Wall clock time and date at job start Tue Mar 31 2020 11:42:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52994 * 112.85333 * 2 1 4 4 C 1.53784 * 113.61349 * 131.19743 * 2 1 3 5 5 C 1.53778 * 87.08381 * 139.97854 * 4 2 1 6 6 C 1.53784 * 113.61266 * 228.80080 * 2 1 3 7 7 H 1.08995 * 113.61512 * 334.57177 * 6 2 1 8 8 N 1.46502 * 113.61216 * 105.47417 * 6 2 1 9 9 C 1.34782 * 119.99824 * 204.99878 * 8 6 2 10 10 O 1.21359 * 119.99834 * 0.02562 * 9 8 6 11 11 C 1.49363 * 120.00017 * 179.97438 * 9 8 6 12 12 O 1.21365 * 119.99892 * 0.02562 * 11 9 8 13 13 N 1.34775 * 120.00133 * 180.02562 * 11 9 8 14 14 C 1.39108 * 119.99923 * 174.85281 * 13 11 9 15 15 C 1.39713 * 119.57736 * 185.30997 * 14 13 11 16 16 C 1.38648 * 119.49556 * 179.97438 * 15 14 13 17 17 C 1.38348 * 118.67217 * 0.02562 * 16 15 14 18 18 C 1.40601 * 119.13353 * 359.97438 * 17 16 15 19 19 C 1.41339 * 119.78381 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00100 * 359.97438 * 19 18 17 21 21 C 1.40030 * 119.99830 * 180.02562 * 19 18 17 22 22 N 1.30744 * 119.99830 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99842 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47308 * 359.97438 * 23 21 19 25 25 H 1.48507 * 109.46800 * 119.99872 * 23 21 19 26 26 H 1.48497 * 109.47162 * 239.99585 * 23 21 19 27 27 N 1.31941 * 119.58156 * 5.03144 * 14 13 11 28 28 H 1.09006 * 109.47287 * 69.66855 * 1 2 3 29 29 H 1.09005 * 109.47480 * 309.66950 * 1 2 3 30 30 H 1.09003 * 109.47803 * 189.66861 * 1 2 3 31 31 H 1.09002 * 109.46888 * 50.33143 * 3 2 1 32 32 H 1.08997 * 109.47592 * 170.33456 * 3 2 1 33 33 H 1.09001 * 109.47218 * 290.33476 * 3 2 1 34 34 H 1.09005 * 113.61377 * 254.53143 * 4 2 1 35 35 H 1.09002 * 113.61327 * 25.34542 * 4 2 1 36 36 H 1.09002 * 113.61262 * 89.11384 * 5 4 2 37 37 H 1.09000 * 113.61785 * 220.01920 * 5 4 2 38 38 H 0.96995 * 120.00199 * 24.99915 * 8 6 2 39 39 H 0.97003 * 119.99799 * 354.84759 * 13 11 9 40 40 H 1.08002 * 120.25395 * 359.95349 * 15 14 13 41 41 H 1.08001 * 120.66684 * 180.02562 * 16 15 14 42 42 H 1.08000 * 120.43569 * 179.97438 * 17 16 15 43 43 H 0.97002 * 119.99264 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1241 1.4098 0.0000 4 6 2.1459 -0.9281 1.0603 5 6 3.1922 -1.3137 0.0013 6 6 2.1459 -0.9281 -1.0602 7 1 1.4944 -1.7523 -1.3506 8 7 2.7091 -0.2144 -2.2090 9 6 2.8173 -0.8346 -3.4007 10 8 2.4477 -1.9841 -3.5222 11 6 3.3909 -0.1068 -4.5721 12 8 3.7601 1.0430 -4.4506 13 7 3.4986 -0.7268 -5.7639 14 6 3.9322 -0.0183 -6.8798 15 6 3.9346 -0.6380 -8.1320 16 6 4.3666 0.0698 -9.2431 17 6 4.7854 1.3777 -9.0754 18 6 4.7592 1.9452 -7.7893 19 6 5.1835 3.2804 -7.6023 20 1 5.5267 3.8611 -8.4458 21 6 5.1599 3.8499 -6.3233 22 7 4.7449 3.1468 -5.3022 23 14 5.7213 5.6144 -6.0761 24 1 6.1408 6.1877 -7.3801 25 1 4.6023 6.4164 -5.5192 26 1 6.8674 5.6415 -5.1323 27 7 4.3306 1.2320 -6.7431 28 1 -0.3634 0.3571 -0.9637 29 1 -0.3634 0.6560 0.7910 30 1 -0.3635 -1.0131 0.1726 31 1 1.6607 1.9994 0.7911 32 1 3.1987 1.3513 0.1725 33 1 1.9361 1.8834 -0.9636 34 1 2.5649 -0.3970 1.9150 35 1 1.4938 -1.7514 1.3517 36 1 4.0710 -0.6688 0.0007 37 1 3.4442 -2.3742 0.0023 38 1 3.0042 0.7045 -2.1119 39 1 3.2738 -1.6670 -5.8435 40 1 3.6029 -1.6608 -8.2336 41 1 4.3760 -0.3905 -10.2201 42 1 5.1279 1.9552 -9.9213 43 1 4.7282 3.5415 -4.4163 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890284341.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:55 Heat of formation + Delta-G solvation = -14.308722 kcal Electronic energy + Delta-G solvation = -26626.568217 eV Core-core repulsion = 22865.487681 eV Total energy + Delta-G solvation = -3761.080536 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.93477 -40.92216 -39.81961 -38.78261 -36.21040 -35.08587 -34.38915 -32.27483 -31.58195 -31.07953 -28.42875 -27.80949 -27.08409 -24.97287 -23.53408 -23.34147 -22.65533 -21.14251 -20.24848 -19.43692 -18.58163 -18.16230 -17.52149 -16.88462 -16.65637 -16.45683 -16.29536 -15.85423 -15.61381 -15.40522 -15.05393 -14.81303 -14.67103 -14.14085 -13.91717 -13.81412 -13.75470 -13.19584 -13.13427 -12.90597 -12.76490 -12.74717 -12.56153 -12.53310 -12.38103 -12.31192 -11.76507 -11.72827 -11.61734 -11.26306 -11.24783 -10.92871 -10.58522 -10.11334 -9.94150 -9.20265 -8.92647 -8.09094 -6.43089 0.36258 1.01940 1.26765 1.42185 1.42570 1.53617 1.56351 2.27401 2.36468 2.69475 2.97655 3.35944 3.49542 3.58574 3.78959 3.87641 4.01050 4.24788 4.32301 4.50516 4.60580 4.64764 4.66800 4.76351 4.81209 4.90216 4.93774 4.95748 4.98104 4.98950 5.05478 5.14268 5.21051 5.26199 5.28364 5.40790 5.53333 5.63177 5.70979 5.89359 6.00853 6.16935 6.29503 6.54278 6.71632 6.85251 7.03524 7.28413 8.24611 8.55217 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013436 B = 0.004058 C = 0.003249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2083.478391 B = 6898.668380 C = 8615.940551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.087 4.087 3 C -0.138 4.138 4 C -0.114 4.114 5 C -0.151 4.151 6 C 0.111 3.889 7 H 0.108 0.892 8 N -0.679 5.679 9 C 0.518 3.482 10 O -0.547 6.547 11 C 0.458 3.542 12 O -0.420 6.420 13 N -0.633 5.633 14 C 0.346 3.654 15 C -0.343 4.343 16 C -0.033 4.033 17 C -0.322 4.322 18 C 0.237 3.763 19 C -0.461 4.461 20 H 0.087 0.913 21 C 0.014 3.986 22 N -0.694 5.694 23 Si 0.976 3.024 24 H -0.257 1.257 25 H -0.270 1.270 26 H -0.270 1.270 27 N -0.505 5.505 28 H 0.042 0.958 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.063 0.937 33 H 0.048 0.952 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.415 0.585 39 H 0.424 0.576 40 H 0.129 0.871 41 H 0.139 0.861 42 H 0.109 0.891 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.747 -5.457 13.980 16.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.088 4.088 3 C -0.196 4.196 4 C -0.152 4.152 5 C -0.190 4.190 6 C 0.008 3.992 7 H 0.126 0.874 8 N -0.332 5.332 9 C 0.298 3.702 10 O -0.426 6.426 11 C 0.236 3.764 12 O -0.285 6.285 13 N -0.283 5.283 14 C 0.108 3.892 15 C -0.368 4.368 16 C -0.057 4.057 17 C -0.345 4.345 18 C 0.111 3.889 19 C -0.492 4.492 20 H 0.105 0.895 21 C -0.211 4.211 22 N -0.313 5.313 23 Si 0.797 3.203 24 H -0.180 1.180 25 H -0.195 1.195 26 H -0.195 1.195 27 N -0.225 5.225 28 H 0.062 0.938 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.107 0.893 35 H 0.116 0.884 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.253 0.747 39 H 0.262 0.738 40 H 0.147 0.853 41 H 0.157 0.843 42 H 0.127 0.873 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.820 -4.994 15.122 16.955 hybrid contribution 0.314 0.168 -1.121 1.176 sum -5.506 -4.826 14.001 15.800 Atomic orbital electron populations 1.21759 0.93082 1.02750 1.01810 1.22269 0.96305 0.95283 0.94932 1.21644 1.01238 0.94351 1.02334 1.22867 0.97174 0.99063 0.96091 1.23424 0.97817 1.02249 0.95489 1.23161 0.96980 0.96315 0.82779 0.87398 1.45868 1.61117 1.17810 1.08370 1.20189 0.79036 0.86309 0.84643 1.90675 1.49531 1.17595 1.84758 1.20810 0.82526 0.88236 0.84794 1.91201 1.40097 1.15061 1.82123 1.42997 1.64579 1.14232 1.06481 1.19016 0.93482 0.91115 0.85550 1.20961 1.21638 1.02380 0.91837 1.21043 0.93527 0.93161 0.97976 1.21857 1.16830 0.97987 0.97815 1.18871 0.89089 0.93707 0.87213 1.19947 1.37760 0.96092 0.95359 0.89466 1.26993 0.94972 1.03561 0.95597 1.70473 1.25244 1.36030 0.99582 0.85251 0.78443 0.77239 0.79345 1.18004 1.19461 1.19468 1.68606 1.18029 1.03897 1.32000 0.93840 0.90884 0.91484 0.90155 0.91792 0.93283 0.89253 0.88368 0.89782 0.90752 0.74652 0.73799 0.85302 0.84278 0.87335 0.91567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.18 71.98 0.66 -1.46 16 2 C -0.09 -1.46 1.36 -51.66 -0.07 -1.53 16 3 C -0.14 -2.37 7.99 71.98 0.58 -1.79 16 4 C -0.11 -1.51 7.21 31.12 0.22 -1.29 16 5 C -0.15 -2.73 7.54 31.18 0.24 -2.50 16 6 C 0.11 2.47 3.70 45.58 0.17 2.63 16 7 H 0.11 2.60 7.42 -2.39 -0.02 2.58 16 8 N -0.68 -19.32 5.23 -441.16 -2.31 -21.63 16 9 C 0.52 18.19 7.89 87.24 0.69 18.88 16 10 O -0.55 -20.01 16.08 -3.27 -0.05 -20.06 16 11 C 0.46 19.56 7.84 87.24 0.68 20.24 16 12 O -0.42 -20.78 12.24 -3.29 -0.04 -20.82 16 13 N -0.63 -26.84 5.37 -309.70 -1.66 -28.50 16 14 C 0.35 17.18 7.42 133.30 0.99 18.17 16 15 C -0.34 -15.05 9.95 22.72 0.23 -14.83 16 16 C -0.03 -1.44 10.15 22.39 0.23 -1.21 16 17 C -0.32 -16.07 9.83 22.87 0.22 -15.85 16 18 C 0.24 13.46 6.55 40.20 0.26 13.72 16 19 C -0.46 -25.58 9.14 23.47 0.21 -25.37 16 20 H 0.09 4.54 7.85 -2.91 -0.02 4.52 16 21 C 0.01 0.74 5.50 85.29 0.47 1.21 16 22 N -0.69 -38.02 8.99 21.84 0.20 -37.83 16 23 Si 0.98 39.10 29.56 68.60 2.03 41.13 16 24 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 25 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 26 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 27 N -0.51 -28.76 5.73 -186.42 -1.07 -29.83 16 28 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 29 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.07 0.91 7.98 -2.39 -0.02 0.90 16 31 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.06 1.07 7.34 -2.39 -0.02 1.05 16 33 H 0.05 1.01 7.20 -2.39 -0.02 0.99 16 34 H 0.09 0.98 8.10 -2.38 -0.02 0.96 16 35 H 0.10 1.07 7.99 -2.39 -0.02 1.05 16 36 H 0.08 1.58 7.64 -2.39 -0.02 1.56 16 37 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.42 11.83 6.17 -92.71 -0.57 11.26 16 39 H 0.42 15.16 8.18 -92.71 -0.76 14.40 16 40 H 0.13 4.69 8.06 -2.91 -0.02 4.66 16 41 H 0.14 4.84 8.06 -2.91 -0.02 4.81 16 42 H 0.11 5.01 8.06 -2.91 -0.02 4.98 16 43 H 0.27 13.79 8.29 -92.71 -0.77 13.02 16 Total: -1.00 -68.92 356.66 2.60 -66.32 By element: Atomic # 1 Polarization: 42.45 SS G_CDS: -0.28 Total: 42.17 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: 5.78 Total: 9.04 kcal Atomic # 7 Polarization: -112.94 SS G_CDS: -4.84 Total: -117.78 kcal Atomic # 8 Polarization: -40.78 SS G_CDS: -0.09 Total: -40.88 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 2.03 Total: 41.13 kcal Total: -68.92 2.60 -66.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890284341.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.012 kcal (2) G-P(sol) polarization free energy of solvation -68.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds