Wall clock time and date at job start Tue Mar 31 2020 11:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34515 * 125.79319 * 2 1 4 4 C 1.41376 * 106.84242 * 179.73499 * 3 2 1 5 5 C 1.34516 * 106.84089 * 0.02562 * 4 3 2 6 6 C 1.50708 * 125.78754 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47007 * 89.99901 * 6 5 4 8 8 N 1.46493 * 109.47019 * 179.97438 * 7 6 5 9 9 C 1.34771 * 120.00145 * 180.02562 * 8 7 6 10 10 O 1.21609 * 119.99955 * 359.97438 * 9 8 7 11 11 C 1.47434 * 120.00185 * 179.97438 * 9 8 7 12 12 C 1.41285 * 126.41499 * 359.68702 * 11 9 8 13 13 N 1.30447 * 108.02311 * 179.87782 * 12 11 9 14 14 N 1.39932 * 108.89794 * 0.38397 * 13 12 11 15 15 C 1.46501 * 125.75637 * 179.77519 * 14 13 12 16 16 C 1.50698 * 109.46685 * 269.97364 * 15 14 13 17 17 H 1.08002 * 120.00491 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99673 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00116 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99982 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46876 * 89.99994 * 20 18 16 22 22 H 1.48500 * 109.47113 * 210.00179 * 20 18 16 23 23 H 1.48504 * 109.47004 * 330.00149 * 20 18 16 24 24 C 1.34264 * 108.49049 * 359.74919 * 14 13 12 25 25 C 1.50698 * 126.28896 * 179.97438 * 24 14 13 26 26 O 1.34298 * 108.42070 * 0.02562 * 5 4 3 27 27 H 1.09007 * 109.47122 * 90.00090 * 1 2 3 28 28 H 1.09004 * 109.47299 * 210.00077 * 1 2 3 29 29 H 1.09003 * 109.47154 * 330.00412 * 1 2 3 30 30 H 1.07995 * 126.57546 * 359.70154 * 3 2 1 31 31 H 1.08003 * 126.57866 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.46884 * 209.99804 * 6 5 4 33 33 H 1.09003 * 109.47129 * 329.99652 * 6 5 4 34 34 H 1.09003 * 109.46984 * 300.00168 * 7 6 5 35 35 H 1.08999 * 109.46938 * 60.00063 * 7 6 5 36 36 H 0.97007 * 120.00204 * 359.97438 * 8 7 6 37 37 H 1.08006 * 125.98950 * 359.97438 * 12 11 9 38 38 H 1.08998 * 109.47128 * 29.97226 * 15 14 13 39 39 H 1.08998 * 109.47082 * 149.97678 * 15 14 13 40 40 H 0.97006 * 119.99692 * 179.97438 * 19 18 16 41 41 H 1.09007 * 109.46729 * 269.99837 * 25 24 14 42 42 H 1.08997 * 109.47259 * 30.00149 * 25 24 14 43 43 H 1.08998 * 109.47107 * 150.00587 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6320 0.0063 5 6 3.5813 -0.7123 0.0091 6 6 4.7705 -1.6380 0.0164 7 6 5.1667 -1.9479 1.4614 8 7 6.3223 -2.8482 1.4685 9 6 6.8486 -3.2599 2.6389 10 8 6.3645 -2.8837 3.6891 11 6 8.0113 -4.1665 2.6460 12 6 8.6738 -4.6897 1.5131 13 7 9.6512 -5.4460 1.9307 14 7 9.6552 -5.4500 3.3300 15 6 10.5951 -6.1836 4.1813 16 6 10.0433 -7.5552 4.4729 17 1 9.0882 -7.8511 4.0647 18 6 10.7582 -8.4328 5.2602 19 7 11.9215 -8.0726 5.7570 20 14 10.0745 -10.1334 5.6212 21 1 10.5349 -11.0837 4.5771 22 1 10.5548 -10.5879 6.9508 23 1 8.5904 -10.0802 5.6225 24 6 8.6527 -4.6677 3.7609 25 6 8.2933 -4.3888 5.1976 26 8 2.2923 -1.0895 0.0044 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.9666 2.1203 -0.0045 31 1 4.5212 1.2433 0.0076 32 1 4.5127 -2.5646 -0.4964 33 1 5.6061 -1.1601 -0.4949 34 1 5.4244 -1.0212 1.9742 35 1 4.3311 -2.4258 1.9727 36 1 6.7082 -3.1487 0.6308 37 1 8.4172 -4.4960 0.4821 38 1 11.5521 -6.2785 3.6682 39 1 10.7365 -5.6423 5.1168 40 1 12.4242 -8.6900 6.3111 41 1 7.5741 -5.1316 5.5430 42 1 9.1914 -4.4389 5.8131 43 1 7.8542 -3.3943 5.2758 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888175704.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:53 Heat of formation + Delta-G solvation = 32.269332 kcal Electronic energy + Delta-G solvation = -24887.261939 eV Core-core repulsion = 21128.201178 eV Total energy + Delta-G solvation = -3759.060760 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.85970 -40.77773 -38.84119 -35.59457 -33.91447 -33.44300 -32.96333 -32.05219 -31.19547 -30.40088 -27.58948 -26.71969 -25.86036 -23.66071 -22.98930 -22.00779 -21.79890 -20.45659 -19.83948 -18.99825 -17.21951 -16.80548 -16.77390 -16.36307 -15.61121 -15.54580 -15.14565 -14.65031 -14.46455 -14.40565 -13.87796 -13.78021 -13.40313 -13.35146 -13.09312 -13.07003 -12.72924 -12.56613 -12.43255 -12.26203 -12.17114 -12.08035 -11.77182 -11.53325 -11.46755 -11.11986 -10.88746 -10.37167 -10.18960 -10.13349 -9.93604 -9.42636 -8.99418 -8.71081 -8.58813 -8.54824 -7.91314 -6.33645 -4.41394 1.40655 2.19222 2.32493 2.56095 2.79592 3.18209 3.19181 3.24863 3.30665 3.57462 3.92252 4.24357 4.36506 4.57878 4.65542 4.74684 4.77640 5.00269 5.04812 5.06818 5.11884 5.15437 5.27157 5.33628 5.52166 5.55218 5.58937 5.73075 5.77761 5.81291 5.89407 5.95856 6.13780 6.26676 6.41900 6.52944 6.60973 6.79981 6.90718 6.90880 7.15901 7.56079 7.71386 7.77119 7.79266 8.37726 8.60034 8.64441 9.25475 10.74528 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.028364 B = 0.002055 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.926052 B =13620.592389 C =13879.347397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.016 4.016 3 C -0.212 4.212 4 C -0.202 4.202 5 C -0.008 4.008 6 C -0.051 4.051 7 C 0.128 3.872 8 N -0.736 5.736 9 C 0.604 3.396 10 O -0.555 6.555 11 C -0.333 4.333 12 C 0.057 3.943 13 N -0.296 5.296 14 N -0.314 5.314 15 C 0.251 3.749 16 C -0.540 4.540 17 H 0.065 0.935 18 C 0.067 3.933 19 N -0.889 5.889 20 Si 0.908 3.092 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.271 1.271 24 C 0.166 3.834 25 C -0.093 4.093 26 O -0.173 6.173 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.147 0.853 31 H 0.149 0.851 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.399 0.601 37 H 0.176 0.824 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.269 0.731 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.115 16.410 -11.764 26.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.066 4.066 3 C -0.232 4.232 4 C -0.221 4.221 5 C -0.059 4.059 6 C -0.088 4.088 7 C 0.004 3.996 8 N -0.389 5.389 9 C 0.395 3.605 10 O -0.434 6.434 11 C -0.349 4.349 12 C -0.130 4.130 13 N -0.116 5.116 14 N -0.091 5.091 15 C 0.134 3.866 16 C -0.578 4.578 17 H 0.083 0.917 18 C -0.137 4.137 19 N -0.527 5.527 20 Si 0.735 3.265 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.196 1.196 24 C 0.028 3.972 25 C -0.151 4.151 26 O -0.070 6.070 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.106 0.894 30 H 0.165 0.835 31 H 0.167 0.833 32 H 0.107 0.893 33 H 0.119 0.881 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.233 0.767 37 H 0.193 0.807 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.102 0.898 42 H 0.091 0.909 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -16.286 15.460 -11.153 25.072 hybrid contribution -0.609 -0.404 -0.117 0.740 sum -16.894 15.056 -11.270 25.281 Atomic orbital electron populations 1.20308 0.85151 1.04130 1.03453 1.22455 0.94030 0.84177 1.05938 1.21568 0.92741 0.99385 1.09466 1.21603 0.98316 0.93826 1.08344 1.22049 0.82881 0.94303 1.06653 1.20288 0.91949 0.98625 0.97944 1.21183 0.88965 0.94491 0.94923 1.45661 1.33349 1.50955 1.08951 1.17298 0.81639 0.78732 0.82829 1.90702 1.62687 1.58545 1.31431 1.19653 1.06686 1.15643 0.92886 1.23716 0.94306 0.96405 0.98537 1.77134 1.22130 1.21952 0.90345 1.49367 1.23119 1.32365 1.04206 1.19858 0.87474 0.91289 0.88025 1.21245 1.06431 0.97632 1.32489 0.91664 1.24927 0.94649 0.99160 0.94950 1.69916 1.12700 1.36724 1.33351 0.86320 0.79408 0.82984 0.77795 1.20250 1.20787 1.19599 1.21483 0.88591 0.90480 0.96604 1.20572 1.02388 1.03889 0.88254 1.83964 1.16350 1.35132 1.71532 0.90155 0.90481 0.89356 0.83535 0.83342 0.89255 0.88057 0.91125 0.91316 0.76727 0.80740 0.92502 0.92531 0.92116 0.89827 0.90863 0.88826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.39 10.42 36.00 0.38 -0.02 16 2 C -0.02 -0.14 7.32 -35.63 -0.26 -0.40 16 3 C -0.21 -1.87 10.81 -39.71 -0.43 -2.30 16 4 C -0.20 -1.86 10.81 -39.70 -0.43 -2.29 16 5 C -0.01 -0.08 6.58 -35.62 -0.23 -0.32 16 6 C -0.05 -0.39 5.86 -27.88 -0.16 -0.56 16 7 C 0.13 1.36 5.66 -4.05 -0.02 1.34 16 8 N -0.74 -8.72 5.55 -61.38 -0.34 -9.06 16 9 C 0.60 10.00 7.81 -12.52 -0.10 9.90 16 10 O -0.55 -10.71 14.84 5.27 0.08 -10.63 16 11 C -0.33 -6.05 6.13 -105.07 -0.64 -6.70 16 12 C 0.06 0.98 11.50 -16.98 -0.20 0.79 16 13 N -0.30 -6.31 12.50 30.86 0.39 -5.93 16 14 N -0.31 -7.09 3.56 -57.78 -0.21 -7.29 16 15 C 0.25 6.24 5.97 -5.19 -0.03 6.21 16 16 C -0.54 -14.56 9.39 -34.44 -0.32 -14.88 16 17 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 18 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 19 N -0.89 -24.59 13.29 55.43 0.74 -23.86 16 20 Si 0.91 20.86 29.54 -169.99 -5.02 15.84 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 C 0.17 3.39 7.01 -81.60 -0.57 2.81 16 25 C -0.09 -1.70 9.57 36.00 0.34 -1.35 16 26 O -0.17 -1.88 10.65 5.72 0.06 -1.81 16 27 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.15 0.97 8.06 -52.49 -0.42 0.54 16 31 H 0.15 1.11 8.06 -52.48 -0.42 0.68 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.40 3.57 7.43 -40.82 -0.30 3.26 16 37 H 0.18 2.07 7.50 -52.48 -0.39 1.68 16 38 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 39 H 0.06 1.40 7.02 -51.93 -0.36 1.03 16 40 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 41 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 42 H 0.07 1.30 7.05 -51.93 -0.37 0.93 16 43 H 0.09 1.64 6.50 -51.93 -0.34 1.30 16 LS Contribution 372.54 15.07 5.61 5.61 Total: -1.00 -32.81 372.54 -7.43 -40.25 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -5.96 Total: 2.94 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -2.78 Total: -6.06 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: 0.58 Total: -46.13 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: 0.14 Total: -12.45 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.81 -7.43 -40.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888175704.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.517 kcal (2) G-P(sol) polarization free energy of solvation -32.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds