Wall clock time and date at job start Tue Mar 31 2020 12:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38047 * 126.29480 * 2 1 4 4 C 1.47430 * 126.41106 * 0.02562 * 3 2 1 5 5 O 1.21603 * 120.00081 * 359.71551 * 4 3 2 6 6 N 1.34777 * 119.99963 * 179.71630 * 4 3 2 7 7 C 1.46498 * 119.99828 * 180.27989 * 6 4 3 8 8 H 1.08998 * 110.66712 * 34.01809 * 7 6 4 9 9 C 1.55003 * 110.74706 * 270.80321 * 7 6 4 10 10 C 1.55817 * 102.78794 * 241.67387 * 9 7 6 11 11 H 1.09001 * 115.38619 * 158.10909 * 10 9 7 12 12 O 1.46542 * 101.24301 * 32.42272 * 10 9 7 13 13 C 1.47036 * 99.71286 * 305.81293 * 12 10 9 14 14 H 1.08991 * 115.88226 * 179.59803 * 13 12 10 15 15 C 1.55817 * 101.23413 * 305.89410 * 13 12 10 16 16 H 1.08998 * 118.19744 * 171.44568 * 15 13 12 17 17 C 1.53002 * 117.24365 * 328.14801 * 15 13 12 18 18 C 1.55817 * 105.33144 * 286.58634 * 10 9 7 19 19 H 1.08997 * 118.19500 * 293.41589 * 18 10 9 20 20 C 1.41285 * 107.17180 * 179.76409 * 3 2 1 21 21 N 1.30451 * 108.02593 * 0.24208 * 20 3 2 22 22 N 1.34261 * 126.29419 * 180.18582 * 2 1 3 23 23 C 1.46507 * 125.75001 * 359.97438 * 22 2 1 24 24 C 1.50702 * 109.47184 * 270.26792 * 23 22 2 25 25 H 1.08006 * 119.99879 * 0.02562 * 24 23 22 26 26 C 1.37870 * 119.99979 * 180.02562 * 24 23 22 27 27 N 1.31519 * 120.00270 * 0.02562 * 26 24 23 28 28 Si 1.86801 * 120.00110 * 180.02562 * 26 24 23 29 29 H 1.48497 * 109.46818 * 359.97438 * 28 26 24 30 30 H 1.48497 * 109.47217 * 120.00218 * 28 26 24 31 31 H 1.48499 * 109.47134 * 240.00149 * 28 26 24 32 32 H 1.08995 * 109.47501 * 90.02273 * 1 2 3 33 33 H 1.09003 * 109.47300 * 210.02789 * 1 2 3 34 34 H 1.09004 * 109.47176 * 330.02292 * 1 2 3 35 35 H 0.97001 * 119.99727 * 359.97438 * 6 4 3 36 36 H 1.08996 * 110.74617 * 0.02562 * 9 7 6 37 37 H 1.09003 * 110.74599 * 123.16863 * 9 7 6 38 38 H 1.08995 * 117.41143 * 196.95259 * 17 15 13 39 39 H 1.09003 * 117.40747 * 341.56057 * 17 15 13 40 40 H 1.08002 * 125.98809 * 180.20353 * 20 3 2 41 41 H 1.09000 * 109.46878 * 30.27165 * 23 22 2 42 42 H 1.08998 * 109.47000 * 150.27215 * 23 22 2 43 43 H 0.96996 * 120.00112 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5203 0.0005 5 8 0.6996 2.7878 -0.0042 6 7 2.7999 3.5107 0.0062 7 6 2.3644 4.9094 0.0130 8 1 1.4425 5.0225 0.5834 9 6 2.1828 5.4349 -1.4339 10 6 3.2222 6.5931 -1.5131 11 1 3.5405 6.8673 -2.5189 12 8 4.2768 6.0916 -0.6278 13 6 3.4827 5.8331 0.5823 14 1 4.0311 5.4321 1.4346 15 6 2.8020 7.2177 0.8003 16 1 2.0263 7.2960 1.5620 17 6 3.5853 8.4589 0.3683 18 6 2.6142 7.7509 -0.6659 19 1 1.7045 8.2305 -1.0269 20 6 3.6590 0.6498 0.0056 21 7 3.6340 -0.6545 0.0034 22 7 2.3017 -1.0821 -0.0035 23 6 1.8500 -2.4758 -0.0075 24 6 1.6893 -2.9559 1.4119 25 1 1.9019 -2.2894 2.2348 26 6 1.2709 -4.2459 1.6602 27 7 1.0125 -5.0577 0.6582 28 14 1.0711 -4.8408 3.4196 29 1 1.4228 -3.7433 4.3561 30 1 -0.3375 -5.2529 3.6458 31 1 1.9697 -5.9993 3.6555 32 1 -0.3634 -0.0004 -1.0276 33 1 -0.3634 -0.8897 0.5143 34 1 -0.3634 0.8902 0.5135 35 1 3.7461 3.2973 0.0104 36 1 2.4160 4.6559 -2.1597 37 1 1.1704 5.8099 -1.5844 38 1 3.2591 9.4209 0.7637 39 1 4.6607 8.3498 0.2274 40 1 4.5448 1.2676 0.0101 41 1 0.8935 -2.5463 -0.5254 42 1 2.5868 -3.0950 -0.5192 43 1 0.7178 -5.9652 0.8329 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888851512.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:12 Heat of formation + Delta-G solvation = 39.395726 kcal Electronic energy + Delta-G solvation = -26129.052139 eV Core-core repulsion = 22370.300402 eV Total energy + Delta-G solvation = -3758.751737 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.57461 -40.72370 -38.58864 -34.84938 -33.98148 -33.78687 -32.10414 -31.32493 -30.73529 -29.27204 -27.24260 -26.59649 -24.15855 -23.49168 -22.56222 -21.30256 -20.86570 -20.29376 -19.71727 -18.98335 -17.32966 -17.21439 -16.78569 -16.04258 -16.00554 -15.07275 -14.84084 -14.54540 -14.46111 -14.14419 -14.04561 -13.57508 -13.18418 -12.82167 -12.71842 -12.57629 -12.50811 -12.29244 -12.05744 -11.80534 -11.70909 -11.62545 -11.48021 -11.38475 -11.10720 -10.92340 -10.51210 -10.37821 -10.33306 -10.16642 -9.94765 -9.91807 -9.39852 -8.98015 -8.72458 -8.58146 -7.91875 -6.34466 -4.42418 2.17843 2.79528 2.98502 3.16414 3.16816 3.24539 3.29323 3.39720 3.65292 3.88342 4.12268 4.19791 4.23737 4.32102 4.52336 4.64785 4.75232 4.84780 4.99491 5.08135 5.13127 5.26010 5.27490 5.38094 5.41228 5.49535 5.53164 5.59564 5.74553 5.78676 5.82604 5.90798 5.96800 6.09154 6.17136 6.46292 6.58717 6.64600 6.78834 6.89734 7.16528 7.55821 7.73519 7.76526 7.79351 8.38079 8.59585 8.64210 9.24741 10.73729 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.030817 B = 0.002531 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.362084 B =11061.982068 C =11105.584802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.166 3.834 3 C -0.333 4.333 4 C 0.606 3.394 5 O -0.556 6.556 6 N -0.725 5.725 7 C 0.130 3.870 8 H 0.102 0.898 9 C -0.153 4.153 10 C 0.091 3.909 11 H 0.131 0.869 12 O -0.370 6.370 13 C 0.084 3.916 14 H 0.137 0.863 15 C -0.190 4.190 16 H 0.123 0.877 17 C -0.129 4.129 18 C -0.203 4.203 19 H 0.128 0.872 20 C 0.058 3.942 21 N -0.295 5.295 22 N -0.314 5.314 23 C 0.251 3.749 24 C -0.540 4.540 25 H 0.066 0.934 26 C 0.067 3.933 27 N -0.889 5.889 28 Si 0.908 3.092 29 H -0.271 1.271 30 H -0.280 1.280 31 H -0.280 1.280 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.401 0.599 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.176 0.824 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.831 23.879 -2.734 24.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.029 3.971 3 C -0.349 4.349 4 C 0.396 3.604 5 O -0.435 6.435 6 N -0.376 5.376 7 C 0.024 3.976 8 H 0.120 0.880 9 C -0.192 4.192 10 C 0.033 3.967 11 H 0.148 0.852 12 O -0.289 6.289 13 C 0.026 3.974 14 H 0.155 0.845 15 C -0.208 4.208 16 H 0.140 0.860 17 C -0.166 4.166 18 C -0.221 4.221 19 H 0.146 0.854 20 C -0.129 4.129 21 N -0.115 5.115 22 N -0.091 5.091 23 C 0.133 3.867 24 C -0.578 4.578 25 H 0.084 0.916 26 C -0.137 4.137 27 N -0.527 5.527 28 Si 0.735 3.265 29 H -0.195 1.195 30 H -0.205 1.205 31 H -0.206 1.206 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.114 0.886 35 H 0.235 0.765 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.192 0.808 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.845 22.538 -2.840 22.894 hybrid contribution -0.302 0.165 0.964 1.024 sum 2.544 22.703 -1.876 22.922 Atomic orbital electron populations 1.20609 0.86866 1.04827 1.03250 1.21473 0.94948 0.86510 0.94195 1.19662 0.93169 0.92439 1.29618 1.17331 0.84980 0.83905 0.74135 1.90684 1.16703 1.84443 1.51716 1.45664 1.09960 1.04608 1.77414 1.22371 0.98126 0.81024 0.96081 0.88016 1.23629 0.99833 0.98029 0.97723 1.24211 0.86466 0.91264 0.94750 0.85184 1.90186 1.30098 1.84668 1.23907 1.24564 0.90532 0.92788 0.89554 0.84533 1.24544 1.04137 0.93364 0.98791 0.85950 1.23636 0.98381 0.94887 0.99702 1.25593 1.02863 1.01970 0.91641 0.85433 1.23734 0.96362 0.92616 1.00182 1.77142 0.98621 1.12278 1.23487 1.49384 1.02491 1.08302 1.48923 1.19860 0.96422 0.70937 0.99448 1.21297 1.47351 0.98138 0.91046 0.91593 1.24931 0.94465 0.96001 0.98301 1.69924 1.44577 1.07176 1.31000 0.86269 0.77967 0.78862 0.83435 1.19510 1.20540 1.20561 0.90544 0.89900 0.88649 0.76478 0.89822 0.89847 0.88094 0.88051 0.80754 0.92557 0.92480 0.92154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.76 9.34 36.00 0.34 -1.43 16 2 C 0.17 3.39 7.01 -81.60 -0.57 2.82 16 3 C -0.33 -6.10 6.13 -105.07 -0.64 -6.74 16 4 C 0.61 9.94 7.81 -12.52 -0.10 9.84 16 5 O -0.56 -10.37 14.52 5.27 0.08 -10.30 16 6 N -0.73 -8.99 5.09 -52.40 -0.27 -9.25 16 7 C 0.13 1.39 2.82 -65.37 -0.18 1.20 16 8 H 0.10 1.21 7.51 -51.93 -0.39 0.82 16 9 C -0.15 -1.50 6.30 -24.17 -0.15 -1.65 16 10 C 0.09 0.77 5.62 -23.72 -0.13 0.63 16 11 H 0.13 0.90 8.14 -51.93 -0.42 0.48 16 12 O -0.37 -3.79 10.84 -35.23 -0.38 -4.18 16 13 C 0.08 0.75 5.25 -23.72 -0.12 0.62 16 14 H 0.14 1.08 8.14 -51.93 -0.42 0.66 16 15 C -0.19 -1.46 6.51 -86.87 -0.57 -2.03 16 16 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 17 C -0.13 -0.90 9.97 -23.66 -0.24 -1.14 16 18 C -0.20 -1.49 7.00 -83.80 -0.59 -2.08 16 19 H 0.13 0.79 8.14 -51.93 -0.42 0.37 16 20 C 0.06 1.02 11.50 -16.98 -0.20 0.82 16 21 N -0.30 -6.39 12.50 30.86 0.39 -6.01 16 22 N -0.31 -7.13 3.56 -57.77 -0.21 -7.34 16 23 C 0.25 6.25 5.78 -5.19 -0.03 6.22 16 24 C -0.54 -14.54 9.39 -34.44 -0.32 -14.86 16 25 H 0.07 1.83 7.81 -52.48 -0.41 1.42 16 26 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 27 N -0.89 -24.58 13.29 55.43 0.74 -23.84 16 28 Si 0.91 20.79 29.54 -169.99 -5.02 15.77 16 29 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 30 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 31 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 32 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.08 1.55 7.71 -51.93 -0.40 1.15 16 34 H 0.09 1.69 6.50 -51.93 -0.34 1.35 16 35 H 0.40 4.29 7.60 -40.82 -0.31 3.98 16 36 H 0.08 0.92 7.99 -51.93 -0.41 0.51 16 37 H 0.08 0.78 8.03 -51.93 -0.42 0.36 16 38 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.10 0.78 7.73 -51.93 -0.40 0.38 16 40 H 0.18 2.24 7.50 -52.49 -0.39 1.84 16 41 H 0.06 1.39 7.64 -51.93 -0.40 1.00 16 42 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 43 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 357.87 15.07 5.39 5.39 Total: -1.00 -31.16 357.87 -8.85 -40.01 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -5.97 Total: 5.80 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: -3.61 Total: -6.07 kcal Atomic # 7 Polarization: -47.08 SS G_CDS: 0.65 Total: -46.44 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: -0.31 Total: -14.47 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.16 -8.85 -40.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888851512.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.410 kcal (2) G-P(sol) polarization free energy of solvation -31.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds