Wall clock time and date at job start Tue Mar 31 2020 12:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38045 * 126.29180 * 2 1 4 4 C 1.47437 * 126.41480 * 0.02562 * 3 2 1 5 5 O 1.21599 * 119.99844 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99842 * 179.97438 * 4 3 2 7 7 C 1.46502 * 119.99649 * 179.97438 * 6 4 3 8 8 H 1.08994 * 109.47093 * 325.00149 * 7 6 4 9 9 C 1.53002 * 109.46754 * 85.00072 * 7 6 4 10 10 C 1.52997 * 109.46818 * 204.99760 * 7 6 4 11 11 C 1.50708 * 109.47127 * 65.00725 * 10 7 6 12 12 C 1.34506 * 125.79179 * 90.01288 * 11 10 7 13 13 C 1.41388 * 106.83998 * 179.97438 * 12 11 10 14 14 C 1.34515 * 106.83843 * 359.97438 * 13 12 11 15 15 O 1.34304 * 108.42331 * 0.02562 * 14 13 12 16 16 C 1.41291 * 107.17243 * 180.25957 * 3 2 1 17 17 N 1.30453 * 108.01966 * 359.59566 * 16 3 2 18 18 N 1.34260 * 126.29244 * 180.02562 * 2 1 3 19 19 C 1.46499 * 125.75101 * 359.97438 * 18 2 1 20 20 C 1.50704 * 109.47068 * 89.99951 * 19 18 2 21 21 H 1.08007 * 119.99929 * 359.97438 * 20 19 18 22 22 C 1.37871 * 119.99896 * 179.97438 * 20 19 18 23 23 N 1.31522 * 119.99781 * 179.97438 * 22 20 19 24 24 Si 1.86796 * 120.00271 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47451 * 89.99769 * 24 22 20 26 26 H 1.48501 * 109.47189 * 210.00091 * 24 22 20 27 27 H 1.48504 * 109.46888 * 330.00134 * 24 22 20 28 28 H 1.09002 * 109.46854 * 89.97361 * 1 2 3 29 29 H 1.08992 * 109.46990 * 209.97613 * 1 2 3 30 30 H 1.09003 * 109.47091 * 329.97430 * 1 2 3 31 31 H 0.97000 * 119.99962 * 359.97438 * 6 4 3 32 32 H 1.08998 * 109.47050 * 299.99883 * 9 7 6 33 33 H 1.09001 * 109.47080 * 59.99883 * 9 7 6 34 34 H 1.08998 * 109.46926 * 179.97438 * 9 7 6 35 35 H 1.08998 * 109.47369 * 305.00177 * 10 7 6 36 36 H 1.09005 * 109.46999 * 184.99993 * 10 7 6 37 37 H 1.08000 * 126.58117 * 359.96027 * 12 11 10 38 38 H 1.08001 * 126.57691 * 180.26094 * 13 12 11 39 39 H 1.07998 * 125.78442 * 180.02562 * 14 13 12 40 40 H 1.07997 * 125.98921 * 179.73763 * 16 3 2 41 41 H 1.08996 * 109.46628 * 209.99508 * 19 18 2 42 42 H 1.08994 * 109.47257 * 329.99757 * 19 18 2 43 43 H 0.97001 * 119.99656 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5204 0.0005 5 8 0.6996 2.7878 0.0006 6 7 2.8000 3.5107 0.0010 7 6 2.3644 4.9095 0.0009 8 1 1.4529 5.0062 -0.5888 9 6 2.0922 5.3589 1.4379 10 6 3.4613 5.7851 -0.6081 11 6 3.6438 5.4244 -2.0600 12 6 2.9910 5.9798 -3.0966 13 6 3.4681 5.3472 -4.2675 14 6 4.3845 4.4435 -3.8764 15 8 4.4866 4.4945 -2.5382 16 6 3.6591 0.6499 -0.0061 17 7 3.6341 -0.6544 -0.0008 18 7 2.3017 -1.0821 -0.0005 19 6 1.8501 -2.4758 -0.0006 20 6 1.6947 -2.9534 -1.4215 21 1 1.9104 -2.2854 -2.2423 22 6 1.2772 -4.2430 -1.6735 23 7 1.1411 -4.6596 -2.9135 24 14 0.9035 -5.3980 -0.2538 25 1 -0.5276 -5.2729 0.1227 26 1 1.1866 -6.7964 -0.6657 27 1 1.7544 -5.0429 0.9104 28 1 -0.3633 0.0005 -1.0277 29 1 -0.3633 -0.8901 0.5134 30 1 -0.3633 0.8898 0.5142 31 1 3.7462 3.2973 0.0013 32 1 1.3108 4.7350 1.8718 33 1 3.0038 5.2621 2.0277 34 1 1.7686 6.3997 1.4380 35 1 4.3964 5.6211 -0.0726 36 1 3.1756 6.8340 -0.5275 37 1 2.2452 6.7593 -3.0444 38 1 3.1598 5.5536 -5.2818 39 1 4.9432 3.7881 -4.5280 40 1 4.5449 1.2677 -0.0117 41 1 2.5849 -3.0958 0.5128 42 1 0.8917 -2.5472 0.5136 43 1 0.8470 -5.5668 -3.0908 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888131598.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:16 Heat of formation + Delta-G solvation = 18.018221 kcal Electronic energy + Delta-G solvation = -26204.361007 eV Core-core repulsion = 22444.682272 eV Total energy + Delta-G solvation = -3759.678735 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.41581 -42.34302 -40.27353 -37.13205 -35.78474 -34.16573 -33.88229 -33.03322 -32.68192 -30.87710 -29.49989 -28.17433 -27.11367 -25.09811 -23.84645 -22.67984 -22.36461 -21.30685 -21.13083 -20.46333 -19.29778 -18.62905 -18.14102 -17.22412 -16.86512 -16.68331 -16.50962 -16.03896 -15.71463 -15.56244 -15.11928 -14.93863 -14.49773 -14.22436 -14.14434 -14.00317 -13.79797 -13.71024 -13.69721 -13.57579 -13.21432 -13.14936 -13.01262 -12.81235 -12.56857 -12.45440 -12.16565 -11.96116 -11.86239 -11.73734 -10.92826 -10.81319 -10.75903 -10.27616 -10.09616 -9.45125 -9.29305 -8.44232 -6.56510 0.65585 0.86355 1.30590 1.33198 1.34650 1.44836 1.62067 1.74705 2.18127 2.23858 2.38608 2.56367 2.88161 3.67684 3.70739 3.78011 3.90500 4.11493 4.17325 4.18931 4.20706 4.32424 4.37807 4.44967 4.53655 4.65843 4.67406 4.71775 4.80584 4.89651 4.96893 5.02781 5.04595 5.09795 5.16457 5.18248 5.30288 5.41216 5.58827 5.63741 5.69600 5.82414 6.19891 6.26310 6.46228 6.63928 6.79393 7.07457 7.39792 8.72401 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017269 B = 0.003225 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.997089 B = 8680.933009 C = 9502.352563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.146 3.854 3 C -0.330 4.330 4 C 0.605 3.395 5 O -0.583 6.583 6 N -0.711 5.711 7 C 0.147 3.853 8 H 0.068 0.932 9 C -0.156 4.156 10 C -0.039 4.039 11 C -0.019 4.019 12 C -0.228 4.228 13 C -0.233 4.233 14 C -0.054 4.054 15 O -0.186 6.186 16 C 0.081 3.919 17 N -0.332 5.332 18 N -0.338 5.338 19 C 0.234 3.766 20 C -0.554 4.554 21 H 0.024 0.976 22 C 0.023 3.977 23 N -0.935 5.935 24 Si 0.950 3.050 25 H -0.252 1.252 26 H -0.277 1.277 27 H -0.242 1.242 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.104 0.896 31 H 0.408 0.592 32 H 0.039 0.961 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.138 0.862 37 H 0.160 0.840 38 H 0.158 0.842 39 H 0.221 0.779 40 H 0.222 0.778 41 H 0.057 0.943 42 H 0.071 0.929 43 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.163 22.838 7.530 24.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.010 3.990 3 C -0.345 4.345 4 C 0.394 3.606 5 O -0.464 6.464 6 N -0.363 5.363 7 C 0.042 3.958 8 H 0.086 0.914 9 C -0.214 4.214 10 C -0.076 4.076 11 C -0.069 4.069 12 C -0.247 4.247 13 C -0.252 4.252 14 C -0.121 4.121 15 O -0.083 6.083 16 C -0.107 4.107 17 N -0.152 5.152 18 N -0.115 5.115 19 C 0.114 3.886 20 C -0.592 4.592 21 H 0.043 0.957 22 C -0.177 4.177 23 N -0.573 5.573 24 Si 0.771 3.229 25 H -0.176 1.176 26 H -0.202 1.202 27 H -0.165 1.165 28 H 0.093 0.907 29 H 0.099 0.901 30 H 0.122 0.878 31 H 0.244 0.756 32 H 0.058 0.942 33 H 0.093 0.907 34 H 0.109 0.891 35 H 0.126 0.874 36 H 0.156 0.844 37 H 0.178 0.822 38 H 0.176 0.824 39 H 0.237 0.763 40 H 0.238 0.762 41 H 0.075 0.925 42 H 0.089 0.911 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.165 21.487 7.599 23.369 hybrid contribution -0.324 -0.383 -0.773 0.921 sum 4.841 21.104 6.826 22.702 Atomic orbital electron populations 1.20580 0.85744 1.04586 1.03668 1.21978 0.95972 0.86718 0.94310 1.20038 0.93275 0.93387 1.27828 1.17100 0.85176 0.83856 0.74423 1.90667 1.17902 1.84690 1.53192 1.45700 1.09643 1.05458 1.75474 1.21044 0.97488 0.79456 0.97765 0.91373 1.22125 1.02430 1.02400 0.94462 1.20634 1.00335 1.01612 0.84994 1.22828 0.94283 0.92278 0.97550 1.21910 1.05082 1.05648 0.92024 1.22160 1.01419 1.00701 1.00910 1.24555 1.03226 1.03167 0.81178 1.83992 1.52587 1.49206 1.22474 1.24436 0.97641 0.91610 0.96965 1.77081 0.98009 1.14363 1.25722 1.48758 1.03473 1.07284 1.51961 1.19892 0.96801 0.74541 0.97373 1.21185 1.48249 0.98859 0.90925 0.95748 1.25831 0.93564 0.99205 0.99103 1.70031 1.46587 1.19108 1.21612 0.85688 0.80477 0.77779 0.78985 1.17589 1.20181 1.16538 0.90716 0.90052 0.87773 0.75573 0.94150 0.90661 0.89119 0.87405 0.84367 0.82216 0.82443 0.76274 0.76167 0.92508 0.91144 0.91622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.19 9.57 71.24 0.68 -2.51 16 2 C 0.15 5.96 7.01 42.14 0.30 6.26 16 3 C -0.33 -11.95 6.13 -20.15 -0.12 -12.07 16 4 C 0.61 19.58 7.78 86.67 0.67 20.26 16 5 O -0.58 -21.92 14.50 -4.03 -0.06 -21.98 16 6 N -0.71 -16.13 4.78 -445.80 -2.13 -18.27 16 7 C 0.15 2.60 2.56 44.99 0.12 2.72 16 8 H 0.07 1.58 7.58 -2.39 -0.02 1.56 16 9 C -0.16 -2.22 9.48 71.98 0.68 -1.53 16 10 C -0.04 -0.46 5.29 29.85 0.16 -0.30 16 11 C -0.02 -0.37 6.30 24.83 0.16 -0.22 16 12 C -0.23 -4.58 10.81 22.19 0.24 -4.34 16 13 C -0.23 -4.87 10.91 22.19 0.24 -4.63 16 14 C -0.05 -1.13 12.09 66.97 0.81 -0.32 16 15 O -0.19 -4.15 10.65 -2.51 -0.03 -4.18 16 16 C 0.08 2.72 11.50 85.65 0.99 3.70 16 17 N -0.33 -14.18 12.50 -56.27 -0.70 -14.88 16 18 N -0.34 -15.24 3.56 -336.70 -1.20 -16.44 16 19 C 0.23 11.00 5.03 85.63 0.43 11.43 16 20 C -0.55 -31.71 9.94 25.60 0.25 -31.46 16 21 H 0.02 1.62 8.06 -2.91 -0.02 1.60 16 22 C 0.02 1.30 5.47 84.65 0.46 1.76 16 23 N -0.94 -56.87 13.96 21.45 0.30 -56.57 16 24 Si 0.95 40.57 27.47 68.60 1.88 42.45 16 25 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 26 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 27 H -0.24 -9.46 6.54 99.48 0.65 -8.81 16 28 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 29 H 0.08 2.70 7.05 -2.39 -0.02 2.69 16 30 H 0.10 3.56 6.50 -2.39 -0.02 3.55 16 31 H 0.41 7.51 7.56 -92.71 -0.70 6.81 16 32 H 0.04 0.81 8.14 -2.39 -0.02 0.80 16 33 H 0.07 0.83 8.14 -2.39 -0.02 0.82 16 34 H 0.09 0.83 8.14 -2.39 -0.02 0.82 16 35 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.14 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 38 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 39 H 0.22 3.32 8.06 -2.91 -0.02 3.30 16 40 H 0.22 5.03 7.50 -2.91 -0.02 5.00 16 41 H 0.06 2.63 7.20 -2.39 -0.02 2.61 16 42 H 0.07 2.96 6.44 -2.39 -0.02 2.95 16 43 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -77.78 367.28 4.41 -73.37 By element: Atomic # 1 Polarization: 27.48 SS G_CDS: 0.28 Total: 27.76 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: 6.07 Total: -11.26 kcal Atomic # 7 Polarization: -102.42 SS G_CDS: -3.74 Total: -106.16 kcal Atomic # 8 Polarization: -26.08 SS G_CDS: -0.09 Total: -26.16 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 1.88 Total: 42.45 kcal Total: -77.78 4.41 -73.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888131598.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.391 kcal (2) G-P(sol) polarization free energy of solvation -77.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds