Wall clock time and date at job start Tue Mar 31 2020 12:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38047 * 126.29480 * 2 1 4 4 C 1.47430 * 126.41106 * 0.02562 * 3 2 1 5 5 O 1.21603 * 120.00081 * 359.71551 * 4 3 2 6 6 N 1.34777 * 119.99963 * 179.71630 * 4 3 2 7 7 C 1.46498 * 119.99828 * 180.27989 * 6 4 3 8 8 H 1.08998 * 110.66712 * 34.01809 * 7 6 4 9 9 C 1.55003 * 110.74706 * 270.80321 * 7 6 4 10 10 C 1.55817 * 102.78794 * 241.67387 * 9 7 6 11 11 H 1.09001 * 115.38619 * 158.10909 * 10 9 7 12 12 O 1.46542 * 101.24301 * 32.42272 * 10 9 7 13 13 C 1.47036 * 99.71286 * 305.81293 * 12 10 9 14 14 H 1.08991 * 115.88226 * 179.59803 * 13 12 10 15 15 C 1.55817 * 101.23413 * 305.89410 * 13 12 10 16 16 H 1.08998 * 118.19744 * 171.44568 * 15 13 12 17 17 C 1.53002 * 117.24365 * 328.14801 * 15 13 12 18 18 C 1.55817 * 105.33144 * 286.58634 * 10 9 7 19 19 H 1.08997 * 118.19500 * 293.41589 * 18 10 9 20 20 C 1.41285 * 107.17180 * 179.76409 * 3 2 1 21 21 N 1.30451 * 108.02593 * 0.24208 * 20 3 2 22 22 N 1.34261 * 126.29419 * 180.18582 * 2 1 3 23 23 C 1.46507 * 125.75001 * 359.97438 * 22 2 1 24 24 C 1.50702 * 109.47184 * 270.26792 * 23 22 2 25 25 H 1.08006 * 119.99879 * 0.02562 * 24 23 22 26 26 C 1.37870 * 119.99979 * 180.02562 * 24 23 22 27 27 N 1.31519 * 120.00270 * 0.02562 * 26 24 23 28 28 Si 1.86801 * 120.00110 * 180.02562 * 26 24 23 29 29 H 1.48497 * 109.46818 * 359.97438 * 28 26 24 30 30 H 1.48497 * 109.47217 * 120.00218 * 28 26 24 31 31 H 1.48499 * 109.47134 * 240.00149 * 28 26 24 32 32 H 1.08995 * 109.47501 * 90.02273 * 1 2 3 33 33 H 1.09003 * 109.47300 * 210.02789 * 1 2 3 34 34 H 1.09004 * 109.47176 * 330.02292 * 1 2 3 35 35 H 0.97001 * 119.99727 * 359.97438 * 6 4 3 36 36 H 1.08996 * 110.74617 * 0.02562 * 9 7 6 37 37 H 1.09003 * 110.74599 * 123.16863 * 9 7 6 38 38 H 1.08995 * 117.41143 * 196.95259 * 17 15 13 39 39 H 1.09003 * 117.40747 * 341.56057 * 17 15 13 40 40 H 1.08002 * 125.98809 * 180.20353 * 20 3 2 41 41 H 1.09000 * 109.46878 * 30.27165 * 23 22 2 42 42 H 1.08998 * 109.47000 * 150.27215 * 23 22 2 43 43 H 0.96996 * 120.00112 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5203 0.0005 5 8 0.6996 2.7878 -0.0042 6 7 2.7999 3.5107 0.0062 7 6 2.3644 4.9094 0.0130 8 1 1.4425 5.0225 0.5834 9 6 2.1828 5.4349 -1.4339 10 6 3.2222 6.5931 -1.5131 11 1 3.5405 6.8673 -2.5189 12 8 4.2768 6.0916 -0.6278 13 6 3.4827 5.8331 0.5823 14 1 4.0311 5.4321 1.4346 15 6 2.8020 7.2177 0.8003 16 1 2.0263 7.2960 1.5620 17 6 3.5853 8.4589 0.3683 18 6 2.6142 7.7509 -0.6659 19 1 1.7045 8.2305 -1.0269 20 6 3.6590 0.6498 0.0056 21 7 3.6340 -0.6545 0.0034 22 7 2.3017 -1.0821 -0.0035 23 6 1.8500 -2.4758 -0.0075 24 6 1.6893 -2.9559 1.4119 25 1 1.9019 -2.2894 2.2348 26 6 1.2709 -4.2459 1.6602 27 7 1.0125 -5.0577 0.6582 28 14 1.0711 -4.8408 3.4196 29 1 1.4228 -3.7433 4.3561 30 1 -0.3375 -5.2529 3.6458 31 1 1.9697 -5.9993 3.6555 32 1 -0.3634 -0.0004 -1.0276 33 1 -0.3634 -0.8897 0.5143 34 1 -0.3634 0.8902 0.5135 35 1 3.7461 3.2973 0.0104 36 1 2.4160 4.6559 -2.1597 37 1 1.1704 5.8099 -1.5844 38 1 3.2591 9.4209 0.7637 39 1 4.6607 8.3498 0.2274 40 1 4.5448 1.2676 0.0101 41 1 0.8935 -2.5463 -0.5254 42 1 2.5868 -3.0950 -0.5192 43 1 0.7178 -5.9652 0.8329 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888851512.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:11 Heat of formation + Delta-G solvation = 19.347119 kcal Electronic energy + Delta-G solvation = -26129.921512 eV Core-core repulsion = 22370.300402 eV Total energy + Delta-G solvation = -3759.621109 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.44149 -42.11962 -39.87050 -35.90268 -35.73300 -34.65598 -33.82580 -32.80233 -31.74595 -30.16823 -28.96518 -28.09356 -25.46753 -24.72541 -23.79424 -22.39004 -21.59069 -21.03055 -20.94709 -20.43967 -18.88080 -18.53595 -17.95686 -17.13108 -17.01595 -16.59325 -16.33919 -16.07753 -15.56135 -15.29671 -15.19618 -14.83267 -14.36949 -14.28175 -14.06001 -13.68070 -13.60920 -13.54663 -13.35980 -13.16348 -13.08324 -12.95907 -12.73120 -12.38497 -12.34281 -12.30336 -12.13090 -11.84303 -11.73644 -11.21491 -11.00720 -10.77661 -10.76318 -10.52936 -10.27058 -10.07233 -9.45246 -8.38961 -6.55513 0.67140 1.31414 1.35796 1.38314 1.49281 1.64639 2.20364 2.32079 2.51829 2.56304 2.81631 2.93154 3.45936 3.57556 3.62134 3.74214 3.78074 3.89340 3.90811 4.09122 4.15308 4.17685 4.24191 4.37024 4.53605 4.65059 4.66053 4.67781 4.78730 4.79757 4.89400 4.90642 4.97234 5.02301 5.04070 5.12044 5.17501 5.33574 5.45397 5.48294 5.59696 5.68054 5.73690 6.03947 6.54018 6.60692 6.83883 7.15855 7.34617 8.69161 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.030817 B = 0.002531 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.362084 B =11061.982068 C =11105.584802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.146 3.854 3 C -0.331 4.331 4 C 0.608 3.392 5 O -0.580 6.580 6 N -0.707 5.707 7 C 0.125 3.875 8 H 0.091 0.909 9 C -0.151 4.151 10 C 0.091 3.909 11 H 0.145 0.855 12 O -0.386 6.386 13 C 0.087 3.913 14 H 0.147 0.853 15 C -0.197 4.197 16 H 0.131 0.869 17 C -0.121 4.121 18 C -0.203 4.203 19 H 0.141 0.859 20 C 0.079 3.921 21 N -0.337 5.337 22 N -0.339 5.339 23 C 0.267 3.733 24 C -0.555 4.555 25 H 0.051 0.949 26 C 0.023 3.977 27 N -0.917 5.917 28 Si 0.972 3.028 29 H -0.272 1.272 30 H -0.268 1.268 31 H -0.273 1.273 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.411 0.589 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.119 0.881 39 H 0.094 0.906 40 H 0.224 0.776 41 H 0.051 0.949 42 H 0.031 0.969 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.313 26.129 -2.013 26.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.010 3.990 3 C -0.347 4.347 4 C 0.398 3.602 5 O -0.462 6.462 6 N -0.358 5.358 7 C 0.020 3.980 8 H 0.109 0.891 9 C -0.190 4.190 10 C 0.034 3.966 11 H 0.163 0.837 12 O -0.305 6.305 13 C 0.029 3.971 14 H 0.165 0.835 15 C -0.215 4.215 16 H 0.149 0.851 17 C -0.158 4.158 18 C -0.221 4.221 19 H 0.159 0.841 20 C -0.108 4.108 21 N -0.156 5.156 22 N -0.116 5.116 23 C 0.148 3.852 24 C -0.593 4.593 25 H 0.070 0.930 26 C -0.178 4.178 27 N -0.555 5.555 28 Si 0.796 3.204 29 H -0.197 1.197 30 H -0.193 1.193 31 H -0.199 1.199 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.118 0.882 35 H 0.247 0.753 36 H 0.088 0.912 37 H 0.106 0.894 38 H 0.137 0.863 39 H 0.112 0.888 40 H 0.240 0.760 41 H 0.068 0.932 42 H 0.049 0.951 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.353 24.827 -2.129 25.143 hybrid contribution -0.405 -0.397 0.684 0.889 sum 2.948 24.431 -1.445 24.650 Atomic orbital electron populations 1.20581 0.85839 1.04278 1.04045 1.21978 0.95965 0.86677 0.94336 1.19955 0.93238 0.93091 1.28387 1.17102 0.85066 0.83747 0.74311 1.90673 1.17807 1.84645 1.53045 1.45519 1.09891 1.04782 1.75609 1.22524 0.98536 0.80017 0.96912 0.89072 1.23577 1.00637 0.98279 0.96533 1.24346 0.85649 0.91100 0.95534 0.83742 1.90175 1.30903 1.84861 1.24545 1.24613 0.89879 0.93103 0.89474 0.83518 1.24581 1.04630 0.92904 0.99405 0.85134 1.23701 0.97886 0.95251 0.98969 1.25673 1.03472 1.01814 0.91094 0.84090 1.24476 0.97670 0.91604 0.97040 1.77095 0.98381 1.14411 1.25731 1.49125 1.03367 1.07780 1.51295 1.19374 0.95266 0.72350 0.98176 1.21421 1.47889 0.98476 0.91535 0.93038 1.25739 0.93830 0.95937 1.02296 1.70003 1.44894 1.07636 1.32931 0.85287 0.78470 0.78185 0.78439 1.19698 1.19297 1.19854 0.89099 0.91166 0.88209 0.75263 0.91173 0.89448 0.86300 0.88785 0.76009 0.93159 0.95052 0.91636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.29 9.34 71.23 0.67 -2.62 16 2 C 0.15 6.04 7.01 42.14 0.30 6.34 16 3 C -0.33 -11.86 6.13 -20.15 -0.12 -11.98 16 4 C 0.61 19.22 7.81 86.66 0.68 19.90 16 5 O -0.58 -21.21 14.52 -4.04 -0.06 -21.27 16 6 N -0.71 -16.22 5.09 -437.96 -2.23 -18.45 16 7 C 0.13 2.46 2.82 46.65 0.13 2.60 16 8 H 0.09 2.04 7.51 -2.39 -0.02 2.02 16 9 C -0.15 -2.72 6.30 32.25 0.20 -2.52 16 10 C 0.09 1.34 5.62 32.54 0.18 1.52 16 11 H 0.15 1.67 8.14 -2.39 -0.02 1.65 16 12 O -0.39 -7.05 10.84 -148.98 -1.61 -8.67 16 13 C 0.09 1.37 5.25 32.54 0.17 1.54 16 14 H 0.15 1.96 8.14 -2.39 -0.02 1.94 16 15 C -0.20 -2.55 6.51 -8.36 -0.05 -2.60 16 16 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 17 C -0.12 -1.36 9.97 32.58 0.32 -1.03 16 18 C -0.20 -2.45 7.00 -6.37 -0.04 -2.50 16 19 H 0.14 1.33 8.14 -2.39 -0.02 1.31 16 20 C 0.08 2.66 11.50 85.65 0.99 3.64 16 21 N -0.34 -14.63 12.50 -56.28 -0.70 -15.33 16 22 N -0.34 -15.77 3.56 -336.69 -1.20 -16.97 16 23 C 0.27 13.88 5.78 85.63 0.50 14.38 16 24 C -0.56 -30.72 9.39 25.60 0.24 -30.48 16 25 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 26 C 0.02 1.26 5.46 84.65 0.46 1.73 16 27 N -0.92 -51.38 13.29 21.45 0.28 -51.10 16 28 Si 0.97 42.74 29.54 68.60 2.03 44.76 16 29 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 30 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 31 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 32 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 33 H 0.07 2.73 7.71 -2.39 -0.02 2.71 16 34 H 0.10 3.56 6.50 -2.38 -0.02 3.54 16 35 H 0.41 7.74 7.60 -92.71 -0.70 7.03 16 36 H 0.07 1.46 7.99 -2.39 -0.02 1.44 16 37 H 0.09 1.50 8.03 -2.39 -0.02 1.48 16 38 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.09 1.22 7.73 -2.39 -0.02 1.20 16 40 H 0.22 4.96 7.50 -2.91 -0.02 4.94 16 41 H 0.05 2.62 7.64 -2.39 -0.02 2.60 16 42 H 0.03 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -67.88 357.87 1.45 -66.43 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: 0.34 Total: 22.69 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: 4.61 Total: -2.10 kcal Atomic # 7 Polarization: -98.00 SS G_CDS: -3.85 Total: -101.85 kcal Atomic # 8 Polarization: -28.27 SS G_CDS: -1.67 Total: -29.94 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.76 kcal Total: -67.88 1.45 -66.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888851512.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.778 kcal (2) G-P(sol) polarization free energy of solvation -67.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds