Wall clock time and date at job start Tue Mar 31 2020 12:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38045 * 126.29180 * 2 1 4 4 C 1.47437 * 126.41480 * 0.02562 * 3 2 1 5 5 O 1.21599 * 119.99844 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99842 * 179.97438 * 4 3 2 7 7 C 1.46502 * 119.99649 * 179.97438 * 6 4 3 8 8 H 1.08994 * 109.47093 * 325.00149 * 7 6 4 9 9 C 1.53002 * 109.46754 * 85.00072 * 7 6 4 10 10 C 1.52997 * 109.46818 * 204.99760 * 7 6 4 11 11 C 1.50708 * 109.47127 * 65.00725 * 10 7 6 12 12 C 1.34506 * 125.79179 * 90.01288 * 11 10 7 13 13 C 1.41388 * 106.83998 * 179.97438 * 12 11 10 14 14 C 1.34515 * 106.83843 * 359.97438 * 13 12 11 15 15 O 1.34304 * 108.42331 * 0.02562 * 14 13 12 16 16 C 1.41291 * 107.17243 * 180.25957 * 3 2 1 17 17 N 1.30453 * 108.01966 * 359.59566 * 16 3 2 18 18 N 1.34260 * 126.29244 * 180.02562 * 2 1 3 19 19 C 1.46499 * 125.75101 * 359.97438 * 18 2 1 20 20 C 1.50704 * 109.47068 * 89.99951 * 19 18 2 21 21 H 1.08007 * 119.99929 * 359.97438 * 20 19 18 22 22 C 1.37871 * 119.99896 * 179.97438 * 20 19 18 23 23 N 1.31522 * 119.99781 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 120.00271 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47451 * 89.99769 * 24 22 20 26 26 H 1.48501 * 109.47189 * 210.00091 * 24 22 20 27 27 H 1.48504 * 109.46888 * 330.00134 * 24 22 20 28 28 H 1.09002 * 109.46854 * 89.97361 * 1 2 3 29 29 H 1.08992 * 109.46990 * 209.97613 * 1 2 3 30 30 H 1.09003 * 109.47091 * 329.97430 * 1 2 3 31 31 H 0.97000 * 119.99962 * 359.97438 * 6 4 3 32 32 H 1.08998 * 109.47050 * 299.99883 * 9 7 6 33 33 H 1.09001 * 109.47080 * 59.99883 * 9 7 6 34 34 H 1.08998 * 109.46926 * 179.97438 * 9 7 6 35 35 H 1.08998 * 109.47369 * 305.00177 * 10 7 6 36 36 H 1.09005 * 109.46999 * 184.99993 * 10 7 6 37 37 H 1.08000 * 126.58117 * 359.96027 * 12 11 10 38 38 H 1.08001 * 126.57691 * 180.26094 * 13 12 11 39 39 H 1.07998 * 125.78442 * 180.02562 * 14 13 12 40 40 H 1.07997 * 125.98921 * 179.73763 * 16 3 2 41 41 H 1.08996 * 109.46628 * 209.99508 * 19 18 2 42 42 H 1.08994 * 109.47257 * 329.99757 * 19 18 2 43 43 H 0.97001 * 119.99656 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5204 0.0005 5 8 0.6996 2.7878 0.0006 6 7 2.8000 3.5107 0.0010 7 6 2.3644 4.9095 0.0009 8 1 1.4529 5.0062 -0.5888 9 6 2.0922 5.3589 1.4379 10 6 3.4613 5.7851 -0.6081 11 6 3.6438 5.4244 -2.0600 12 6 2.9910 5.9798 -3.0966 13 6 3.4681 5.3472 -4.2675 14 6 4.3845 4.4435 -3.8764 15 8 4.4866 4.4945 -2.5382 16 6 3.6591 0.6499 -0.0061 17 7 3.6341 -0.6544 -0.0008 18 7 2.3017 -1.0821 -0.0005 19 6 1.8501 -2.4758 -0.0006 20 6 1.6947 -2.9534 -1.4215 21 1 1.9104 -2.2854 -2.2423 22 6 1.2772 -4.2430 -1.6735 23 7 1.1411 -4.6596 -2.9135 24 14 0.9035 -5.3980 -0.2538 25 1 -0.5276 -5.2729 0.1227 26 1 1.1866 -6.7964 -0.6657 27 1 1.7544 -5.0429 0.9104 28 1 -0.3633 0.0005 -1.0277 29 1 -0.3633 -0.8901 0.5134 30 1 -0.3633 0.8898 0.5142 31 1 3.7462 3.2973 0.0013 32 1 1.3108 4.7350 1.8718 33 1 3.0038 5.2621 2.0277 34 1 1.7686 6.3997 1.4380 35 1 4.3964 5.6211 -0.0726 36 1 3.1756 6.8340 -0.5275 37 1 2.2452 6.7593 -3.0444 38 1 3.1598 5.5536 -5.2818 39 1 4.9432 3.7881 -4.5280 40 1 4.5449 1.2677 -0.0117 41 1 2.5849 -3.0958 0.5128 42 1 0.8917 -2.5472 0.5136 43 1 0.8470 -5.5668 -3.0908 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888131598.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:17 Heat of formation + Delta-G solvation = 40.869462 kcal Electronic energy + Delta-G solvation = -26203.370103 eV Core-core repulsion = 22444.682272 eV Total energy + Delta-G solvation = -3758.687831 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.61893 -40.83449 -39.04693 -36.11806 -33.91883 -33.12526 -32.36491 -31.83106 -31.20238 -30.00341 -27.75789 -26.70842 -26.39424 -23.35460 -22.47138 -21.86553 -21.29155 -20.45844 -19.83342 -18.95746 -17.56039 -17.21667 -17.03390 -16.26368 -15.82972 -15.25021 -15.00832 -14.78023 -14.43443 -14.16119 -13.83373 -13.45703 -13.42862 -13.13373 -12.90439 -12.82891 -12.70404 -12.55205 -12.38928 -12.24306 -12.17267 -12.05455 -11.70308 -11.58239 -11.23111 -11.18939 -10.83531 -10.39244 -10.20497 -9.97897 -9.78718 -9.39216 -8.98892 -8.84361 -8.62497 -8.50324 -7.93265 -6.32327 -4.36876 1.66567 2.16572 2.55307 2.76170 2.91018 3.06553 3.12671 3.18648 3.22897 3.52773 3.92165 4.16216 4.47339 4.60845 4.81962 4.92994 4.93923 5.06449 5.10301 5.18878 5.21353 5.26865 5.39349 5.51472 5.57510 5.67916 5.73348 5.80024 5.85316 5.94652 6.03519 6.06877 6.10956 6.27963 6.41985 6.45917 6.50307 6.61824 6.67404 7.04828 7.06793 7.19287 7.58634 7.77603 8.20910 8.30668 8.63907 8.71131 9.21641 10.79970 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017269 B = 0.003225 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.997089 B = 8680.933009 C = 9502.352563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.167 3.833 3 C -0.328 4.328 4 C 0.607 3.393 5 O -0.556 6.556 6 N -0.728 5.728 7 C 0.148 3.852 8 H 0.092 0.908 9 C -0.163 4.163 10 C -0.048 4.048 11 C -0.010 4.010 12 C -0.210 4.210 13 C -0.216 4.216 14 C -0.037 4.037 15 O -0.172 6.172 16 C 0.062 3.938 17 N -0.293 5.293 18 N -0.314 5.314 19 C 0.225 3.775 20 C -0.545 4.545 21 H 0.081 0.919 22 C 0.081 3.919 23 N -0.883 5.883 24 Si 0.873 3.127 25 H -0.270 1.270 26 H -0.278 1.278 27 H -0.263 1.263 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.095 0.905 31 H 0.398 0.602 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.201 0.799 40 H 0.176 0.824 41 H 0.055 0.945 42 H 0.048 0.952 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.531 21.365 5.212 22.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.031 3.969 3 C -0.344 4.344 4 C 0.397 3.603 5 O -0.435 6.435 6 N -0.380 5.380 7 C 0.043 3.957 8 H 0.110 0.890 9 C -0.221 4.221 10 C -0.085 4.085 11 C -0.060 4.060 12 C -0.229 4.229 13 C -0.235 4.235 14 C -0.105 4.105 15 O -0.067 6.067 16 C -0.125 4.125 17 N -0.113 5.113 18 N -0.091 5.091 19 C 0.106 3.894 20 C -0.583 4.583 21 H 0.099 0.901 22 C -0.124 4.124 23 N -0.520 5.520 24 Si 0.698 3.302 25 H -0.195 1.195 26 H -0.204 1.204 27 H -0.188 1.188 28 H 0.105 0.895 29 H 0.088 0.912 30 H 0.113 0.887 31 H 0.232 0.768 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.105 0.895 36 H 0.125 0.875 37 H 0.163 0.837 38 H 0.164 0.836 39 H 0.218 0.782 40 H 0.193 0.807 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.502 19.955 5.275 21.126 hybrid contribution -0.179 -0.116 0.078 0.227 sum 4.322 19.839 5.353 20.998 Atomic orbital electron populations 1.20586 0.86764 1.03614 1.04183 1.21464 0.94927 0.86433 0.94103 1.19685 0.93063 0.92634 1.28992 1.17251 0.85032 0.83849 0.74174 1.90681 1.16681 1.84429 1.51715 1.45765 1.09743 1.05054 1.77435 1.20881 0.97448 0.80662 0.96689 0.89006 1.22186 1.02497 1.01484 0.95946 1.20517 1.00370 1.00693 0.86936 1.22253 0.94765 0.92777 0.96189 1.21555 1.04544 1.04981 0.91850 1.21816 1.01237 1.00500 0.99987 1.24040 1.02745 1.02624 0.81081 1.84005 1.52029 1.48659 1.22050 1.23733 0.96445 0.92491 0.99842 1.77141 0.98044 1.12399 1.23699 1.48884 1.02775 1.07488 1.49922 1.20140 0.95687 0.73387 1.00184 1.21096 1.47982 0.99168 0.90027 0.90057 1.24791 0.94298 0.97403 0.95872 1.69869 1.45204 1.18239 1.18666 0.86903 0.79523 0.81030 0.82715 1.19496 1.20361 1.18777 0.89550 0.91177 0.88662 0.76815 0.91416 0.92332 0.91718 0.89486 0.87451 0.83701 0.83646 0.78194 0.80665 0.92749 0.93455 0.91987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.68 9.57 36.01 0.34 -1.34 16 2 C 0.17 3.41 7.01 -81.60 -0.57 2.83 16 3 C -0.33 -6.04 6.13 -105.06 -0.64 -6.69 16 4 C 0.61 10.08 7.78 -12.51 -0.10 9.98 16 5 O -0.56 -10.50 14.50 5.28 0.08 -10.42 16 6 N -0.73 -8.98 4.78 -54.88 -0.26 -9.24 16 7 C 0.15 1.49 2.56 -67.93 -0.17 1.31 16 8 H 0.09 1.12 7.58 -51.93 -0.39 0.73 16 9 C -0.16 -1.39 9.48 37.16 0.35 -1.04 16 10 C -0.05 -0.36 5.29 -27.88 -0.15 -0.51 16 11 C -0.01 -0.10 6.30 -35.62 -0.22 -0.33 16 12 C -0.21 -2.25 10.81 -39.70 -0.43 -2.68 16 13 C -0.22 -2.33 10.91 -39.70 -0.43 -2.77 16 14 C -0.04 -0.40 12.09 29.42 0.36 -0.05 16 15 O -0.17 -2.03 10.65 5.70 0.06 -1.97 16 16 C 0.06 1.09 11.50 -16.98 -0.20 0.90 16 17 N -0.29 -6.28 12.50 30.86 0.39 -5.90 16 18 N -0.31 -7.03 3.56 -57.77 -0.21 -7.23 16 19 C 0.22 5.29 5.03 -5.19 -0.03 5.27 16 20 C -0.54 -15.06 9.94 -34.44 -0.34 -15.40 16 21 H 0.08 2.55 8.06 -52.48 -0.42 2.12 16 22 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 23 N -0.88 -26.01 13.96 55.43 0.77 -25.24 16 24 Si 0.87 19.87 27.47 -169.99 -4.67 15.20 16 25 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.26 -5.71 6.54 56.52 0.37 -5.34 16 28 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 29 H 0.07 1.18 7.05 -51.93 -0.37 0.81 16 30 H 0.09 1.63 6.50 -51.93 -0.34 1.29 16 31 H 0.40 4.23 7.56 -40.82 -0.31 3.92 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 38 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 39 H 0.20 1.58 8.06 -52.49 -0.42 1.15 16 40 H 0.18 2.27 7.50 -52.49 -0.39 1.87 16 41 H 0.05 1.28 7.20 -51.93 -0.37 0.91 16 42 H 0.05 1.03 6.44 -51.93 -0.33 0.69 16 43 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 367.28 15.07 5.53 5.53 Total: -1.00 -33.90 367.28 -6.54 -40.43 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -5.90 Total: 7.20 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -2.33 Total: -8.36 kcal Atomic # 7 Polarization: -48.30 SS G_CDS: 0.69 Total: -47.61 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.14 Total: -12.39 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -4.67 Total: 15.20 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.90 -6.54 -40.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888131598.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.303 kcal (2) G-P(sol) polarization free energy of solvation -33.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds