Wall clock time and date at job start Tue Mar 31 2020 11:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52997 * 115.56091 * 2 1 4 4 C 1.53075 * 117.51178 * 214.29719 * 2 1 3 5 5 C 1.52998 * 59.98371 * 252.52136 * 4 2 1 6 6 H 1.08999 * 117.49784 * 252.49835 * 5 4 2 7 7 C 1.53007 * 117.50018 * 107.50026 * 5 4 2 8 8 N 1.46496 * 109.46814 * 116.25102 * 7 5 4 9 9 C 1.34777 * 119.99912 * 179.97438 * 8 7 5 10 10 O 1.21366 * 119.99934 * 0.02562 * 9 8 7 11 11 C 1.49365 * 120.00286 * 179.97438 * 9 8 7 12 12 O 1.21352 * 119.99852 * 0.02562 * 11 9 8 13 13 N 1.34777 * 120.00279 * 180.02562 * 11 9 8 14 14 C 1.39107 * 120.00213 * 174.81370 * 13 11 9 15 15 C 1.39713 * 119.57953 * 185.16796 * 14 13 11 16 16 C 1.38648 * 119.49091 * 179.97438 * 15 14 13 17 17 C 1.38347 * 118.67491 * 359.73279 * 16 15 14 18 18 C 1.40591 * 119.13105 * 0.53319 * 17 16 15 19 19 C 1.41345 * 119.78195 * 179.73175 * 18 17 16 20 20 H 1.08003 * 119.99705 * 354.53757 * 19 18 17 21 21 C 1.40023 * 119.99670 * 174.27229 * 19 18 17 22 22 N 1.30737 * 120.00419 * 5.12720 * 21 19 18 23 23 Si 1.86810 * 119.99697 * 185.13382 * 21 19 18 24 24 H 1.48499 * 109.47091 * 94.99333 * 23 21 19 25 25 H 1.48501 * 109.46952 * 214.99675 * 23 21 19 26 26 H 1.48498 * 109.46938 * 334.99170 * 23 21 19 27 27 N 1.31935 * 119.57992 * 5.14598 * 14 13 11 28 28 H 1.09003 * 109.46873 * 274.31474 * 1 2 3 29 29 H 1.08995 * 109.46872 * 34.30763 * 1 2 3 30 30 H 1.08994 * 109.47144 * 154.31408 * 1 2 3 31 31 H 1.09004 * 109.47036 * 205.69246 * 3 2 1 32 32 H 1.09003 * 109.47011 * 325.68878 * 3 2 1 33 33 H 1.08996 * 109.47291 * 85.68755 * 3 2 1 34 34 H 1.08996 * 117.49078 * 145.03289 * 4 2 1 35 35 H 1.09000 * 117.53018 * 359.97438 * 4 2 1 36 36 H 1.09006 * 109.46660 * 356.25298 * 7 5 4 37 37 H 1.09001 * 109.46965 * 236.25612 * 7 5 4 38 38 H 0.97003 * 120.00314 * 0.02562 * 8 7 5 39 39 H 0.97003 * 119.99514 * 354.80563 * 13 11 9 40 40 H 1.08001 * 120.25138 * 359.95810 * 15 14 13 41 41 H 1.08006 * 120.66187 * 180.02562 * 16 15 14 42 42 H 1.08001 * 120.43093 * 180.25362 * 17 16 15 43 43 H 0.97007 * 120.00075 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2372 -1.1216 -0.7650 5 6 2.2365 -1.1210 0.7650 6 1 3.1714 -0.8751 1.2685 7 6 1.3589 -2.1562 1.4715 8 7 2.2060 -3.0719 2.2396 9 6 1.6470 -4.0724 2.9486 10 8 0.4417 -4.2151 2.9505 11 6 2.5107 -5.0065 3.7313 12 8 3.7158 -4.8641 3.7291 13 7 1.9516 -6.0074 4.4399 14 6 2.7592 -6.9414 5.0807 15 6 2.1729 -8.0357 5.7216 16 6 2.9796 -8.9658 6.3593 17 6 4.3506 -8.7823 6.3359 18 6 4.8795 -7.6575 5.6789 19 6 6.2779 -7.4536 5.6514 20 1 6.9304 -8.1104 6.2075 21 6 6.8176 -6.4034 4.8987 22 7 6.0249 -5.5515 4.3029 23 14 8.6703 -6.2198 4.7458 24 1 9.1319 -6.8803 3.4984 25 1 9.0229 -4.7779 4.7022 26 1 9.3289 -6.8552 5.9153 27 7 4.0689 -6.7827 5.0752 28 1 -0.3633 0.0773 1.0248 29 1 -0.3633 0.8488 -0.5792 30 1 -0.3633 -0.9261 -0.4454 31 1 3.1824 1.3084 -0.4456 32 1 1.5812 2.0742 -0.5793 33 1 2.2773 1.7414 1.0247 34 1 3.1723 -0.8756 -1.2680 35 1 1.6126 -1.8598 -1.2680 36 1 0.7935 -2.7202 0.7296 37 1 0.6687 -1.6482 2.1451 38 1 3.1693 -2.9577 2.2384 39 1 0.9861 -6.0763 4.5032 40 1 1.0997 -8.1560 5.7205 41 1 2.5465 -9.8190 6.8602 42 1 5.0058 -9.4915 6.8199 43 1 6.3988 -4.8241 3.7811 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889922198.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:33 Heat of formation + Delta-G solvation = -12.208793 kcal Electronic energy + Delta-G solvation = -25877.312731 eV Core-core repulsion = 22116.323254 eV Total energy + Delta-G solvation = -3760.989477 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.73167 -40.41874 -39.60131 -38.83979 -36.36028 -35.52259 -34.79006 -32.27357 -31.10721 -30.64652 -28.77700 -27.98957 -27.47031 -25.44194 -23.47872 -22.78563 -22.23997 -21.16531 -20.17941 -19.49341 -18.72423 -18.20460 -17.39136 -17.01158 -16.58417 -16.44713 -16.28875 -15.78121 -15.59405 -15.23878 -15.13293 -14.86323 -14.66411 -14.47779 -14.25598 -13.79757 -13.76365 -13.37160 -13.10744 -12.91070 -12.87876 -12.74317 -12.61207 -12.55484 -12.36019 -12.31393 -11.96735 -11.75609 -11.59396 -11.02302 -10.91878 -10.75680 -10.45287 -10.22021 -9.93676 -9.20041 -8.92089 -8.09331 -6.42450 0.36768 1.02590 1.27158 1.37797 1.42950 1.54649 1.56012 2.27865 2.37317 2.56988 2.81672 2.97979 3.50251 3.55364 3.79321 3.86112 4.00795 4.15759 4.21231 4.33053 4.45856 4.63525 4.67265 4.79205 4.80311 4.81783 4.92216 4.94348 4.98523 5.00663 5.05560 5.08153 5.13141 5.26658 5.27129 5.30865 5.45717 5.63291 5.71062 5.89658 5.98691 6.15649 6.29458 6.54359 6.71372 6.84199 7.03814 7.28869 8.24895 8.55576 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013776 B = 0.003376 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.094160 B = 8290.817171 C =10169.435586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.110 4.110 3 C -0.116 4.116 4 C -0.166 4.166 5 C -0.174 4.174 6 H 0.113 0.887 7 C 0.154 3.846 8 N -0.688 5.688 9 C 0.518 3.482 10 O -0.546 6.546 11 C 0.460 3.540 12 O -0.420 6.420 13 N -0.633 5.633 14 C 0.346 3.654 15 C -0.342 4.342 16 C -0.033 4.033 17 C -0.321 4.321 18 C 0.236 3.764 19 C -0.461 4.461 20 H 0.087 0.913 21 C 0.014 3.986 22 N -0.695 5.695 23 Si 0.977 3.023 24 H -0.268 1.268 25 H -0.271 1.271 26 H -0.258 1.258 27 N -0.506 5.506 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.060 0.940 34 H 0.104 0.896 35 H 0.097 0.903 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.417 0.583 39 H 0.424 0.576 40 H 0.130 0.870 41 H 0.140 0.860 42 H 0.109 0.891 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.555 12.153 -9.477 17.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.111 4.111 3 C -0.174 4.174 4 C -0.203 4.203 5 C -0.192 4.192 6 H 0.131 0.869 7 C 0.032 3.968 8 N -0.340 5.340 9 C 0.298 3.702 10 O -0.425 6.425 11 C 0.238 3.762 12 O -0.285 6.285 13 N -0.283 5.283 14 C 0.108 3.892 15 C -0.368 4.368 16 C -0.057 4.057 17 C -0.344 4.344 18 C 0.110 3.890 19 C -0.492 4.492 20 H 0.105 0.895 21 C -0.211 4.211 22 N -0.314 5.314 23 Si 0.798 3.202 24 H -0.193 1.193 25 H -0.195 1.195 26 H -0.181 1.181 27 N -0.226 5.226 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.122 0.878 35 H 0.116 0.884 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.254 0.746 39 H 0.263 0.737 40 H 0.148 0.852 41 H 0.157 0.843 42 H 0.127 0.873 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.153 13.158 -10.106 18.068 hybrid contribution 0.341 -0.874 0.528 1.077 sum -6.812 12.284 -9.578 17.001 Atomic orbital electron populations 1.21429 0.91381 1.02734 1.02326 1.21728 0.95418 0.91433 1.02498 1.21401 1.00295 0.93339 1.02316 1.23456 1.02964 1.01239 0.92615 1.22556 1.01545 1.00031 0.95082 0.86861 1.21046 0.92263 0.89238 0.94276 1.45773 1.12462 1.28768 1.47039 1.20110 0.87535 0.82122 0.80406 1.90692 1.14826 1.72946 1.64030 1.20741 0.89259 0.83467 0.82722 1.91205 1.12953 1.67526 1.56783 1.42983 1.10456 1.25890 1.48933 1.19010 0.90310 0.88023 0.91815 1.20968 1.00010 1.00306 1.15477 1.21047 0.92750 0.97077 0.94838 1.21854 0.95926 1.02998 1.13651 1.18877 0.94026 0.87817 0.88233 1.19916 0.91012 1.12202 1.26080 0.89459 1.26992 1.04371 0.94939 0.94809 1.70458 1.36848 1.07463 1.16679 0.85279 0.77148 0.78279 0.79485 1.19317 1.19540 1.18131 1.68595 1.00440 1.29775 1.23789 0.92130 0.90701 0.92337 0.92079 0.90864 0.92117 0.87808 0.88437 0.91012 0.90715 0.74574 0.73747 0.85240 0.84269 0.87327 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.59 8.86 71.98 0.64 -0.95 16 2 C -0.11 -1.57 2.70 -52.16 -0.14 -1.71 16 3 C -0.12 -1.39 9.85 71.98 0.71 -0.69 16 4 C -0.17 -2.52 9.47 30.62 0.29 -2.23 16 5 C -0.17 -3.02 5.56 -10.79 -0.06 -3.08 16 6 H 0.11 1.99 8.04 -2.39 -0.02 1.97 16 7 C 0.15 3.36 5.04 86.38 0.43 3.79 16 8 N -0.69 -19.10 5.55 -464.48 -2.58 -21.68 16 9 C 0.52 17.88 7.89 87.24 0.69 18.56 16 10 O -0.55 -19.69 16.48 -3.30 -0.05 -19.75 16 11 C 0.46 19.41 7.84 87.24 0.68 20.10 16 12 O -0.42 -20.65 12.24 -3.25 -0.04 -20.69 16 13 N -0.63 -26.55 5.37 -309.71 -1.66 -28.21 16 14 C 0.35 17.09 7.42 133.31 0.99 18.08 16 15 C -0.34 -14.94 9.96 22.72 0.23 -14.71 16 16 C -0.03 -1.43 10.15 22.39 0.23 -1.21 16 17 C -0.32 -16.00 9.83 22.87 0.22 -15.77 16 18 C 0.24 13.40 6.55 40.20 0.26 13.66 16 19 C -0.46 -25.58 9.13 23.47 0.21 -25.37 16 20 H 0.09 4.54 7.85 -2.91 -0.02 4.51 16 21 C 0.01 0.75 5.49 85.29 0.47 1.22 16 22 N -0.70 -38.09 9.02 21.84 0.20 -37.90 16 23 Si 0.98 39.12 29.56 68.60 2.03 41.15 16 24 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 25 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 26 H -0.26 -9.95 7.11 99.48 0.71 -9.25 16 27 N -0.51 -28.73 5.75 -186.43 -1.07 -29.80 16 28 H 0.06 0.83 7.84 -2.39 -0.02 0.81 16 29 H 0.07 0.78 7.92 -2.39 -0.02 0.77 16 30 H 0.06 0.78 7.90 -2.39 -0.02 0.76 16 31 H 0.06 0.70 7.90 -2.39 -0.02 0.68 16 32 H 0.07 0.72 7.92 -2.39 -0.02 0.70 16 33 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.10 1.43 8.05 -2.39 -0.02 1.41 16 35 H 0.10 1.47 7.94 -2.39 -0.02 1.45 16 36 H 0.07 1.59 7.88 -2.38 -0.02 1.57 16 37 H 0.07 1.65 7.77 -2.39 -0.02 1.63 16 38 H 0.42 11.40 7.87 -92.71 -0.73 10.67 16 39 H 0.42 14.95 8.18 -92.71 -0.76 14.19 16 40 H 0.13 4.67 8.06 -2.91 -0.02 4.64 16 41 H 0.14 4.81 8.06 -2.91 -0.02 4.79 16 42 H 0.11 4.99 8.06 -2.91 -0.02 4.97 16 43 H 0.27 13.84 8.29 -92.70 -0.77 13.07 16 Total: -1.00 -68.80 364.71 2.24 -66.56 By element: Atomic # 1 Polarization: 41.05 SS G_CDS: -0.44 Total: 40.62 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: 5.86 Total: 9.70 kcal Atomic # 7 Polarization: -112.47 SS G_CDS: -5.11 Total: -117.59 kcal Atomic # 8 Polarization: -40.34 SS G_CDS: -0.09 Total: -40.43 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.15 kcal Total: -68.80 2.24 -66.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889922198.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.353 kcal (2) G-P(sol) polarization free energy of solvation -68.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds