * 209.99574 * 24 22 20 27 27 H 1.48498 * 109.47278 * 329.99405 * 24 22 20 28 28 H 1.09001 * 109.46825 * 270.18513 * 1 2 3 29 29 H 1.09009 * 109.47195 * 30.17303 * 1 2 3 30 30 H 1.09001 * 109.47700 * 150.17851 * 1 2 3 31 31 H 0.96999 * 119.99717 * 0.02562 * 6 4 3 32 32 H 1.08996 * 109.47052 * 300.00090 * 9 7 6 33 33 H 1.08995 * 109.47198 * 60.00219 * 9 7 6 34 34 H 1.09002 * 109.46948 * 179.97438 * 9 7 6 35 35 H 1.08997 * 109.47427 * 54.99523 * 10 7 6 36 36 H 1.09001 * 109.47390 * 175.00034 * 10 7 6 37 37 H 1.08004 * 126.57817 * 0.02562 * 12 11 10 38 38 H 1.08001 * 126.57512 * 180.12429 * 13 12 11 39 39 H 1.08007 * 125.78700 * 179.79890 * 14 13 12 40 40 H 1.08001 * 125.99061 * 179.77382 * 16 3 2 41 41 H 1.09004 * 109.47166 * 149.71854 * 19 18 2 42 42 H 1.08994 * 109.47507 * 29.71561 * 19 18 2 43 43 H 0.96996 * 119.99730 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3242 1.1127 0.0000 4 6 1.8858 2.5203 -0.0005 5 8 0.6996 2.7879 0.0048 6 7 2.8000 3.5107 -0.0069 7 6 2.3646 4.9095 -0.0068 8 1 1.4558 5.0072 0.5872 9 6 2.0854 5.3567 -1.4432 10 6 3.4643 5.7860 0.5955 11 6 3.6538 5.4275 2.0470 12 6 4.4959 4.4926 2.5229 13 6 4.3532 4.4909 3.9295 14 6 3.4266 5.4189 4.2284 15 8 3.0065 5.9830 3.0843 16 6 3.6590 0.6499 -0.0062 17 7 3.6340 -0.6543 -0.0041 18 7 2.3017 -1.0822 0.0033 19 6 1.8500 -2.4757 0.0082 20 6 1.7024 -2.9510 1.4306 21 1 1.9225 -2.2817 2.2492 22 6 1.2802 -4.2383 1.6871 23 7 1.1461 -4.6513 2.9285 24 14 0.8989 -5.3956 0.2713 25 1 2.1281 -6.1388 -0.1054 26 1 -0.1531 -6.3575 0.6879 27 1 0.4183 -4.6107 -0.8941 28 1 -0.3633 0.0033 1.0277 29 1 -0.3634 0.8885 -0.5166 30 1 -0.3634 -0.8916 -0.5110 31 1 3.7462 3.2973 -0.0115 32 1 2.9941 5.2591 -2.0372 33 1 1.3019 4.7323 -1.8724 34 1 1.7610 6.3973 -1.4431 35 1 4.3969 5.6212 0.0559 36 1 3.1783 6.8347 0.5148 37 1 5.1561 3.8655 1.9421 38 1 4.8833 3.8619 4.6294 39 1 3.0795 5.6684 5.2203 40 1 4.5449 1.2676 -0.0112 41 1 2.5821 -3.0967 -0.5082 42 1 0.8888 -2.5480 -0.5006 43 1 0.8495 -5.5570 3.1089 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888131597.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:14 Heat of formation + Delta-G solvation = 18.279594 kcal Electronic energy + Delta-G solvation = -26193.239871 eV Core-core repulsion = 22433.572471 eV Total energy + Delta-G solvation = -3759.667401 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.42858 -42.33146 -40.27636 -37.16131 -35.77868 -34.11893 -33.83827 -33.05861 -32.68397 -30.91247 -29.50026 -28.16991 -27.10123 -25.09646 -23.85443 -22.67937 -22.35175 -21.32559 -21.12911 -20.45017 -19.29578 -18.58237 -18.18144 -17.23541 -16.87032 -16.71369 -16.49357 -16.02610 -15.65825 -15.60411 -15.04474 -14.91739 -14.57474 -14.38308 -14.10803 -13.86418 -13.79478 -13.72645 -13.69851 -13.57622 -13.16163 -13.13337 -13.01288 -12.90378 -12.58382 -12.43020 -12.13635 -11.96077 -11.85874 -11.73456 -10.93236 -10.78858 -10.76442 -10.26652 -10.08373 -9.43191 -9.29895 -8.44081 -6.56268 0.66587 0.85799 1.32427 1.33387 1.35583 1.44289 1.62063 1.76267 2.16952 2.23747 2.39940 2.57946 2.88587 3.69325 3.71484 3.75586 3.90496 4.12250 4.16679 4.21024 4.22100 4.35948 4.39335 4.43021 4.53013 4.64172 4.67301 4.72391 4.81220 4.89294 4.98922 5.02934 5.05905 5.09704 5.16771 5.18509 5.31014 5.40830 5.60206 5.65181 5.69285 5.82731 6.20308 6.25858 6.46629 6.66103 6.81245 7.07639 7.41708 8.72566 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017285 B = 0.003205 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.479592 B = 8733.830358 C = 9548.958698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.144 3.856 3 C -0.329 4.329 4 C 0.605 3.395 5 O -0.585 6.585 6 N -0.708 5.708 7 C 0.148 3.852 8 H 0.060 0.940 9 C -0.156 4.156 10 C -0.038 4.038 11 C -0.024 4.024 12 C -0.217 4.217 13 C -0.235 4.235 14 C -0.053 4.053 15 O -0.194 6.194 16 C 0.082 3.918 17 N -0.333 5.333 18 N -0.338 5.338 19 C 0.233 3.767 20 C -0.554 4.554 21 H 0.024 0.976 22 C 0.023 3.977 23 N -0.936 5.936 24 Si 0.951 3.049 25 H -0.262 1.262 26 H -0.275 1.275 27 H -0.235 1.235 28 H 0.074 0.926 29 H 0.103 0.897 30 H 0.080 0.920 31 H 0.410 0.590 32 H 0.079 0.921 33 H 0.039 0.961 34 H 0.086 0.914 35 H 0.130 0.870 36 H 0.117 0.883 37 H 0.162 0.838 38 H 0.154 0.846 39 H 0.227 0.773 40 H 0.226 0.774 41 H 0.056 0.944 42 H 0.072 0.928 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.936 22.228 -7.887 24.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.009 3.991 3 C -0.344 4.344 4 C 0.394 3.606 5 O -0.467 6.467 6 N -0.360 5.360 7 C 0.044 3.956 8 H 0.078 0.922 9 C -0.214 4.214 10 C -0.075 4.075 11 C -0.073 4.073 12 C -0.236 4.236 13 C -0.254 4.254 14 C -0.120 4.120 15 O -0.091 6.091 16 C -0.106 4.106 17 N -0.152 5.152 18 N -0.115 5.115 19 C 0.114 3.886 20 C -0.592 4.592 21 H 0.042 0.958 22 C -0.177 4.177 23 N -0.574 5.574 24 Si 0.771 3.229 25 H -0.187 1.187 26 H -0.200 1.200 27 H -0.158 1.158 28 H 0.092 0.908 29 H 0.122 0.878 30 H 0.098 0.902 31 H 0.247 0.753 32 H 0.098 0.902 33 H 0.058 0.942 34 H 0.104 0.896 35 H 0.148 0.852 36 H 0.135 0.865 37 H 0.179 0.821 38 H 0.171 0.829 39 H 0.243 0.757 40 H 0.242 0.758 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.534 21.276 -7.797 23.326 hybrid contribution -0.086 -0.695 0.687 0.981 sum 5.448 20.582 -7.111 22.446 Atomic orbital electron populations 1.20572 0.85922 1.04493 1.03612 1.21965 0.95917 0.86803 0.94395 1.20011 0.93344 0.93239 1.27780 1.17112 0.85166 0.83891 0.74392 1.90675 1.18106 1.84704 1.53193 1.45627 1.09674 1.05165 1.75493 1.20942 0.97300 0.79697 0.97657 0.92164 1.22122 1.02589 1.02174 0.94503 1.20586 1.01124 1.01645 0.84177 1.22819 0.96331 0.97731 0.90439 1.21880 1.04467 1.02252 0.94990 1.22180 1.03252 1.03011 0.96961 1.24584 0.99446 0.97919 0.90067 1.83990 1.55229 1.54528 1.15328 1.24475 0.97607 0.91589 0.96883 1.77077 0.97950 1.14466 1.25699 1.48742 1.03511 1.07253 1.52001 1.19894 0.96784 0.74630 0.97321 1.21191 1.48096 0.98953 0.90953 0.95751 1.25834 0.93586 0.99258 0.99051 1.70026 1.46606 1.19233 1.21502 0.85683 0.79184 0.78813 0.79180 1.18693 1.19961 1.15759 0.90787 0.87841 0.90151 0.75347 0.90201 0.94160 0.89567 0.85233 0.86508 0.82056 0.82874 0.75706 0.75757 0.92582 0.91068 0.91632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.20 9.56 71.24 0.68 -2.52 16 2 C 0.14 5.85 7.01 42.14 0.30 6.15 16 3 C -0.33 -11.57 6.13 -20.15 -0.12 -11.70 16 4 C 0.61 19.13 7.78 86.66 0.67 19.81 16 5 O -0.59 -22.02 14.51 -4.04 -0.06 -22.08 16 6 N -0.71 -15.09 4.67 -445.79 -2.08 -17.17 16 7 C 0.15 2.65 2.56 44.99 0.12 2.77 16 8 H 0.06 1.49 7.58 -2.38 -0.02 1.47 16 9 C -0.16 -2.24 9.48 71.98 0.68 -1.55 16 10 C -0.04 -0.46 5.29 29.85 0.16 -0.30 16 11 C -0.02 -0.46 6.33 24.83 0.16 -0.30 16 12 C -0.22 -4.36 10.68 22.19 0.24 -4.13 16 13 C -0.23 -5.06 10.91 22.19 0.24 -4.81 16 14 C -0.05 -1.08 12.09 66.97 0.81 -0.27 16 15 O -0.19 -4.39 10.65 -2.46 -0.03 -4.42 16 16 C 0.08 2.62 11.50 85.65 0.99 3.61 16 17 N -0.33 -13.83 12.50 -56.28 -0.70 -14.54 16 18 N -0.34 -15.05 3.56 -336.71 -1.20 -16.25 16 19 C 0.23 10.91 5.04 85.64 0.43 11.34 16 20 C -0.55 -31.59 9.94 25.60 0.25 -31.33 16 21 H 0.02 1.61 8.06 -2.91 -0.02 1.59 16 22 C 0.02 1.28 5.47 84.66 0.46 1.74 16 23 N -0.94 -56.86 13.96 21.45 0.30 -56.56 16 24 Si 0.95 40.51 27.47 68.60 1.88 42.40 16 25 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 26 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 27 H -0.23 -8.83 6.54 99.48 0.65 -8.18 16 28 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 29 H 0.10 3.54 6.52 -2.38 -0.02 3.53 16 30 H 0.08 2.68 7.05 -2.39 -0.02 2.66 16 31 H 0.41 6.36 7.56 -92.71 -0.70 5.66 16 32 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.13 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.16 2.53 8.06 -2.91 -0.02 2.50 16 38 H 0.15 2.93 8.06 -2.91 -0.02 2.90 16 39 H 0.23 2.90 8.06 -2.91 -0.02 2.88 16 40 H 0.23 4.53 7.50 -2.91 -0.02 4.51 16 41 H 0.06 2.53 7.58 -2.38 -0.02 2.52 16 42 H 0.07 3.02 6.06 -2.39 -0.01 3.00 16 43 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -78.78 367.06 4.45 -74.32 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: 0.28 Total: 25.80 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: 6.06 Total: -11.49 kcal Atomic # 7 Polarization: -100.84 SS G_CDS: -3.69 Total: -104.52 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.08 Total: -26.50 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 1.88 Total: 42.40 kcal Total: -78.78 4.45 -74.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888131597.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.601 kcal (2) G-P(sol) polarization free energy of solvation -78.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.322 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds