Wall clock time and date at job start Tue Mar 31 2020 11:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50702 * 119.99841 * 2 1 4 4 N 1.46496 * 109.47091 * 125.00092 * 3 2 1 5 5 C 1.46505 * 120.00002 * 274.82847 * 4 3 2 6 6 C 1.50700 * 109.46890 * 263.74449 * 5 4 3 7 7 H 1.08003 * 120.00072 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99742 * 179.97438 * 6 5 4 9 9 N 1.31521 * 120.00271 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99826 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.47119 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.46957 * 119.99716 * 10 8 6 13 13 H 1.48499 * 109.47199 * 239.99852 * 10 8 6 14 14 C 1.34780 * 120.00030 * 94.82434 * 4 3 2 15 15 O 1.21348 * 120.00127 * 354.62213 * 14 4 3 16 16 C 1.49358 * 119.99577 * 174.61375 * 14 4 3 17 17 O 1.21370 * 120.00352 * 0.26353 * 16 14 4 18 18 N 1.34781 * 119.99602 * 180.25401 * 16 14 4 19 19 C 1.39745 * 120.00092 * 184.92663 * 18 16 14 20 20 C 1.38948 * 120.49782 * 145.29820 * 19 18 16 21 21 N 1.31776 * 120.65943 * 179.97438 * 20 19 18 22 22 C 1.31898 * 121.80048 * 0.03230 * 21 20 19 23 23 C 1.50695 * 119.53417 * 179.97438 * 22 21 20 24 24 C 1.38239 * 120.93243 * 359.97274 * 22 21 20 25 25 C 1.50700 * 120.37694 * 180.02562 * 24 22 21 26 26 C 1.38536 * 119.24443 * 359.74170 * 24 22 21 27 27 H 1.07999 * 120.00130 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.00117 * 180.02562 * 1 2 3 29 29 H 1.07999 * 120.00130 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.47393 * 4.99802 * 3 2 1 31 31 H 1.09003 * 109.46994 * 244.99533 * 3 2 1 32 32 H 1.09003 * 109.46852 * 23.74252 * 5 4 3 33 33 H 1.08995 * 109.47238 * 143.74460 * 5 4 3 34 34 H 0.96998 * 119.99978 * 180.02562 * 9 8 6 35 35 H 0.97000 * 119.99697 * 4.93728 * 18 16 14 36 36 H 1.08004 * 119.66836 * 0.02562 * 20 19 18 37 37 H 1.08999 * 109.47244 * 89.99795 * 23 22 21 38 38 H 1.08999 * 109.47066 * 209.99941 * 23 22 21 39 39 H 1.09007 * 109.46995 * 329.99785 * 23 22 21 40 40 H 1.09002 * 109.47131 * 89.99838 * 25 24 22 41 41 H 1.09000 * 109.46824 * 209.99817 * 25 24 22 42 42 H 1.08999 * 109.47305 * 329.99503 * 25 24 22 43 43 H 1.07997 * 120.82239 * 180.29880 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5294 1.7657 2.4514 6 6 2.8580 3.2236 2.6455 7 1 3.3628 3.7720 1.8638 8 6 2.5144 3.8572 3.8208 9 7 1.8993 3.1895 4.7724 10 14 2.9224 5.6642 4.0616 11 1 3.6095 6.1820 2.8513 12 1 1.6693 6.4292 4.2842 13 1 3.8123 5.8179 5.2404 14 6 4.2768 0.9575 0.9579 15 8 4.6382 0.5060 -0.1089 16 6 5.2538 1.0983 2.0788 17 8 4.8914 1.5455 3.1473 18 7 6.5381 0.7286 1.9037 19 6 7.4282 0.7632 2.9804 20 6 8.4345 -0.1881 3.0943 21 7 9.2759 -0.1583 4.1080 22 6 9.1997 0.7644 5.0475 23 6 10.1884 0.7500 6.1847 24 6 8.2258 1.7445 5.0037 25 6 8.1507 2.7930 6.0835 26 6 7.3234 1.7553 3.9527 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1317 0.0895 31 1 2.6214 1.4026 -0.9314 32 1 1.4509 1.6239 2.5218 33 1 3.0245 1.1759 3.2227 34 1 1.6572 3.6354 5.5991 35 1 6.8445 0.4387 1.0302 36 1 8.5285 -0.9593 2.3440 37 1 11.0584 1.3498 5.9174 38 1 9.7212 1.1652 7.0776 39 1 10.5009 -0.2756 6.3815 40 1 8.7641 3.6490 5.8020 41 1 7.1161 3.1126 6.2082 42 1 8.5176 2.3758 7.0213 43 1 6.5553 2.5120 3.8906 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890293869.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:25 Heat of formation + Delta-G solvation = 2.395836 kcal Electronic energy + Delta-G solvation = -26692.071747 eV Core-core repulsion = 22931.715575 eV Total energy + Delta-G solvation = -3760.356172 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.86928 -39.80865 -38.06660 -36.04875 -34.99049 -33.62590 -33.28809 -32.13256 -31.57328 -28.08728 -27.59811 -26.98309 -26.20266 -23.76866 -22.79744 -22.60140 -20.99868 -19.95540 -19.25017 -17.51900 -16.84385 -16.62631 -16.43033 -16.04728 -15.62241 -15.29950 -14.86685 -14.73132 -14.49283 -14.28475 -13.67188 -13.34629 -13.18293 -13.01516 -12.80932 -12.78465 -12.65146 -12.34196 -12.29935 -12.06175 -11.69608 -11.55782 -11.39072 -11.20480 -10.96623 -10.88598 -10.57845 -10.45160 -10.07796 -9.75334 -9.54483 -9.25004 -9.12756 -8.70228 -8.33652 -8.07491 -7.91286 -6.08355 -4.10748 1.09415 1.42612 2.07140 2.38608 2.91355 3.24262 3.32420 3.35693 3.69661 3.93975 4.06080 4.38850 4.44793 4.78779 4.92136 5.01164 5.04913 5.16102 5.24552 5.28188 5.42799 5.47819 5.56434 5.63993 5.69537 5.76630 5.80666 5.92109 6.04547 6.06622 6.19465 6.25001 6.40888 6.50885 6.54948 6.82510 6.93570 6.96326 7.26479 7.33512 7.46891 7.79846 8.00608 8.05987 8.12659 8.25988 8.57418 8.89468 9.51743 11.00551 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011021 B = 0.004883 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.103324 B = 5732.624282 C = 7747.065713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.160 4.160 3 C 0.140 3.860 4 N -0.554 5.554 5 C 0.229 3.771 6 C -0.514 4.514 7 H 0.054 0.946 8 C 0.070 3.930 9 N -0.889 5.889 10 Si 0.891 3.109 11 H -0.275 1.275 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.508 3.492 15 O -0.559 6.559 16 C 0.488 3.512 17 O -0.428 6.428 18 N -0.658 5.658 19 C 0.106 3.894 20 C 0.071 3.929 21 N -0.466 5.466 22 C 0.097 3.903 23 C -0.101 4.101 24 C -0.114 4.114 25 C -0.114 4.114 26 C -0.078 4.078 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.106 0.894 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.034 0.966 33 H 0.065 0.935 34 H 0.262 0.738 35 H 0.418 0.582 36 H 0.156 0.844 37 H 0.073 0.927 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.210 -4.322 -2.066 10.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.179 4.179 3 C 0.017 3.983 4 N -0.284 5.284 5 C 0.111 3.889 6 C -0.553 4.553 7 H 0.073 0.927 8 C -0.133 4.133 9 N -0.527 5.527 10 Si 0.719 3.281 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.291 3.709 15 O -0.440 6.440 16 C 0.270 3.730 17 O -0.295 6.295 18 N -0.307 5.307 19 C 0.009 3.991 20 C -0.090 4.090 21 N -0.174 5.174 22 C -0.042 4.042 23 C -0.158 4.158 24 C -0.116 4.116 25 C -0.171 4.171 26 C -0.105 4.105 27 H 0.117 0.883 28 H 0.113 0.887 29 H 0.124 0.876 30 H 0.107 0.893 31 H 0.104 0.896 32 H 0.052 0.948 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.255 0.745 36 H 0.173 0.827 37 H 0.092 0.908 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 9.568 -4.808 -1.583 10.824 hybrid contribution -0.510 1.474 -0.323 1.593 sum 9.057 -3.334 -1.906 9.838 Atomic orbital electron populations 1.23807 0.95722 1.01780 1.00959 1.23291 0.96123 0.98971 0.99502 1.20616 0.92209 0.95414 0.90020 1.48277 1.07116 1.59656 1.13347 1.19957 0.95931 0.96361 0.76683 1.21220 1.38527 0.94160 1.01415 0.92743 1.24794 0.94974 0.97933 0.95549 1.69929 1.40290 1.36153 1.06356 0.86564 0.78134 0.85274 0.78165 1.19932 1.21002 1.20888 1.19722 0.83893 0.79958 0.87372 1.90656 1.78975 1.46793 1.27590 1.20462 0.82642 0.80049 0.89864 1.90987 1.76412 1.36253 1.25845 1.43130 1.08511 1.67038 1.12023 1.18780 0.93101 0.95992 0.91264 1.22494 0.92765 0.96737 0.97004 1.67425 1.24836 1.23454 1.01715 1.21022 0.95940 0.91713 0.95486 1.20698 0.97036 1.03310 0.94733 1.20630 0.95523 0.98197 0.97295 1.20837 1.03619 0.96586 0.96103 1.21835 0.98444 0.97230 0.93015 0.88297 0.88669 0.87610 0.89323 0.89559 0.94777 0.91763 0.92863 0.74486 0.82665 0.90797 0.90534 0.90866 0.90928 0.90682 0.90873 0.82570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.53 14.32 29.01 0.42 -2.11 16 2 C -0.16 -2.49 9.84 -36.03 -0.35 -2.85 16 3 C 0.14 2.44 5.83 -5.19 -0.03 2.41 16 4 N -0.55 -11.49 2.46 -176.98 -0.43 -11.93 16 5 C 0.23 5.56 4.78 -5.19 -0.02 5.54 16 6 C -0.51 -13.54 7.80 -34.44 -0.27 -13.81 16 7 H 0.05 1.46 7.81 -52.48 -0.41 1.05 16 8 C 0.07 1.89 5.46 -17.82 -0.10 1.80 16 9 N -0.89 -25.14 13.29 55.43 0.74 -24.40 16 10 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 C 0.51 10.27 7.67 -11.63 -0.09 10.18 16 15 O -0.56 -11.15 16.04 5.50 0.09 -11.06 16 16 C 0.49 9.64 7.58 -11.63 -0.09 9.56 16 17 O -0.43 -9.80 9.59 5.48 0.05 -9.75 16 18 N -0.66 -10.55 5.33 -10.20 -0.05 -10.60 16 19 C 0.11 1.69 6.32 -83.59 -0.53 1.16 16 20 C 0.07 1.00 11.13 -17.31 -0.19 0.81 16 21 N -0.47 -6.90 10.26 -9.30 -0.10 -7.00 16 22 C 0.10 1.34 6.78 -82.57 -0.56 0.78 16 23 C -0.10 -1.02 9.76 36.00 0.35 -0.67 16 24 C -0.11 -1.68 5.89 -104.51 -0.62 -2.29 16 25 C -0.11 -1.39 9.62 36.01 0.35 -1.04 16 26 C -0.08 -1.32 8.49 -39.08 -0.33 -1.65 16 27 H 0.10 1.30 7.84 -52.49 -0.41 0.89 16 28 H 0.09 1.12 8.06 -52.49 -0.42 0.70 16 29 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 30 H 0.09 1.51 7.76 -51.93 -0.40 1.11 16 31 H 0.09 1.45 7.36 -51.93 -0.38 1.07 16 32 H 0.03 0.87 8.02 -51.93 -0.42 0.45 16 33 H 0.06 1.71 5.84 -51.93 -0.30 1.41 16 34 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 35 H 0.42 5.67 8.30 -40.82 -0.34 5.34 16 36 H 0.16 1.76 8.06 -52.48 -0.42 1.34 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 0.66 5.93 -51.93 -0.31 0.35 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 42 H 0.07 0.73 5.95 -51.93 -0.31 0.42 16 43 H 0.16 3.02 6.31 -52.49 -0.33 2.69 16 LS Contribution 365.24 15.07 5.50 5.50 Total: -1.00 -30.72 365.24 -7.00 -37.71 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -5.71 Total: 7.76 kcal Atomic # 6 Polarization: 9.87 SS G_CDS: -2.07 Total: 7.80 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: 0.15 Total: -53.93 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: 0.14 Total: -20.81 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.72 -7.00 -37.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890293869.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.110 kcal (2) G-P(sol) polarization free energy of solvation -30.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds