Wall clock time and date at job start Tue Mar 31 2020 11:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52994 * 112.85333 * 2 1 4 4 C 1.53784 * 113.61349 * 131.19743 * 2 1 3 5 5 C 1.53778 * 87.08381 * 139.97854 * 4 2 1 6 6 C 1.53784 * 113.61266 * 228.80080 * 2 1 3 7 7 H 1.08995 * 113.61512 * 334.57177 * 6 2 1 8 8 N 1.46502 * 113.61216 * 105.47417 * 6 2 1 9 9 C 1.34782 * 119.99824 * 204.99878 * 8 6 2 10 10 O 1.21359 * 119.99834 * 0.02562 * 9 8 6 11 11 C 1.49363 * 120.00017 * 179.97438 * 9 8 6 12 12 O 1.21365 * 119.99892 * 0.02562 * 11 9 8 13 13 N 1.34775 * 120.00133 * 180.02562 * 11 9 8 14 14 C 1.39108 * 119.99923 * 174.85281 * 13 11 9 15 15 C 1.39713 * 119.57736 * 185.30997 * 14 13 11 16 16 C 1.38648 * 119.49556 * 179.97438 * 15 14 13 17 17 C 1.38348 * 118.67217 * 0.02562 * 16 15 14 18 18 C 1.40601 * 119.13353 * 359.97438 * 17 16 15 19 19 C 1.41339 * 119.78381 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00100 * 359.97438 * 19 18 17 21 21 C 1.40030 * 119.99830 * 180.02562 * 19 18 17 22 22 N 1.30744 * 119.99830 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99842 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47308 * 359.97438 * 23 21 19 25 25 H 1.48507 * 109.46800 * 119.99872 * 23 21 19 26 26 H 1.48497 * 109.47162 * 239.99585 * 23 21 19 27 27 N 1.31941 * 119.58156 * 5.03144 * 14 13 11 28 28 H 1.09006 * 109.47287 * 69.66855 * 1 2 3 29 29 H 1.09005 * 109.47480 * 309.66950 * 1 2 3 30 30 H 1.09003 * 109.47803 * 189.66861 * 1 2 3 31 31 H 1.09002 * 109.46888 * 50.33143 * 3 2 1 32 32 H 1.08997 * 109.47592 * 170.33456 * 3 2 1 33 33 H 1.09001 * 109.47218 * 290.33476 * 3 2 1 34 34 H 1.09005 * 113.61377 * 254.53143 * 4 2 1 35 35 H 1.09002 * 113.61327 * 25.34542 * 4 2 1 36 36 H 1.09002 * 113.61262 * 89.11384 * 5 4 2 37 37 H 1.09000 * 113.61785 * 220.01920 * 5 4 2 38 38 H 0.96995 * 120.00199 * 24.99915 * 8 6 2 39 39 H 0.97003 * 119.99799 * 354.84759 * 13 11 9 40 40 H 1.08002 * 120.25395 * 359.95349 * 15 14 13 41 41 H 1.08001 * 120.66684 * 180.02562 * 16 15 14 42 42 H 1.08000 * 120.43569 * 179.97438 * 17 16 15 43 43 H 0.97002 * 119.99264 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1241 1.4098 0.0000 4 6 2.1459 -0.9281 1.0603 5 6 3.1922 -1.3137 0.0013 6 6 2.1459 -0.9281 -1.0602 7 1 1.4944 -1.7523 -1.3506 8 7 2.7091 -0.2144 -2.2090 9 6 2.8173 -0.8346 -3.4007 10 8 2.4477 -1.9841 -3.5222 11 6 3.3909 -0.1068 -4.5721 12 8 3.7601 1.0430 -4.4506 13 7 3.4986 -0.7268 -5.7639 14 6 3.9322 -0.0183 -6.8798 15 6 3.9346 -0.6380 -8.1320 16 6 4.3666 0.0698 -9.2431 17 6 4.7854 1.3777 -9.0754 18 6 4.7592 1.9452 -7.7893 19 6 5.1835 3.2804 -7.6023 20 1 5.5267 3.8611 -8.4458 21 6 5.1599 3.8499 -6.3233 22 7 4.7449 3.1468 -5.3022 23 14 5.7213 5.6144 -6.0761 24 1 6.1408 6.1877 -7.3801 25 1 4.6023 6.4164 -5.5192 26 1 6.8674 5.6415 -5.1323 27 7 4.3306 1.2320 -6.7431 28 1 -0.3634 0.3571 -0.9637 29 1 -0.3634 0.6560 0.7910 30 1 -0.3635 -1.0131 0.1726 31 1 1.6607 1.9994 0.7911 32 1 3.1987 1.3513 0.1725 33 1 1.9361 1.8834 -0.9636 34 1 2.5649 -0.3970 1.9150 35 1 1.4938 -1.7514 1.3517 36 1 4.0710 -0.6688 0.0007 37 1 3.4442 -2.3742 0.0023 38 1 3.0042 0.7045 -2.1119 39 1 3.2738 -1.6670 -5.8435 40 1 3.6029 -1.6608 -8.2336 41 1 4.3760 -0.3905 -10.2201 42 1 5.1279 1.9552 -9.9213 43 1 4.7282 3.5415 -4.4163 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890284341.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:56 Heat of formation + Delta-G solvation = 4.587926 kcal Electronic energy + Delta-G solvation = -26625.748797 eV Core-core repulsion = 22865.487681 eV Total energy + Delta-G solvation = -3760.261116 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.71007 -39.55179 -38.27586 -37.12549 -34.48908 -33.45623 -32.88586 -30.82643 -30.38198 -29.21577 -27.70399 -26.25996 -25.52521 -23.62808 -22.63796 -21.62475 -20.99408 -19.69362 -18.84292 -18.00502 -17.08040 -16.72671 -15.99558 -15.50144 -15.32780 -15.00716 -14.70155 -14.48437 -14.30625 -13.79590 -13.55847 -13.46474 -13.33436 -12.94856 -12.82738 -12.46655 -12.34220 -12.09156 -12.00834 -11.85324 -11.67441 -11.22435 -11.10453 -10.99428 -10.89194 -10.67679 -10.52776 -10.47536 -10.45318 -9.95907 -9.80622 -9.10082 -9.00354 -8.96310 -8.03539 -7.33070 -7.05688 -6.22410 -4.45436 1.92535 2.80629 2.84444 3.08428 3.13600 3.17172 3.22576 3.95397 4.01240 4.11236 4.15719 4.35447 4.56300 4.68123 4.86522 4.97804 5.00502 5.28478 5.37544 5.43116 5.52493 5.56806 5.65511 5.76564 5.77915 5.84660 5.94894 5.96762 6.06590 6.14083 6.19569 6.42390 6.48451 6.58182 6.75489 6.79541 7.15377 7.31977 7.51140 7.53427 7.76225 7.91351 8.05651 8.19153 8.37292 8.63156 8.93747 9.01818 10.14485 10.40914 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013436 B = 0.004058 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.478391 B = 6898.668380 C = 8615.940551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.093 4.093 3 C -0.138 4.138 4 C -0.130 4.130 5 C -0.153 4.153 6 C 0.128 3.872 7 H 0.116 0.884 8 N -0.694 5.694 9 C 0.509 3.491 10 O -0.536 6.536 11 C 0.465 3.535 12 O -0.388 6.388 13 N -0.639 5.639 14 C 0.368 3.632 15 C -0.349 4.349 16 C -0.036 4.036 17 C -0.301 4.301 18 C 0.271 3.729 19 C -0.424 4.424 20 H 0.084 0.916 21 C 0.059 3.941 22 N -0.662 5.662 23 Si 0.897 3.103 24 H -0.262 1.262 25 H -0.275 1.275 26 H -0.275 1.275 27 N -0.474 5.474 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.072 0.928 38 H 0.414 0.586 39 H 0.411 0.589 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.329 -5.011 12.770 14.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.093 4.093 3 C -0.195 4.195 4 C -0.168 4.168 5 C -0.191 4.191 6 C 0.023 3.977 7 H 0.134 0.866 8 N -0.348 5.348 9 C 0.291 3.709 10 O -0.412 6.412 11 C 0.242 3.758 12 O -0.250 6.250 13 N -0.287 5.287 14 C 0.130 3.870 15 C -0.374 4.374 16 C -0.060 4.060 17 C -0.324 4.324 18 C 0.146 3.854 19 C -0.455 4.455 20 H 0.102 0.898 21 C -0.169 4.169 22 N -0.281 5.281 23 Si 0.722 3.278 24 H -0.186 1.186 25 H -0.200 1.200 26 H -0.200 1.200 27 N -0.194 5.194 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.091 0.909 38 H 0.252 0.748 39 H 0.247 0.753 40 H 0.113 0.887 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.384 -4.507 13.889 15.563 hybrid contribution 0.232 0.163 -0.719 0.773 sum -5.152 -4.344 13.171 14.794 Atomic orbital electron populations 1.21749 0.93682 1.01876 1.02142 1.22265 0.95861 0.95500 0.95718 1.21628 1.00938 0.94230 1.02685 1.22896 0.98184 0.99142 0.96568 1.23428 0.97862 1.02182 0.95653 1.22767 0.95846 0.95728 0.83350 0.86624 1.45802 1.62457 1.17826 1.08727 1.20866 0.78690 0.86673 0.84688 1.90682 1.48501 1.17442 1.84620 1.20168 0.83276 0.88342 0.84042 1.91207 1.38794 1.13572 1.81449 1.43001 1.65008 1.13768 1.06956 1.18556 0.93420 0.91274 0.83741 1.20519 1.23335 1.00967 0.92617 1.20584 0.95277 0.94053 0.96115 1.21655 1.15806 0.96571 0.98359 1.18377 0.88291 0.92820 0.85916 1.19626 1.36040 0.95511 0.94282 0.89807 1.26165 0.95199 0.99176 0.96364 1.70325 1.24429 1.34116 0.99240 0.86437 0.78940 0.83063 0.79398 1.18558 1.20033 1.20042 1.68651 1.16972 1.02452 1.31278 0.92259 0.92336 0.92378 0.91783 0.91906 0.91577 0.90786 0.89792 0.89528 0.90890 0.74777 0.75327 0.88727 0.88368 0.88380 0.91766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.18 37.15 0.34 -0.84 16 2 C -0.09 -0.85 1.36 -153.70 -0.21 -1.06 16 3 C -0.14 -1.26 7.99 37.15 0.30 -0.96 16 4 C -0.13 -1.04 7.21 -25.92 -0.19 -1.23 16 5 C -0.15 -1.50 7.54 -25.83 -0.19 -1.69 16 6 C 0.13 1.47 3.70 -67.02 -0.25 1.23 16 7 H 0.12 1.44 7.42 -51.93 -0.39 1.05 16 8 N -0.69 -9.84 5.23 -53.38 -0.28 -10.12 16 9 C 0.51 8.86 7.89 -11.62 -0.09 8.77 16 10 O -0.54 -9.85 16.08 5.49 0.09 -9.76 16 11 C 0.47 9.68 7.84 -11.63 -0.09 9.59 16 12 O -0.39 -9.22 12.24 5.48 0.07 -9.15 16 13 N -0.64 -13.41 5.37 -11.83 -0.06 -13.48 16 14 C 0.37 9.05 7.42 -155.09 -1.15 7.90 16 15 C -0.35 -7.89 9.95 -38.88 -0.39 -8.28 16 16 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 17 C -0.30 -7.46 9.83 -38.65 -0.38 -7.84 16 18 C 0.27 7.49 6.55 -85.00 -0.56 6.93 16 19 C -0.42 -11.39 9.14 -37.73 -0.34 -11.74 16 20 H 0.08 2.11 7.85 -52.49 -0.41 1.70 16 21 C 0.06 1.52 5.50 -17.34 -0.10 1.42 16 22 N -0.66 -17.53 8.99 55.55 0.50 -17.03 16 23 Si 0.90 18.65 29.56 -169.99 -5.02 13.62 16 24 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 25 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 26 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 27 N -0.47 -13.10 5.73 -10.27 -0.06 -13.16 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.46 7.98 -51.93 -0.41 0.04 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.56 7.34 -51.93 -0.38 0.18 16 33 H 0.07 0.68 7.20 -51.93 -0.37 0.31 16 34 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 35 H 0.08 0.60 7.99 -51.93 -0.41 0.18 16 36 H 0.09 0.87 7.64 -51.93 -0.40 0.47 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.41 5.78 6.17 -40.82 -0.25 5.52 16 39 H 0.41 7.42 8.18 -40.82 -0.33 7.09 16 40 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 41 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 42 H 0.10 2.25 8.06 -52.49 -0.42 1.82 16 43 H 0.27 6.59 8.29 -40.82 -0.34 6.26 16 LS Contribution 356.66 15.07 5.37 5.37 Total: -1.00 -31.02 356.66 -8.97 -39.99 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -5.88 Total: 12.74 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -3.70 Total: 0.97 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: 0.10 Total: -53.78 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: 0.16 Total: -18.91 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.02 Total: 13.62 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.02 -8.97 -39.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890284341.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.577 kcal (2) G-P(sol) polarization free energy of solvation -31.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds