Wall clock time and date at job start Tue Mar 31 2020 11:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 115.55340 * 2 1 4 4 C 1.53080 * 117.49247 * 214.26690 * 2 1 3 5 5 C 1.53005 * 59.98446 * 252.51807 * 4 2 1 6 6 H 1.08997 * 117.49656 * 107.50638 * 5 4 2 7 7 C 1.53007 * 117.49511 * 252.49956 * 5 4 2 8 8 N 1.46501 * 109.46736 * 243.74593 * 7 5 4 9 9 C 1.34779 * 119.99593 * 180.02562 * 8 7 5 10 10 O 1.21348 * 120.00271 * 359.97438 * 9 8 7 11 11 C 1.49375 * 119.99610 * 180.02562 * 9 8 7 12 12 O 1.21352 * 119.99707 * 359.97438 * 11 9 8 13 13 N 1.34779 * 119.99610 * 179.97438 * 11 9 8 14 14 C 1.39111 * 119.99442 * 174.84847 * 13 11 9 15 15 C 1.39716 * 119.57282 * 185.31106 * 14 13 11 16 16 C 1.38650 * 119.48903 * 179.97438 * 15 14 13 17 17 C 1.38345 * 118.67399 * 0.02562 * 16 15 14 18 18 C 1.40593 * 119.13808 * 359.97438 * 17 16 15 19 19 C 1.41335 * 119.78726 * 180.02562 * 18 17 16 20 20 H 1.07995 * 119.99850 * 0.02562 * 19 18 17 21 21 C 1.40029 * 119.99979 * 179.97438 * 19 18 17 22 22 N 1.30742 * 120.00173 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00115 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47288 * 90.00219 * 23 21 19 25 25 H 1.48502 * 109.47070 * 210.00371 * 23 21 19 26 26 H 1.48499 * 109.46886 * 330.00131 * 23 21 19 27 27 N 1.31933 * 119.58529 * 5.03753 * 14 13 11 28 28 H 1.08999 * 109.47258 * 274.33175 * 1 2 3 29 29 H 1.09001 * 109.46715 * 34.32726 * 1 2 3 30 30 H 1.09001 * 109.47218 * 154.33190 * 1 2 3 31 31 H 1.08996 * 109.47125 * 205.66607 * 3 2 1 32 32 H 1.09002 * 109.46954 * 325.66876 * 3 2 1 33 33 H 1.09004 * 109.46995 * 85.66511 * 3 2 1 34 34 H 1.09004 * 117.50707 * 145.03914 * 4 2 1 35 35 H 1.08990 * 117.49191 * 0.02562 * 4 2 1 36 36 H 1.09000 * 109.46794 * 123.75467 * 7 5 4 37 37 H 1.08994 * 109.47136 * 3.74988 * 7 5 4 38 38 H 0.96999 * 120.00051 * 0.27614 * 8 7 5 39 39 H 0.97002 * 119.99888 * 354.84174 * 13 11 9 40 40 H 1.07994 * 120.25270 * 359.97017 * 15 14 13 41 41 H 1.07998 * 120.66082 * 179.97438 * 16 15 14 42 42 H 1.08004 * 120.42846 * 179.97438 * 17 16 15 43 43 H 0.96993 * 120.00313 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1900 1.3803 0.0000 4 6 2.2367 -1.1222 -0.7646 5 6 2.2364 -1.1208 0.7655 6 1 1.6112 -1.8579 1.2693 7 6 3.5490 -0.7755 1.4718 8 7 4.0095 -1.9346 2.2403 9 6 5.1534 -1.8617 2.9493 10 8 5.8022 -0.8362 2.9506 11 6 5.6232 -3.0437 3.7325 12 8 4.9747 -4.0694 3.7307 13 7 6.7674 -2.9710 4.4410 14 6 7.1501 -4.0323 5.2549 15 6 8.2775 -3.9044 6.0702 16 6 8.6569 -4.9631 6.8812 17 6 7.9016 -6.1219 6.8568 18 6 6.7778 -6.1889 6.0147 19 6 5.9960 -7.3659 5.9794 20 1 6.2625 -8.2098 6.5983 21 6 4.8755 -7.4373 5.1427 22 7 4.5526 -6.4154 4.3937 23 14 3.8419 -8.9926 5.0965 24 1 2.7657 -8.9022 6.1157 25 1 3.2361 -9.1445 3.7492 26 1 4.7022 -10.1674 5.3878 27 7 6.4407 -5.1447 5.2512 28 1 -0.3634 0.0776 1.0247 29 1 -0.3633 0.8487 -0.5795 30 1 -0.3634 -0.9263 -0.4451 31 1 3.1823 1.3086 -0.4451 32 1 1.5810 2.0742 -0.5796 33 1 2.2766 1.7416 1.0248 34 1 3.1719 -0.8771 -1.2679 35 1 1.6113 -1.8597 -1.2675 36 1 3.3886 0.0665 2.1452 37 1 4.3017 -0.5091 0.7298 38 1 3.4930 -2.7556 2.2361 39 1 7.3241 -2.1787 4.3833 40 1 8.8489 -2.9881 6.0687 41 1 9.5253 -4.8849 7.5185 42 1 8.1718 -6.9640 7.4766 43 1 3.7767 -6.4650 3.8139 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889922194.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:31 Heat of formation + Delta-G solvation = -12.001132 kcal Electronic energy + Delta-G solvation = -25877.310684 eV Core-core repulsion = 22116.330212 eV Total energy + Delta-G solvation = -3760.980472 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.73134 -40.41779 -39.60008 -38.83949 -36.35987 -35.52282 -34.78921 -32.27025 -31.10660 -30.64657 -28.77667 -27.98884 -27.46984 -25.44083 -23.47818 -22.78456 -22.23868 -21.16462 -20.17985 -19.49293 -18.72342 -18.20378 -17.39998 -16.97881 -16.63013 -16.44334 -16.28799 -15.75735 -15.50683 -15.33496 -15.17210 -14.81736 -14.65199 -14.48214 -14.26122 -13.79404 -13.76270 -13.37137 -13.10746 -12.88628 -12.87653 -12.74269 -12.61227 -12.56596 -12.35903 -12.31192 -11.96741 -11.76289 -11.60247 -11.02242 -10.91771 -10.75584 -10.45238 -10.21978 -9.93607 -9.19930 -8.92141 -8.08550 -6.42570 0.36932 1.02869 1.27321 1.37997 1.43022 1.53951 1.56744 2.27927 2.37239 2.57234 2.81695 2.98340 3.50340 3.55448 3.79431 3.86072 4.01542 4.15805 4.21254 4.32914 4.45927 4.63609 4.67334 4.79157 4.80305 4.81945 4.92366 4.94367 4.98627 5.00651 5.05539 5.08117 5.13212 5.26550 5.27176 5.30847 5.45664 5.63340 5.71210 5.89744 5.98735 6.15679 6.29505 6.54401 6.71364 6.84253 7.03907 7.29003 8.25129 8.55718 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013750 B = 0.003376 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2035.823206 B = 8292.526517 C =10166.993611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.111 4.111 3 C -0.122 4.122 4 C -0.165 4.165 5 C -0.174 4.174 6 H 0.113 0.887 7 C 0.154 3.846 8 N -0.688 5.688 9 C 0.518 3.482 10 O -0.546 6.546 11 C 0.460 3.540 12 O -0.420 6.420 13 N -0.633 5.633 14 C 0.346 3.654 15 C -0.343 4.343 16 C -0.033 4.033 17 C -0.322 4.322 18 C 0.236 3.764 19 C -0.461 4.461 20 H 0.087 0.913 21 C 0.014 3.986 22 N -0.695 5.695 23 Si 0.977 3.023 24 H -0.267 1.267 25 H -0.271 1.271 26 H -0.258 1.258 27 N -0.506 5.506 28 H 0.059 0.941 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.417 0.583 39 H 0.424 0.576 40 H 0.130 0.870 41 H 0.139 0.861 42 H 0.108 0.892 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.463 11.876 -9.906 17.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.111 4.111 3 C -0.179 4.179 4 C -0.202 4.202 5 C -0.192 4.192 6 H 0.131 0.869 7 C 0.032 3.968 8 N -0.341 5.341 9 C 0.298 3.702 10 O -0.425 6.425 11 C 0.238 3.762 12 O -0.285 6.285 13 N -0.283 5.283 14 C 0.109 3.891 15 C -0.368 4.368 16 C -0.057 4.057 17 C -0.345 4.345 18 C 0.110 3.890 19 C -0.491 4.491 20 H 0.106 0.894 21 C -0.212 4.212 22 N -0.314 5.314 23 Si 0.798 3.202 24 H -0.192 1.192 25 H -0.196 1.196 26 H -0.182 1.182 27 N -0.226 5.226 28 H 0.078 0.922 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.116 0.884 35 H 0.122 0.878 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.254 0.746 39 H 0.263 0.737 40 H 0.147 0.853 41 H 0.157 0.843 42 H 0.127 0.873 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.464 11.898 -10.658 18.077 hybrid contribution 0.568 -0.642 0.650 1.076 sum -7.896 11.256 -10.008 17.006 Atomic orbital electron populations 1.21401 0.90910 1.02753 1.02295 1.21729 0.95530 0.91326 1.02539 1.21428 1.00336 0.93799 1.02304 1.23458 1.02866 1.01293 0.92574 1.22556 0.97608 1.03974 0.95100 0.86900 1.21044 0.94521 0.86998 0.94255 1.45775 1.23152 1.18145 1.46984 1.20109 0.82231 0.87492 0.80336 1.90687 1.56212 1.31670 1.63913 1.20744 0.83472 0.89242 0.82730 1.91204 1.52486 1.28628 1.56150 1.42984 1.23293 1.18749 1.43236 1.19011 0.91578 0.88512 0.90048 1.20965 1.03641 1.02824 1.09377 1.21043 0.97363 0.91798 0.95501 1.21849 1.02507 1.00539 1.09581 1.18874 0.90568 0.91555 0.87970 1.19917 1.08763 0.98970 1.21498 0.89449 1.26997 0.98900 1.00616 0.94642 1.70455 1.19497 1.28537 1.12898 0.85292 0.78330 0.78239 0.78332 1.19162 1.19576 1.18219 1.68597 1.30044 0.98816 1.25117 0.92162 0.90862 0.92066 0.92299 0.90704 0.92173 0.88383 0.87792 0.90805 0.90928 0.74577 0.73748 0.85255 0.84284 0.87343 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.40 9.85 71.98 0.71 -0.69 16 2 C -0.11 -1.58 2.70 -52.15 -0.14 -1.72 16 3 C -0.12 -1.59 8.86 71.98 0.64 -0.95 16 4 C -0.17 -2.48 9.47 30.62 0.29 -2.19 16 5 C -0.17 -3.03 5.56 -10.79 -0.06 -3.09 16 6 H 0.11 1.99 8.04 -2.39 -0.02 1.97 16 7 C 0.15 3.36 5.04 86.38 0.43 3.79 16 8 N -0.69 -19.10 5.55 -464.49 -2.58 -21.68 16 9 C 0.52 17.88 7.89 87.25 0.69 18.57 16 10 O -0.55 -19.69 16.48 -3.24 -0.05 -19.74 16 11 C 0.46 19.42 7.84 87.25 0.68 20.10 16 12 O -0.42 -20.64 12.24 -3.25 -0.04 -20.68 16 13 N -0.63 -26.56 5.37 -309.70 -1.66 -28.22 16 14 C 0.35 17.10 7.42 133.31 0.99 18.09 16 15 C -0.34 -14.97 9.96 22.73 0.23 -14.75 16 16 C -0.03 -1.43 10.15 22.39 0.23 -1.21 16 17 C -0.32 -16.03 9.83 22.87 0.22 -15.81 16 18 C 0.24 13.39 6.55 40.20 0.26 13.66 16 19 C -0.46 -25.54 9.14 23.47 0.21 -25.33 16 20 H 0.09 4.53 7.85 -2.91 -0.02 4.51 16 21 C 0.01 0.73 5.50 85.29 0.47 1.20 16 22 N -0.69 -38.05 8.99 21.84 0.20 -37.86 16 23 Si 0.98 39.09 29.56 68.60 2.03 41.12 16 24 H -0.27 -10.37 7.11 99.48 0.71 -9.66 16 25 H -0.27 -10.40 7.11 99.48 0.71 -9.70 16 26 H -0.26 -10.00 7.11 99.48 0.71 -9.29 16 27 N -0.51 -28.72 5.73 -186.43 -1.07 -29.79 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 0.72 7.92 -2.39 -0.02 0.70 16 30 H 0.06 0.70 7.90 -2.39 -0.02 0.69 16 31 H 0.06 0.78 7.90 -2.39 -0.02 0.76 16 32 H 0.07 0.79 7.92 -2.39 -0.02 0.77 16 33 H 0.06 0.83 7.84 -2.38 -0.02 0.81 16 34 H 0.10 1.46 7.94 -2.38 -0.02 1.44 16 35 H 0.10 1.41 8.05 -2.39 -0.02 1.39 16 36 H 0.07 1.64 7.77 -2.39 -0.02 1.62 16 37 H 0.07 1.59 7.87 -2.39 -0.02 1.57 16 38 H 0.42 11.40 7.87 -92.71 -0.73 10.67 16 39 H 0.42 14.96 8.18 -92.71 -0.76 14.20 16 40 H 0.13 4.67 8.06 -2.91 -0.02 4.64 16 41 H 0.14 4.81 8.06 -2.91 -0.02 4.79 16 42 H 0.11 4.99 8.06 -2.91 -0.02 4.97 16 43 H 0.27 13.85 8.29 -92.71 -0.77 13.08 16 Total: -1.00 -68.77 364.67 2.24 -66.53 By element: Atomic # 1 Polarization: 41.09 SS G_CDS: -0.44 Total: 40.66 kcal Atomic # 6 Polarization: 3.81 SS G_CDS: 5.86 Total: 9.67 kcal Atomic # 7 Polarization: -112.43 SS G_CDS: -5.11 Total: -117.54 kcal Atomic # 8 Polarization: -40.33 SS G_CDS: -0.09 Total: -40.43 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 2.03 Total: 41.12 kcal Total: -68.77 2.24 -66.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889922194.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.524 kcal (2) G-P(sol) polarization free energy of solvation -68.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds