Wall clock time and date at job start Tue Mar 31 2020 11:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52994 * 112.85047 * 2 1 4 4 N 1.46501 * 109.47442 * 48.80526 * 3 2 1 5 5 C 1.34771 * 120.00393 * 180.02562 * 4 3 2 6 6 O 1.21358 * 119.99996 * 359.97438 * 5 4 3 7 7 C 1.49363 * 120.00148 * 179.97438 * 5 4 3 8 8 O 1.21358 * 119.99856 * 0.02562 * 7 5 4 9 9 N 1.34780 * 120.00031 * 179.97438 * 7 5 4 10 10 C 1.39113 * 119.99933 * 185.60600 * 9 7 5 11 11 C 1.39710 * 119.58041 * 18.95861 * 10 9 7 12 12 C 1.38647 * 119.49800 * 179.97438 * 11 10 9 13 13 C 1.38348 * 118.66813 * 359.74842 * 12 11 10 14 14 C 1.40591 * 119.13811 * 0.49431 * 13 12 11 15 15 C 1.41334 * 119.78860 * 179.76904 * 14 13 12 16 16 H 1.08000 * 120.00121 * 7.00120 * 15 14 13 17 17 C 1.40032 * 120.00118 * 187.00125 * 15 14 13 18 18 N 1.30744 * 119.99960 * 181.90605 * 17 15 14 19 19 Si 1.86799 * 119.99820 * 1.90781 * 17 15 14 20 20 H 1.48506 * 109.47180 * 179.97438 * 19 17 15 21 21 H 1.48500 * 109.47191 * 299.99672 * 19 17 15 22 22 H 1.48495 * 109.47229 * 60.00049 * 19 17 15 23 23 N 1.31930 * 119.58070 * 198.93132 * 10 9 7 24 24 C 1.53783 * 113.68870 * 131.26918 * 2 1 3 25 25 C 1.53778 * 87.08297 * 89.12617 * 24 2 1 26 26 C 1.53783 * 87.08180 * 25.43140 * 25 24 2 27 27 H 1.09001 * 109.46838 * 69.66615 * 1 2 3 28 28 H 1.09003 * 109.47732 * 189.66605 * 1 2 3 29 29 H 1.08996 * 109.47549 * 309.66965 * 1 2 3 30 30 H 1.08996 * 109.47172 * 288.79995 * 3 2 1 31 31 H 1.09003 * 109.47373 * 168.80049 * 3 2 1 32 32 H 0.97004 * 119.99799 * 359.97438 * 4 3 2 33 33 H 0.96992 * 120.00038 * 5.61525 * 9 7 5 34 34 H 1.08008 * 120.25321 * 359.95096 * 11 10 9 35 35 H 1.07999 * 120.66623 * 180.02562 * 12 11 10 36 36 H 1.08005 * 120.42985 * 180.24016 * 13 12 11 37 37 H 0.97002 * 120.00138 * 354.83241 * 18 17 15 38 38 H 1.09004 * 113.61309 * 203.67668 * 24 2 1 39 39 H 1.09002 * 113.61468 * 334.57766 * 24 2 1 40 40 H 1.08996 * 113.61389 * 270.88279 * 25 24 2 41 41 H 1.09005 * 113.68968 * 139.99003 * 25 24 2 42 42 H 1.09001 * 113.61696 * 220.01854 * 26 25 24 43 43 H 1.08998 * 113.61411 * 89.11252 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 7 1.4754 2.2132 1.0393 5 6 1.8402 3.4974 1.2243 6 8 2.7062 3.9882 0.5302 7 6 1.1784 4.3165 2.2836 8 8 0.3127 3.8256 2.9780 9 7 1.5435 5.6006 2.4689 10 6 1.0126 6.3287 3.5287 11 6 0.4348 5.6547 4.6075 12 6 -0.0933 6.3820 5.6632 13 6 -0.0262 7.7631 5.6169 14 6 0.5632 8.3828 4.5011 15 6 0.6346 9.7929 4.4373 16 1 0.3417 10.3876 5.2900 17 6 1.0852 10.4191 3.2687 18 7 1.1867 11.7217 3.2224 19 14 1.5413 9.3931 1.7758 20 1 1.9844 10.2880 0.6766 21 1 2.6429 8.4631 2.1320 22 1 0.3587 8.6126 1.3315 23 7 1.0616 7.6468 3.5026 24 6 2.1478 -0.9289 1.0585 25 6 2.0949 -2.0420 -0.0012 26 6 2.1460 -0.9281 -1.0602 27 1 -0.3633 0.3571 -0.9636 28 1 -0.3635 -1.0131 0.1725 29 1 -0.3634 0.6560 0.7910 30 1 1.9600 1.8733 -0.9728 31 1 3.1942 1.3533 0.1996 32 1 0.7829 1.8210 1.5939 33 1 2.1763 6.0172 1.8632 34 1 0.3995 4.5753 4.6189 35 1 -0.5440 5.8804 6.5068 36 1 -0.4252 8.3575 6.4256 37 1 0.8797 12.2590 3.9694 38 1 3.1609 -0.6487 1.3473 39 1 1.4972 -1.1094 1.9142 40 1 1.1594 -2.6013 -0.0006 41 1 2.9737 -2.6869 -0.0032 42 1 1.4939 -1.1080 -1.9150 43 1 3.1585 -0.6478 -1.3506 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890000232.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:53 Heat of formation + Delta-G solvation = -41.411048 kcal Electronic energy + Delta-G solvation = -25894.092045 eV Core-core repulsion = 22131.836264 eV Total energy + Delta-G solvation = -3762.255781 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.30166 -41.03046 -40.24039 -39.39769 -36.70153 -35.75001 -35.25926 -33.05746 -31.57941 -30.73163 -28.56838 -27.42632 -26.59100 -26.04675 -23.78552 -23.53656 -22.59032 -21.48586 -20.61908 -19.95801 -19.07185 -18.48828 -17.86006 -17.32339 -16.99751 -16.96475 -16.48086 -16.05841 -15.92603 -15.62914 -15.44690 -15.05296 -14.93804 -14.68034 -14.47192 -14.27462 -13.99759 -13.75769 -13.35668 -13.18228 -13.00200 -12.81023 -12.72166 -12.34435 -12.31182 -12.09025 -11.87749 -11.64587 -11.41701 -11.21630 -11.16767 -11.06598 -10.70441 -10.46048 -10.34808 -9.80393 -9.33143 -9.29956 -6.85283 -0.10286 0.66380 0.79199 1.03846 1.55662 1.65523 1.95471 2.00340 2.38251 2.39474 2.63120 3.18524 3.51170 3.54724 3.59737 3.75340 3.99358 4.00560 4.07146 4.29847 4.45428 4.56104 4.59466 4.65436 4.66187 4.71782 4.81667 4.86674 4.93914 4.98682 5.05487 5.12496 5.20150 5.22886 5.25769 5.30947 5.37446 5.44248 5.60274 5.60982 5.65351 5.84625 5.95097 6.17321 6.32856 6.50265 6.63370 6.75123 7.42507 7.93357 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024723 B = 0.002892 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.255832 B = 9680.273621 C =10527.040776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.098 4.098 3 C 0.130 3.870 4 N -0.677 5.677 5 C 0.519 3.481 6 O -0.537 6.537 7 C 0.512 3.488 8 O -0.502 6.502 9 N -0.631 5.631 10 C 0.368 3.632 11 C -0.299 4.299 12 C -0.024 4.024 13 C -0.282 4.282 14 C 0.256 3.744 15 C -0.503 4.503 16 H 0.074 0.926 17 C 0.017 3.983 18 N -0.827 5.827 19 Si 1.183 2.817 20 H -0.329 1.329 21 H -0.278 1.278 22 H -0.301 1.301 23 N -0.613 5.613 24 C -0.136 4.136 25 C -0.136 4.136 26 C -0.123 4.123 27 H 0.063 0.937 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.420 0.580 33 H 0.422 0.578 34 H 0.156 0.844 35 H 0.152 0.848 36 H 0.120 0.880 37 H 0.283 0.717 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.575 -27.201 -6.761 28.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.098 4.098 3 C 0.008 3.992 4 N -0.331 5.331 5 C 0.298 3.702 6 O -0.414 6.414 7 C 0.294 3.706 8 O -0.376 6.376 9 N -0.277 5.277 10 C 0.138 3.862 11 C -0.324 4.324 12 C -0.048 4.048 13 C -0.304 4.304 14 C 0.131 3.869 15 C -0.536 4.536 16 H 0.092 0.908 17 C -0.200 4.200 18 N -0.450 5.450 19 Si 1.017 2.983 20 H -0.262 1.262 21 H -0.206 1.206 22 H -0.230 1.230 23 N -0.339 5.339 24 C -0.174 4.174 25 C -0.174 4.174 26 C -0.161 4.161 27 H 0.082 0.918 28 H 0.093 0.907 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.259 0.741 33 H 0.260 0.740 34 H 0.173 0.827 35 H 0.170 0.830 36 H 0.138 0.862 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.106 0.894 41 H 0.091 0.909 42 H 0.096 0.904 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.544 -26.651 -8.887 28.136 hybrid contribution -1.046 0.546 2.558 2.817 sum 0.498 -26.105 -6.330 26.866 Atomic orbital electron populations 1.21638 0.92092 1.02964 1.02348 1.22157 0.96581 0.91406 0.99670 1.21703 0.97173 0.90178 0.90173 1.45788 1.40675 1.09451 1.37233 1.19527 0.83205 0.83811 0.83676 1.90793 1.31715 1.71924 1.46965 1.20447 0.83010 0.81983 0.85130 1.90656 1.29728 1.71244 1.45974 1.43027 1.44256 1.11563 1.28874 1.18387 0.93034 0.87945 0.86845 1.21870 1.12846 1.01861 0.95780 1.21381 0.93578 0.92883 0.96966 1.21846 1.11522 0.95586 1.01482 1.18490 0.87550 0.93096 0.87751 1.20734 1.40215 0.91018 1.01653 0.90773 1.28373 0.90103 0.96804 1.04714 1.70654 1.32743 1.06515 1.35102 0.81426 0.77897 0.70045 0.68937 1.26238 1.20579 1.22960 1.65877 1.30971 1.05582 1.31511 1.23095 1.01168 0.96191 0.96904 1.22794 1.02806 0.96129 0.95628 1.22964 1.01510 0.95092 0.96568 0.91773 0.90660 0.92618 0.90839 0.90556 0.74059 0.74022 0.82711 0.83011 0.86154 0.90605 0.90073 0.91034 0.89435 0.90874 0.90416 0.89455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.35 8.90 71.98 0.64 -0.71 16 2 C -0.10 -1.04 1.09 -51.66 -0.06 -1.10 16 3 C 0.13 2.00 5.15 86.38 0.44 2.45 16 4 N -0.68 -13.21 5.27 -464.51 -2.45 -15.65 16 5 C 0.52 14.15 7.89 87.24 0.69 14.84 16 6 O -0.54 -17.02 16.48 -3.27 -0.05 -17.08 16 7 C 0.51 16.67 7.73 87.24 0.67 17.34 16 8 O -0.50 -16.84 13.27 -3.27 -0.04 -16.88 16 9 N -0.63 -24.16 5.39 -309.71 -1.67 -25.83 16 10 C 0.37 16.49 7.50 133.31 1.00 17.49 16 11 C -0.30 -12.27 8.83 22.72 0.20 -12.07 16 12 C -0.02 -0.94 10.15 22.39 0.23 -0.72 16 13 C -0.28 -12.79 9.83 22.87 0.22 -12.57 16 14 C 0.26 13.40 6.39 40.20 0.26 13.66 16 15 C -0.50 -27.99 9.58 23.47 0.22 -27.77 16 16 H 0.07 4.13 8.05 -2.91 -0.02 4.11 16 17 C 0.02 0.97 5.52 85.29 0.47 1.44 16 18 N -0.83 -46.32 13.65 21.84 0.30 -46.02 16 19 Si 1.18 59.06 25.53 68.60 1.75 60.81 16 20 H -0.33 -16.10 7.11 99.48 0.71 -15.39 16 21 H -0.28 -13.45 6.70 99.48 0.67 -12.78 16 22 H -0.30 -15.18 7.10 99.48 0.71 -14.47 16 23 N -0.61 -31.14 4.58 -186.43 -0.85 -32.00 16 24 C -0.14 -1.36 7.21 31.12 0.22 -1.14 16 25 C -0.14 -1.08 7.73 31.12 0.24 -0.84 16 26 C -0.12 -1.06 7.23 31.12 0.23 -0.84 16 27 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.07 0.61 7.34 -2.39 -0.02 0.59 16 29 H 0.05 0.63 6.28 -2.39 -0.02 0.62 16 30 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.08 1.22 7.94 -2.39 -0.02 1.20 16 32 H 0.42 7.18 6.21 -92.70 -0.58 6.60 16 33 H 0.42 15.76 8.31 -92.71 -0.77 14.99 16 34 H 0.16 5.86 5.33 -3.16 -0.02 5.84 16 35 H 0.15 4.64 8.06 -2.91 -0.02 4.61 16 36 H 0.12 5.05 8.06 -2.91 -0.02 5.03 16 37 H 0.28 15.23 8.72 -92.71 -0.81 14.43 16 38 H 0.08 0.88 7.96 -2.38 -0.02 0.86 16 39 H 0.07 0.72 8.10 -2.39 -0.02 0.70 16 40 H 0.09 0.60 7.64 -2.39 -0.02 0.58 16 41 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 42 H 0.08 0.60 8.10 -2.39 -0.02 0.58 16 43 H 0.09 0.73 8.10 -2.39 -0.02 0.71 16 Total: -1.00 -64.35 354.47 2.30 -62.05 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: -0.37 Total: 21.13 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: 5.69 Total: 9.47 kcal Atomic # 7 Polarization: -114.83 SS G_CDS: -4.68 Total: -119.50 kcal Atomic # 8 Polarization: -33.86 SS G_CDS: -0.10 Total: -33.96 kcal Atomic # 14 Polarization: 59.06 SS G_CDS: 1.75 Total: 60.81 kcal Total: -64.35 2.30 -62.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890000232.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.644 kcal (2) G-P(sol) polarization free energy of solvation -64.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds