Wall clock time and date at job start Tue Mar 31 2020 11:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 115.56091 * 2 1 4 4 C 1.53075 * 117.51178 * 214.29719 * 2 1 3 5 5 C 1.52998 * 59.98371 * 252.52136 * 4 2 1 6 6 H 1.08999 * 117.49784 * 252.49835 * 5 4 2 7 7 C 1.53007 * 117.50018 * 107.50026 * 5 4 2 8 8 N 1.46496 * 109.46814 * 116.25102 * 7 5 4 9 9 C 1.34777 * 119.99912 * 179.97438 * 8 7 5 10 10 O 1.21366 * 119.99934 * 0.02562 * 9 8 7 11 11 C 1.49365 * 120.00286 * 179.97438 * 9 8 7 12 12 O 1.21352 * 119.99852 * 0.02562 * 11 9 8 13 13 N 1.34777 * 120.00279 * 180.02562 * 11 9 8 14 14 C 1.39107 * 120.00213 * 174.81370 * 13 11 9 15 15 C 1.39713 * 119.57953 * 185.16796 * 14 13 11 16 16 C 1.38648 * 119.49091 * 179.97438 * 15 14 13 17 17 C 1.38347 * 118.67491 * 359.73279 * 16 15 14 18 18 C 1.40591 * 119.13105 * 0.53319 * 17 16 15 19 19 C 1.41345 * 119.78195 * 179.73175 * 18 17 16 20 20 H 1.08003 * 119.99705 * 354.53757 * 19 18 17 21 21 C 1.40023 * 119.99670 * 174.27229 * 19 18 17 22 22 N 1.30737 * 120.00419 * 5.12720 * 21 19 18 23 23 Si 1.86810 * 119.99697 * 185.13382 * 21 19 18 24 24 H 1.48499 * 109.47091 * 94.99333 * 23 21 19 25 25 H 1.48501 * 109.46952 * 214.99675 * 23 21 19 26 26 H 1.48498 * 109.46938 * 334.99170 * 23 21 19 27 27 N 1.31935 * 119.57992 * 5.14598 * 14 13 11 28 28 H 1.09003 * 109.46873 * 274.31474 * 1 2 3 29 29 H 1.08995 * 109.46872 * 34.30763 * 1 2 3 30 30 H 1.08994 * 109.47144 * 154.31408 * 1 2 3 31 31 H 1.09004 * 109.47036 * 205.69246 * 3 2 1 32 32 H 1.09003 * 109.47011 * 325.68878 * 3 2 1 33 33 H 1.08996 * 109.47291 * 85.68755 * 3 2 1 34 34 H 1.08996 * 117.49078 * 145.03289 * 4 2 1 35 35 H 1.09000 * 117.53018 * 359.97438 * 4 2 1 36 36 H 1.09006 * 109.46660 * 356.25298 * 7 5 4 37 37 H 1.09001 * 109.46965 * 236.25612 * 7 5 4 38 38 H 0.97003 * 120.00314 * 0.02562 * 8 7 5 39 39 H 0.97003 * 119.99514 * 354.80563 * 13 11 9 40 40 H 1.08001 * 120.25138 * 359.95810 * 15 14 13 41 41 H 1.08006 * 120.66187 * 180.02562 * 16 15 14 42 42 H 1.08001 * 120.43093 * 180.25362 * 17 16 15 43 43 H 0.97007 * 120.00075 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2372 -1.1216 -0.7650 5 6 2.2365 -1.1210 0.7650 6 1 3.1714 -0.8751 1.2685 7 6 1.3589 -2.1562 1.4715 8 7 2.2060 -3.0719 2.2396 9 6 1.6470 -4.0724 2.9486 10 8 0.4417 -4.2151 2.9505 11 6 2.5107 -5.0065 3.7313 12 8 3.7158 -4.8641 3.7291 13 7 1.9516 -6.0074 4.4399 14 6 2.7592 -6.9414 5.0807 15 6 2.1729 -8.0357 5.7216 16 6 2.9796 -8.9658 6.3593 17 6 4.3506 -8.7823 6.3359 18 6 4.8795 -7.6575 5.6789 19 6 6.2779 -7.4536 5.6514 20 1 6.9304 -8.1104 6.2075 21 6 6.8176 -6.4034 4.8987 22 7 6.0249 -5.5515 4.3029 23 14 8.6703 -6.2198 4.7458 24 1 9.1319 -6.8803 3.4984 25 1 9.0229 -4.7779 4.7022 26 1 9.3289 -6.8552 5.9153 27 7 4.0689 -6.7827 5.0752 28 1 -0.3633 0.0773 1.0248 29 1 -0.3633 0.8488 -0.5792 30 1 -0.3633 -0.9261 -0.4454 31 1 3.1824 1.3084 -0.4456 32 1 1.5812 2.0742 -0.5793 33 1 2.2773 1.7414 1.0247 34 1 3.1723 -0.8756 -1.2680 35 1 1.6126 -1.8598 -1.2680 36 1 0.7935 -2.7202 0.7296 37 1 0.6687 -1.6482 2.1451 38 1 3.1693 -2.9577 2.2384 39 1 0.9861 -6.0763 4.5032 40 1 1.0997 -8.1560 5.7205 41 1 2.5465 -9.8190 6.8602 42 1 5.0058 -9.4915 6.8199 43 1 6.3988 -4.8241 3.7811 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889922198.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:34 Heat of formation + Delta-G solvation = 6.846950 kcal Electronic energy + Delta-G solvation = -25876.486412 eV Core-core repulsion = 22116.323254 eV Total energy + Delta-G solvation = -3760.163157 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.24134 -39.14067 -38.38201 -37.17054 -34.85757 -33.97124 -33.02014 -30.38725 -29.92435 -29.21092 -28.08777 -26.99304 -25.68072 -23.94707 -21.74846 -21.41281 -21.01861 -19.79752 -18.91912 -18.13352 -17.14930 -16.62386 -15.91457 -15.71467 -15.32707 -14.73142 -14.54472 -14.51453 -14.45952 -14.00097 -13.86802 -13.64151 -13.36237 -13.05668 -12.87365 -12.72885 -12.47205 -12.28482 -12.01913 -11.98237 -11.67554 -11.32408 -11.21584 -11.06099 -10.99641 -10.68667 -10.52911 -10.26286 -9.98382 -9.91160 -9.78307 -9.09236 -9.08199 -8.97777 -8.03401 -7.33028 -7.05580 -6.22694 -4.45067 1.92976 2.75314 2.82193 3.08740 3.13639 3.16555 3.23396 3.40290 3.97562 4.01692 4.08863 4.30777 4.45916 4.55481 4.76340 4.86537 4.96328 5.04678 5.22763 5.33002 5.48842 5.54562 5.56211 5.61887 5.64371 5.67244 5.83490 5.92047 5.95864 6.04440 6.07093 6.36618 6.44163 6.57869 6.75471 6.79650 7.15741 7.29264 7.50339 7.53022 7.76265 7.90674 8.05045 8.18096 8.37238 8.63302 8.93761 9.01791 10.14467 10.41283 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013776 B = 0.003376 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.094160 B = 8290.817171 C =10169.435586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.119 4.119 3 C -0.116 4.116 4 C -0.167 4.167 5 C -0.163 4.163 6 H 0.113 0.887 7 C 0.152 3.848 8 N -0.703 5.703 9 C 0.508 3.492 10 O -0.536 6.536 11 C 0.467 3.533 12 O -0.387 6.387 13 N -0.639 5.639 14 C 0.368 3.632 15 C -0.348 4.348 16 C -0.036 4.036 17 C -0.300 4.300 18 C 0.271 3.729 19 C -0.424 4.424 20 H 0.084 0.916 21 C 0.060 3.940 22 N -0.663 5.663 23 Si 0.898 3.102 24 H -0.272 1.272 25 H -0.278 1.278 26 H -0.263 1.263 27 N -0.475 5.475 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.415 0.585 39 H 0.411 0.589 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.992 11.527 -8.823 16.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.119 4.119 3 C -0.173 4.173 4 C -0.204 4.204 5 C -0.181 4.181 6 H 0.131 0.869 7 C 0.029 3.971 8 N -0.357 5.357 9 C 0.290 3.710 10 O -0.413 6.413 11 C 0.243 3.757 12 O -0.249 6.249 13 N -0.287 5.287 14 C 0.130 3.870 15 C -0.374 4.374 16 C -0.060 4.060 17 C -0.323 4.323 18 C 0.146 3.854 19 C -0.455 4.455 20 H 0.102 0.898 21 C -0.169 4.169 22 N -0.282 5.282 23 Si 0.723 3.277 24 H -0.197 1.197 25 H -0.203 1.203 26 H -0.187 1.187 27 N -0.194 5.194 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.251 0.749 39 H 0.247 0.753 40 H 0.113 0.887 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.548 12.515 -9.440 16.989 hybrid contribution 0.321 -0.664 0.324 0.806 sum -6.227 11.851 -9.117 16.197 Atomic orbital electron populations 1.21389 0.91842 1.02194 1.02224 1.21612 0.95033 0.91254 1.04030 1.21371 0.99992 0.93858 1.02079 1.23387 1.02487 1.01034 0.93491 1.22630 1.01484 0.99510 0.94510 0.86870 1.20897 0.92259 0.89412 0.94541 1.45735 1.11974 1.29730 1.48275 1.20814 0.88293 0.81838 0.80082 1.90695 1.14878 1.72429 1.63266 1.20115 0.89125 0.83396 0.83071 1.91208 1.11362 1.66634 1.55743 1.42992 1.10055 1.26343 1.49341 1.18551 0.90478 0.86671 0.91289 1.20520 0.98143 1.01484 1.17274 1.20586 0.93631 0.96136 0.95674 1.21654 0.94382 1.03198 1.13115 1.18375 0.93178 0.86603 0.87257 1.19592 0.90615 1.10822 1.24470 0.89822 1.26161 0.99433 0.95717 0.95576 1.70309 1.34761 1.07015 1.16116 0.86467 0.83578 0.78170 0.79531 1.19707 1.20289 1.18692 1.68641 0.99005 1.28912 1.22841 0.91892 0.92007 0.92163 0.92346 0.92010 0.92047 0.88542 0.88506 0.91109 0.90823 0.74878 0.75316 0.88710 0.88361 0.88367 0.91695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 8.86 37.16 0.33 -0.55 16 2 C -0.12 -0.95 2.70 -154.47 -0.42 -1.37 16 3 C -0.12 -0.81 9.85 37.16 0.37 -0.44 16 4 C -0.17 -1.39 9.47 -26.69 -0.25 -1.65 16 5 C -0.16 -1.51 5.56 -90.62 -0.50 -2.01 16 6 H 0.11 1.05 8.04 -51.93 -0.42 0.63 16 7 C 0.15 1.73 5.04 -4.04 -0.02 1.71 16 8 N -0.70 -9.89 5.55 -60.75 -0.34 -10.23 16 9 C 0.51 8.83 7.89 -11.62 -0.09 8.73 16 10 O -0.54 -9.86 16.48 5.48 0.09 -9.77 16 11 C 0.47 9.70 7.84 -11.62 -0.09 9.61 16 12 O -0.39 -9.22 12.24 5.50 0.07 -9.15 16 13 N -0.64 -13.39 5.37 -11.83 -0.06 -13.46 16 14 C 0.37 9.05 7.42 -155.10 -1.15 7.90 16 15 C -0.35 -7.88 9.96 -38.88 -0.39 -8.27 16 16 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 17 C -0.30 -7.45 9.83 -38.65 -0.38 -7.83 16 18 C 0.27 7.50 6.55 -85.00 -0.56 6.94 16 19 C -0.42 -11.42 9.13 -37.73 -0.34 -11.76 16 20 H 0.08 2.11 7.85 -52.48 -0.41 1.70 16 21 C 0.06 1.53 5.49 -17.35 -0.10 1.43 16 22 N -0.66 -17.62 9.02 55.55 0.50 -17.12 16 23 Si 0.90 18.70 29.56 -169.99 -5.03 13.67 16 24 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 25 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 26 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 27 N -0.47 -13.14 5.75 -10.28 -0.06 -13.20 16 28 H 0.06 0.48 7.84 -51.93 -0.41 0.07 16 29 H 0.06 0.39 7.92 -51.93 -0.41 -0.02 16 30 H 0.06 0.45 7.90 -51.93 -0.41 0.04 16 31 H 0.06 0.39 7.90 -51.93 -0.41 -0.02 16 32 H 0.06 0.37 7.92 -51.93 -0.41 -0.04 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.10 0.74 8.05 -51.93 -0.42 0.33 16 35 H 0.10 0.80 7.94 -51.93 -0.41 0.39 16 36 H 0.07 0.82 7.88 -51.93 -0.41 0.41 16 37 H 0.07 0.85 7.77 -51.93 -0.40 0.45 16 38 H 0.41 5.65 7.87 -40.82 -0.32 5.33 16 39 H 0.41 7.40 8.18 -40.82 -0.33 7.06 16 40 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 41 H 0.10 1.87 8.06 -52.48 -0.42 1.45 16 42 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 43 H 0.27 6.65 8.29 -40.82 -0.34 6.31 16 LS Contribution 364.71 15.07 5.50 5.50 Total: -1.00 -31.33 364.71 -9.33 -40.66 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: -6.00 Total: 11.87 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -4.00 Total: 1.22 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: 0.04 Total: -54.00 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: 0.16 Total: -18.92 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.33 -9.33 -40.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889922198.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.510 kcal (2) G-P(sol) polarization free energy of solvation -31.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds