Wall clock time and date at job start Tue Mar 31 2020 11:07:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 112.85047 * 2 1 4 4 N 1.46501 * 109.47442 * 48.80526 * 3 2 1 5 5 C 1.34771 * 120.00393 * 180.02562 * 4 3 2 6 6 O 1.21358 * 119.99996 * 359.97438 * 5 4 3 7 7 C 1.49363 * 120.00148 * 179.97438 * 5 4 3 8 8 O 1.21358 * 119.99856 * 0.02562 * 7 5 4 9 9 N 1.34780 * 120.00031 * 179.97438 * 7 5 4 10 10 C 1.39113 * 119.99933 * 185.60600 * 9 7 5 11 11 C 1.39710 * 119.58041 * 18.95861 * 10 9 7 12 12 C 1.38647 * 119.49800 * 179.97438 * 11 10 9 13 13 C 1.38348 * 118.66813 * 359.74842 * 12 11 10 14 14 C 1.40591 * 119.13811 * 0.49431 * 13 12 11 15 15 C 1.41334 * 119.78860 * 179.76904 * 14 13 12 16 16 H 1.08000 * 120.00121 * 7.00120 * 15 14 13 17 17 C 1.40032 * 120.00118 * 187.00125 * 15 14 13 18 18 N 1.30744 * 119.99960 * 181.90605 * 17 15 14 19 19 Si 1.86799 * 119.99820 * 1.90781 * 17 15 14 20 20 H 1.48506 * 109.47180 * 179.97438 * 19 17 15 21 21 H 1.48500 * 109.47191 * 299.99672 * 19 17 15 22 22 H 1.48495 * 109.47229 * 60.00049 * 19 17 15 23 23 N 1.31930 * 119.58070 * 198.93132 * 10 9 7 24 24 C 1.53783 * 113.68870 * 131.26918 * 2 1 3 25 25 C 1.53778 * 87.08297 * 89.12617 * 24 2 1 26 26 C 1.53783 * 87.08180 * 25.43140 * 25 24 2 27 27 H 1.09001 * 109.46838 * 69.66615 * 1 2 3 28 28 H 1.09003 * 109.47732 * 189.66605 * 1 2 3 29 29 H 1.08996 * 109.47549 * 309.66965 * 1 2 3 30 30 H 1.08996 * 109.47172 * 288.79995 * 3 2 1 31 31 H 1.09003 * 109.47373 * 168.80049 * 3 2 1 32 32 H 0.97004 * 119.99799 * 359.97438 * 4 3 2 33 33 H 0.96992 * 120.00038 * 5.61525 * 9 7 5 34 34 H 1.08008 * 120.25321 * 359.95096 * 11 10 9 35 35 H 1.07999 * 120.66623 * 180.02562 * 12 11 10 36 36 H 1.08005 * 120.42985 * 180.24016 * 13 12 11 37 37 H 0.97002 * 120.00138 * 354.83241 * 18 17 15 38 38 H 1.09004 * 113.61309 * 203.67668 * 24 2 1 39 39 H 1.09002 * 113.61468 * 334.57766 * 24 2 1 40 40 H 1.08996 * 113.61389 * 270.88279 * 25 24 2 41 41 H 1.09005 * 113.68968 * 139.99003 * 25 24 2 42 42 H 1.09001 * 113.61696 * 220.01854 * 26 25 24 43 43 H 1.08998 * 113.61411 * 89.11252 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 7 1.4754 2.2132 1.0393 5 6 1.8402 3.4974 1.2243 6 8 2.7062 3.9882 0.5302 7 6 1.1784 4.3165 2.2836 8 8 0.3127 3.8256 2.9780 9 7 1.5435 5.6006 2.4689 10 6 1.0126 6.3287 3.5287 11 6 0.4348 5.6547 4.6075 12 6 -0.0933 6.3820 5.6632 13 6 -0.0262 7.7631 5.6169 14 6 0.5632 8.3828 4.5011 15 6 0.6346 9.7929 4.4373 16 1 0.3417 10.3876 5.2900 17 6 1.0852 10.4191 3.2687 18 7 1.1867 11.7217 3.2224 19 14 1.5413 9.3931 1.7758 20 1 1.9844 10.2880 0.6766 21 1 2.6429 8.4631 2.1320 22 1 0.3587 8.6126 1.3315 23 7 1.0616 7.6468 3.5026 24 6 2.1478 -0.9289 1.0585 25 6 2.0949 -2.0420 -0.0012 26 6 2.1460 -0.9281 -1.0602 27 1 -0.3633 0.3571 -0.9636 28 1 -0.3635 -1.0131 0.1725 29 1 -0.3634 0.6560 0.7910 30 1 1.9600 1.8733 -0.9728 31 1 3.1942 1.3533 0.1996 32 1 0.7829 1.8210 1.5939 33 1 2.1763 6.0172 1.8632 34 1 0.3995 4.5753 4.6189 35 1 -0.5440 5.8804 6.5068 36 1 -0.4252 8.3575 6.4256 37 1 0.8797 12.2590 3.9694 38 1 3.1609 -0.6487 1.3473 39 1 1.4972 -1.1094 1.9142 40 1 1.1594 -2.6013 -0.0006 41 1 2.9737 -2.6869 -0.0032 42 1 1.4939 -1.1080 -1.9150 43 1 3.1585 -0.6478 -1.3506 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890000232.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:54 Heat of formation + Delta-G solvation = -22.791308 kcal Electronic energy + Delta-G solvation = -25893.284633 eV Core-core repulsion = 22131.836264 eV Total energy + Delta-G solvation = -3761.448369 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.97989 -40.08927 -38.97670 -37.92269 -35.30291 -34.36752 -33.51997 -31.20472 -30.16214 -29.71289 -27.75438 -26.12540 -25.63350 -24.74741 -22.66774 -21.91399 -21.35695 -20.09121 -19.13060 -18.48983 -18.17158 -17.02248 -16.51177 -16.07877 -16.00324 -15.46518 -15.16405 -14.98907 -14.71800 -14.36552 -14.00150 -13.95960 -13.63227 -13.31980 -13.07719 -12.75857 -12.71414 -12.51062 -12.27254 -12.13550 -11.99740 -11.73090 -11.61416 -10.96969 -10.94675 -10.80475 -10.62252 -10.56079 -10.41626 -10.10493 -9.67505 -9.40691 -9.30730 -9.18396 -8.64096 -7.85840 -7.50947 -7.28942 -4.83782 1.28023 2.27635 2.48740 2.57022 3.30371 3.54840 3.60663 3.67206 3.97966 4.06926 4.11738 4.24661 4.37020 4.42309 4.46649 4.59880 4.63179 5.00366 5.15998 5.24258 5.34965 5.37948 5.41900 5.45911 5.49604 5.52043 5.65301 5.70133 5.74799 5.91101 5.94727 6.02821 6.07361 6.31753 6.36908 6.44055 6.86690 7.00447 7.10909 7.36915 7.42517 7.48201 7.65052 7.73201 8.01514 8.09060 8.28386 8.57976 9.31512 9.96294 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024723 B = 0.002892 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.255832 B = 9680.273621 C =10527.040776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.101 4.101 3 C 0.133 3.867 4 N -0.699 5.699 5 C 0.511 3.489 6 O -0.515 6.515 7 C 0.508 3.492 8 O -0.496 6.496 9 N -0.623 5.623 10 C 0.383 3.617 11 C -0.310 4.310 12 C -0.034 4.034 13 C -0.271 4.271 14 C 0.272 3.728 15 C -0.472 4.472 16 H 0.085 0.915 17 C 0.043 3.957 18 N -0.802 5.802 19 Si 1.154 2.846 20 H -0.330 1.330 21 H -0.283 1.283 22 H -0.293 1.293 23 N -0.595 5.595 24 C -0.134 4.134 25 C -0.141 4.141 26 C -0.126 4.126 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.413 0.587 33 H 0.420 0.580 34 H 0.139 0.861 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.284 0.716 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.885 -23.728 -6.621 24.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.101 4.101 3 C 0.010 3.990 4 N -0.354 5.354 5 C 0.291 3.709 6 O -0.390 6.390 7 C 0.289 3.711 8 O -0.370 6.370 9 N -0.269 5.269 10 C 0.152 3.848 11 C -0.334 4.334 12 C -0.058 4.058 13 C -0.293 4.293 14 C 0.148 3.852 15 C -0.504 4.504 16 H 0.103 0.897 17 C -0.178 4.178 18 N -0.424 5.424 19 Si 0.989 3.011 20 H -0.263 1.263 21 H -0.211 1.211 22 H -0.222 1.222 23 N -0.320 5.320 24 C -0.171 4.171 25 C -0.178 4.178 26 C -0.164 4.164 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.251 0.749 33 H 0.258 0.742 34 H 0.156 0.844 35 H 0.126 0.874 36 H 0.125 0.875 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.090 0.910 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.863 -23.111 -8.745 24.781 hybrid contribution -1.081 -0.229 2.457 2.694 sum 0.782 -23.340 -6.288 24.185 Atomic orbital electron populations 1.21623 0.92416 1.02376 1.02575 1.22147 0.96398 0.92857 0.98700 1.21482 0.97061 0.89333 0.91128 1.45773 1.41376 1.10818 1.37436 1.20031 0.83376 0.83048 0.84396 1.90787 1.30618 1.71330 1.46274 1.19959 0.83487 0.82764 0.84919 1.90687 1.29509 1.71315 1.45498 1.42945 1.43961 1.10780 1.29262 1.18025 0.92886 0.88356 0.85506 1.21468 1.14631 1.00913 0.96429 1.20918 0.95035 0.93761 0.96133 1.21647 1.11518 0.94271 1.01861 1.18281 0.87218 0.93163 0.86533 1.20752 1.37800 0.90168 1.01643 0.89687 1.27789 0.90120 0.96435 1.03480 1.70645 1.30683 1.06293 1.34748 0.81834 0.78282 0.70795 0.70177 1.26335 1.21069 1.22151 1.65960 1.30552 1.04246 1.31260 1.23072 1.01387 0.95888 0.96752 1.22802 1.02208 0.96355 0.96469 1.22948 1.01350 0.95540 0.96545 0.91791 0.91791 0.91974 0.90727 0.90670 0.74910 0.74248 0.84411 0.87358 0.87450 0.90503 0.89760 0.91082 0.90095 0.91337 0.91009 0.89667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.84 8.90 37.16 0.33 -0.51 16 2 C -0.10 -0.66 1.09 -153.70 -0.17 -0.82 16 3 C 0.13 1.16 5.15 -4.04 -0.02 1.14 16 4 N -0.70 -7.57 5.27 -60.76 -0.32 -7.89 16 5 C 0.51 7.43 7.89 -11.63 -0.09 7.34 16 6 O -0.51 -8.51 16.48 5.49 0.09 -8.42 16 7 C 0.51 8.74 7.73 -11.62 -0.09 8.65 16 8 O -0.50 -8.97 13.27 5.49 0.07 -8.89 16 9 N -0.62 -12.34 5.39 -11.83 -0.06 -12.40 16 10 C 0.38 8.84 7.50 -155.09 -1.16 7.68 16 11 C -0.31 -6.78 8.83 -38.88 -0.34 -7.13 16 12 C -0.03 -0.73 10.15 -39.39 -0.40 -1.13 16 13 C -0.27 -6.33 9.83 -38.65 -0.38 -6.71 16 14 C 0.27 7.11 6.39 -85.00 -0.54 6.57 16 15 C -0.47 -12.79 9.58 -37.73 -0.36 -13.15 16 16 H 0.09 2.28 8.05 -52.49 -0.42 1.86 16 17 C 0.04 1.18 5.52 -17.34 -0.10 1.09 16 18 N -0.80 -21.84 13.65 55.55 0.76 -21.08 16 19 Si 1.15 28.65 25.53 -169.99 -4.34 24.31 16 20 H -0.33 -8.10 7.11 56.52 0.40 -7.70 16 21 H -0.28 -6.85 6.70 56.52 0.38 -6.47 16 22 H -0.29 -7.37 7.10 56.52 0.40 -6.97 16 23 N -0.59 -15.22 4.58 -10.28 -0.05 -15.26 16 24 C -0.13 -0.83 7.21 -25.92 -0.19 -1.02 16 25 C -0.14 -0.74 7.73 -25.92 -0.20 -0.95 16 26 C -0.13 -0.70 7.23 -25.92 -0.19 -0.89 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.35 7.34 -51.93 -0.38 -0.03 16 29 H 0.06 0.43 6.28 -51.93 -0.33 0.10 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.67 7.94 -51.93 -0.41 0.26 16 32 H 0.41 4.04 6.21 -40.82 -0.25 3.79 16 33 H 0.42 7.99 8.31 -40.82 -0.34 7.65 16 34 H 0.14 2.86 5.33 -52.50 -0.28 2.58 16 35 H 0.11 1.93 8.06 -52.49 -0.42 1.50 16 36 H 0.11 2.32 8.06 -52.48 -0.42 1.90 16 37 H 0.28 7.35 8.72 -40.82 -0.36 7.00 16 38 H 0.08 0.54 7.96 -51.93 -0.41 0.13 16 39 H 0.07 0.44 8.10 -51.93 -0.42 0.02 16 40 H 0.08 0.39 7.64 -51.93 -0.40 0.00 16 41 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.07 0.37 8.10 -51.93 -0.42 -0.05 16 43 H 0.08 0.45 8.10 -51.93 -0.42 0.03 16 LS Contribution 354.47 15.07 5.34 5.34 Total: -1.00 -30.18 354.47 -8.19 -38.37 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -5.78 Total: 5.76 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -3.90 Total: 0.17 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: 0.33 Total: -56.63 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: 0.16 Total: -17.31 kcal Atomic # 14 Polarization: 28.65 SS G_CDS: -4.34 Total: 24.31 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.18 -8.19 -38.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890000232.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.576 kcal (2) G-P(sol) polarization free energy of solvation -30.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds