Wall clock time and date at job start Tue Mar 31 2020 11:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34515 * 125.79319 * 2 1 4 4 C 1.41376 * 106.84242 * 179.73499 * 3 2 1 5 5 C 1.34516 * 106.84089 * 0.02562 * 4 3 2 6 6 C 1.50708 * 125.78754 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47007 * 89.99901 * 6 5 4 8 8 N 1.46493 * 109.47019 * 179.97438 * 7 6 5 9 9 C 1.34771 * 120.00145 * 180.02562 * 8 7 6 10 10 O 1.21609 * 119.99955 * 359.97438 * 9 8 7 11 11 C 1.47434 * 120.00185 * 179.97438 * 9 8 7 12 12 C 1.41285 * 126.41499 * 359.68702 * 11 9 8 13 13 N 1.30447 * 108.02311 * 179.87782 * 12 11 9 14 14 N 1.39932 * 108.89794 * 0.38397 * 13 12 11 15 15 C 1.46501 * 125.75637 * 179.77519 * 14 13 12 16 16 C 1.50698 * 109.46685 * 269.97364 * 15 14 13 17 17 H 1.08002 * 120.00491 * 0.02562 * 16 15 14 18 18 C 1.37877 * 119.99673 * 179.97438 * 16 15 14 19 19 N 1.31518 * 120.00116 * 0.02562 * 18 16 15 20 20 Si 1.86807 * 119.99982 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46876 * 89.99994 * 20 18 16 22 22 H 1.48500 * 109.47113 * 210.00179 * 20 18 16 23 23 H 1.48504 * 109.47004 * 330.00149 * 20 18 16 24 24 C 1.34264 * 108.49049 * 359.74919 * 14 13 12 25 25 C 1.50698 * 126.28896 * 179.97438 * 24 14 13 26 26 O 1.34298 * 108.42070 * 0.02562 * 5 4 3 27 27 H 1.09007 * 109.47122 * 90.00090 * 1 2 3 28 28 H 1.09004 * 109.47299 * 210.00077 * 1 2 3 29 29 H 1.09003 * 109.47154 * 330.00412 * 1 2 3 30 30 H 1.07995 * 126.57546 * 359.70154 * 3 2 1 31 31 H 1.08003 * 126.57866 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.46884 * 209.99804 * 6 5 4 33 33 H 1.09003 * 109.47129 * 329.99652 * 6 5 4 34 34 H 1.09003 * 109.46984 * 300.00168 * 7 6 5 35 35 H 1.08999 * 109.46938 * 60.00063 * 7 6 5 36 36 H 0.97007 * 120.00204 * 359.97438 * 8 7 6 37 37 H 1.08006 * 125.98950 * 359.97438 * 12 11 9 38 38 H 1.08998 * 109.47128 * 29.97226 * 15 14 13 39 39 H 1.08998 * 109.47082 * 149.97678 * 15 14 13 40 40 H 0.97006 * 119.99692 * 179.97438 * 19 18 16 41 41 H 1.09007 * 109.46729 * 269.99837 * 25 24 14 42 42 H 1.08997 * 109.47259 * 30.00149 * 25 24 14 43 43 H 1.08998 * 109.47107 * 150.00587 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6320 0.0063 5 6 3.5813 -0.7123 0.0091 6 6 4.7705 -1.6380 0.0164 7 6 5.1667 -1.9479 1.4614 8 7 6.3223 -2.8482 1.4685 9 6 6.8486 -3.2599 2.6389 10 8 6.3645 -2.8837 3.6891 11 6 8.0113 -4.1665 2.6460 12 6 8.6738 -4.6897 1.5131 13 7 9.6512 -5.4460 1.9307 14 7 9.6552 -5.4500 3.3300 15 6 10.5951 -6.1836 4.1813 16 6 10.0433 -7.5552 4.4729 17 1 9.0882 -7.8511 4.0647 18 6 10.7582 -8.4328 5.2602 19 7 11.9215 -8.0726 5.7570 20 14 10.0745 -10.1334 5.6212 21 1 10.5349 -11.0837 4.5771 22 1 10.5548 -10.5879 6.9508 23 1 8.5904 -10.0802 5.6225 24 6 8.6527 -4.6677 3.7609 25 6 8.2933 -4.3888 5.1976 26 8 2.2923 -1.0895 0.0044 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 1.9666 2.1203 -0.0045 31 1 4.5212 1.2433 0.0076 32 1 4.5127 -2.5646 -0.4964 33 1 5.6061 -1.1601 -0.4949 34 1 5.4244 -1.0212 1.9742 35 1 4.3311 -2.4258 1.9727 36 1 6.7082 -3.1487 0.6308 37 1 8.4172 -4.4960 0.4821 38 1 11.5521 -6.2785 3.6682 39 1 10.7365 -5.6423 5.1168 40 1 12.4242 -8.6900 6.3111 41 1 7.5741 -5.1316 5.5430 42 1 9.1914 -4.4389 5.8131 43 1 7.8542 -3.3943 5.2758 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888175704.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:52 Heat of formation + Delta-G solvation = 11.519421 kcal Electronic energy + Delta-G solvation = -24888.161722 eV Core-core repulsion = 21128.201178 eV Total energy + Delta-G solvation = -3759.960544 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.52452 -42.29601 -40.13195 -36.60606 -35.80556 -34.13857 -34.01419 -33.52140 -32.72382 -31.20696 -29.20107 -28.26048 -26.75244 -25.34447 -24.04943 -23.08677 -22.65720 -21.36662 -21.01967 -20.48430 -18.86529 -18.48938 -17.56021 -17.19458 -16.81104 -16.63582 -16.57205 -16.21328 -15.92052 -15.36992 -15.12987 -14.86471 -14.57449 -14.23944 -14.07204 -13.93077 -13.79325 -13.71828 -13.69187 -13.58222 -13.37718 -13.09963 -12.99533 -12.95557 -12.73666 -12.70522 -12.31310 -12.23571 -11.85544 -11.72183 -10.85321 -10.78836 -10.76241 -10.25722 -10.12521 -9.42851 -9.19672 -8.38007 -6.54240 0.68668 0.73369 1.33962 1.37141 1.39255 1.48698 1.62710 1.69870 1.95228 2.31964 2.45109 2.55827 2.94149 3.70664 3.75505 3.82243 3.95755 3.98531 4.14256 4.16193 4.16879 4.25401 4.50403 4.54567 4.56761 4.63527 4.72211 4.78677 4.80622 4.87912 4.90178 4.95085 5.00782 5.08735 5.14807 5.18571 5.33035 5.48118 5.50493 5.66631 5.69873 5.74895 6.04801 6.24959 6.54712 6.63906 6.86587 7.16731 7.37001 8.69791 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.028364 B = 0.002055 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.926052 B =13620.592389 C =13879.347397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.029 4.029 3 C -0.227 4.227 4 C -0.210 4.210 5 C -0.028 4.028 6 C -0.038 4.038 7 C 0.132 3.868 8 N -0.713 5.713 9 C 0.605 3.395 10 O -0.586 6.586 11 C -0.331 4.331 12 C 0.081 3.919 13 N -0.337 5.337 14 N -0.338 5.338 15 C 0.266 3.734 16 C -0.555 4.555 17 H 0.051 0.949 18 C 0.023 3.977 19 N -0.916 5.916 20 Si 0.971 3.029 21 H -0.272 1.272 22 H -0.272 1.272 23 H -0.270 1.270 24 C 0.144 3.856 25 C -0.086 4.086 26 O -0.195 6.195 27 H 0.094 0.906 28 H 0.077 0.923 29 H 0.105 0.895 30 H 0.165 0.835 31 H 0.163 0.837 32 H 0.101 0.899 33 H 0.127 0.873 34 H 0.064 0.936 35 H 0.050 0.950 36 H 0.416 0.584 37 H 0.231 0.769 38 H 0.032 0.968 39 H 0.050 0.950 40 H 0.274 0.726 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.646 16.972 -13.387 28.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.079 4.079 3 C -0.246 4.246 4 C -0.229 4.229 5 C -0.078 4.078 6 C -0.076 4.076 7 C 0.009 3.991 8 N -0.365 5.365 9 C 0.394 3.606 10 O -0.468 6.468 11 C -0.346 4.346 12 C -0.105 4.105 13 N -0.156 5.156 14 N -0.115 5.115 15 C 0.148 3.852 16 C -0.593 4.593 17 H 0.070 0.930 18 C -0.178 4.178 19 N -0.554 5.554 20 Si 0.795 3.205 21 H -0.197 1.197 22 H -0.196 1.196 23 H -0.195 1.195 24 C 0.008 3.992 25 C -0.144 4.144 26 O -0.093 6.093 27 H 0.112 0.888 28 H 0.096 0.904 29 H 0.124 0.876 30 H 0.183 0.817 31 H 0.181 0.819 32 H 0.119 0.881 33 H 0.145 0.855 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.254 0.746 37 H 0.247 0.753 38 H 0.050 0.950 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.100 0.900 42 H 0.089 0.911 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -17.827 16.043 -12.824 27.196 hybrid contribution -0.230 -0.441 0.305 0.584 sum -18.057 15.602 -12.519 26.948 Atomic orbital electron populations 1.20473 0.82955 1.05008 1.04602 1.23176 0.95503 0.83913 1.05285 1.21917 0.92753 1.00363 1.09539 1.21938 0.99158 0.94023 1.07760 1.22394 0.83031 0.94941 1.07461 1.20256 0.92141 0.99240 0.95923 1.21190 0.87558 0.93458 0.96928 1.45433 1.32925 1.49890 1.08292 1.17140 0.81259 0.78556 0.83649 1.90691 1.63479 1.59648 1.32946 1.19927 1.06821 1.15271 0.92572 1.24557 0.91872 0.93566 1.00544 1.77092 1.24495 1.24285 0.89745 1.49094 1.23927 1.33756 1.04746 1.19370 0.87053 0.90911 0.87896 1.21389 1.06076 0.98941 1.32896 0.93030 1.25733 0.94842 1.02723 0.94529 1.69998 1.13618 1.38089 1.33707 0.85349 0.78644 0.78442 0.78042 1.19750 1.19632 1.19497 1.21966 0.88582 0.90575 0.98105 1.20542 1.02193 1.04146 0.87547 1.83955 1.17073 1.36217 1.72011 0.88784 0.90448 0.87611 0.81735 0.81890 0.88090 0.85488 0.91781 0.93121 0.74631 0.75294 0.94973 0.93192 0.91667 0.90037 0.91054 0.88072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.67 10.42 71.23 0.74 0.07 16 2 C -0.03 -0.49 7.32 24.83 0.18 -0.31 16 3 C -0.23 -3.66 10.81 22.19 0.24 -3.42 16 4 C -0.21 -3.52 10.81 22.19 0.24 -3.28 16 5 C -0.03 -0.51 6.58 24.84 0.16 -0.34 16 6 C -0.04 -0.49 5.86 29.85 0.18 -0.32 16 7 C 0.13 2.55 5.66 86.38 0.49 3.04 16 8 N -0.71 -14.93 5.55 -466.38 -2.59 -17.52 16 9 C 0.60 19.02 7.81 86.67 0.68 19.70 16 10 O -0.59 -22.25 14.84 -4.06 -0.06 -22.31 16 11 C -0.33 -11.58 6.13 -20.15 -0.12 -11.70 16 12 C 0.08 2.59 11.50 85.65 0.99 3.58 16 13 N -0.34 -14.23 12.50 -56.27 -0.70 -14.93 16 14 N -0.34 -15.58 3.56 -336.70 -1.20 -16.78 16 15 C 0.27 13.78 5.97 85.63 0.51 14.29 16 16 C -0.55 -30.65 9.39 25.60 0.24 -30.41 16 17 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 18 C 0.02 1.25 5.46 84.65 0.46 1.71 16 19 N -0.92 -51.33 13.29 21.45 0.28 -51.04 16 20 Si 0.97 42.79 29.54 68.60 2.03 44.82 16 21 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 22 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 23 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 24 C 0.14 5.91 7.01 42.14 0.30 6.20 16 25 C -0.09 -3.22 9.57 71.24 0.68 -2.54 16 26 O -0.19 -4.05 10.65 -2.45 -0.03 -4.07 16 27 H 0.09 0.59 8.14 -2.38 -0.02 0.57 16 28 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 31 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 32 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.42 5.75 7.43 -92.70 -0.69 5.06 16 37 H 0.23 4.36 7.50 -2.91 -0.02 4.34 16 38 H 0.03 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.05 2.59 7.02 -2.39 -0.02 2.58 16 40 H 0.27 14.35 8.31 -92.70 -0.77 13.58 16 41 H 0.08 3.03 8.14 -2.38 -0.02 3.01 16 42 H 0.07 2.63 7.05 -2.39 -0.02 2.61 16 43 H 0.10 3.58 6.50 -2.39 -0.02 3.56 16 Total: -1.00 -72.74 372.54 4.04 -68.70 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 0.35 Total: 16.86 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: 5.96 Total: -3.72 kcal Atomic # 7 Polarization: -96.06 SS G_CDS: -4.20 Total: -100.27 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.09 Total: -26.38 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -72.74 4.04 -68.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888175704.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.215 kcal (2) G-P(sol) polarization free energy of solvation -72.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds