Wall clock time and date at job start Tue Mar 31 2020 11:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50702 * 119.99841 * 2 1 4 4 N 1.46496 * 109.47091 * 125.00092 * 3 2 1 5 5 C 1.46505 * 120.00002 * 274.82847 * 4 3 2 6 6 C 1.50700 * 109.46890 * 263.74449 * 5 4 3 7 7 H 1.08003 * 120.00072 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99742 * 179.97438 * 6 5 4 9 9 N 1.31521 * 120.00271 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99826 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.47119 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.46957 * 119.99716 * 10 8 6 13 13 H 1.48499 * 109.47199 * 239.99852 * 10 8 6 14 14 C 1.34780 * 120.00030 * 94.82434 * 4 3 2 15 15 O 1.21348 * 120.00127 * 354.62213 * 14 4 3 16 16 C 1.49358 * 119.99577 * 174.61375 * 14 4 3 17 17 O 1.21370 * 120.00352 * 0.26353 * 16 14 4 18 18 N 1.34781 * 119.99602 * 180.25401 * 16 14 4 19 19 C 1.39745 * 120.00092 * 184.92663 * 18 16 14 20 20 C 1.38948 * 120.49782 * 145.29820 * 19 18 16 21 21 N 1.31776 * 120.65943 * 179.97438 * 20 19 18 22 22 C 1.31898 * 121.80048 * 0.03230 * 21 20 19 23 23 C 1.50695 * 119.53417 * 179.97438 * 22 21 20 24 24 C 1.38239 * 120.93243 * 359.97274 * 22 21 20 25 25 C 1.50700 * 120.37694 * 180.02562 * 24 22 21 26 26 C 1.38536 * 119.24443 * 359.74170 * 24 22 21 27 27 H 1.07999 * 120.00130 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.00117 * 180.02562 * 1 2 3 29 29 H 1.07999 * 120.00130 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.47393 * 4.99802 * 3 2 1 31 31 H 1.09003 * 109.46994 * 244.99533 * 3 2 1 32 32 H 1.09003 * 109.46852 * 23.74252 * 5 4 3 33 33 H 1.08995 * 109.47238 * 143.74460 * 5 4 3 34 34 H 0.96998 * 119.99978 * 180.02562 * 9 8 6 35 35 H 0.97000 * 119.99697 * 4.93728 * 18 16 14 36 36 H 1.08004 * 119.66836 * 0.02562 * 20 19 18 37 37 H 1.08999 * 109.47244 * 89.99795 * 23 22 21 38 38 H 1.08999 * 109.47066 * 209.99941 * 23 22 21 39 39 H 1.09007 * 109.46995 * 329.99785 * 23 22 21 40 40 H 1.09002 * 109.47131 * 89.99838 * 25 24 22 41 41 H 1.09000 * 109.46824 * 209.99817 * 25 24 22 42 42 H 1.08999 * 109.47305 * 329.99503 * 25 24 22 43 43 H 1.07997 * 120.82239 * 180.29880 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1314 5 6 2.5294 1.7657 2.4514 6 6 2.8580 3.2236 2.6455 7 1 3.3628 3.7720 1.8638 8 6 2.5144 3.8572 3.8208 9 7 1.8993 3.1895 4.7724 10 14 2.9224 5.6642 4.0616 11 1 3.6095 6.1820 2.8513 12 1 1.6693 6.4292 4.2842 13 1 3.8123 5.8179 5.2404 14 6 4.2768 0.9575 0.9579 15 8 4.6382 0.5060 -0.1089 16 6 5.2538 1.0983 2.0788 17 8 4.8914 1.5455 3.1473 18 7 6.5381 0.7286 1.9037 19 6 7.4282 0.7632 2.9804 20 6 8.4345 -0.1881 3.0943 21 7 9.2759 -0.1583 4.1080 22 6 9.1997 0.7644 5.0475 23 6 10.1884 0.7500 6.1847 24 6 8.2258 1.7445 5.0037 25 6 8.1507 2.7930 6.0835 26 6 7.3234 1.7553 3.9527 27 1 -0.5400 0.9353 -0.0004 28 1 -0.5400 -0.9353 0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3586 2.1317 0.0895 31 1 2.6214 1.4026 -0.9314 32 1 1.4509 1.6239 2.5218 33 1 3.0245 1.1759 3.2227 34 1 1.6572 3.6354 5.5991 35 1 6.8445 0.4387 1.0302 36 1 8.5285 -0.9593 2.3440 37 1 11.0584 1.3498 5.9174 38 1 9.7212 1.1652 7.0776 39 1 10.5009 -0.2756 6.3815 40 1 8.7641 3.6490 5.8020 41 1 7.1161 3.1126 6.2082 42 1 8.5176 2.3758 7.0213 43 1 6.5553 2.5120 3.8906 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890293869.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:24 Heat of formation + Delta-G solvation = -16.599214 kcal Electronic energy + Delta-G solvation = -26692.895434 eV Core-core repulsion = 22931.715575 eV Total energy + Delta-G solvation = -3761.179859 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.25778 -41.18442 -39.57672 -37.62978 -36.34436 -35.04765 -34.70764 -33.83570 -32.73626 -29.46533 -29.17492 -28.21561 -27.54271 -25.44539 -24.36987 -23.85522 -22.25737 -21.30382 -20.61761 -19.09241 -18.55897 -18.26776 -17.66272 -17.46723 -17.00352 -16.89502 -16.37421 -16.14556 -15.97551 -15.64540 -15.10523 -14.67198 -14.44650 -14.31998 -14.21289 -14.09810 -13.76924 -13.76550 -13.57112 -13.33067 -13.04964 -13.01036 -12.85495 -12.76159 -12.40050 -12.35310 -12.29566 -11.93394 -11.77898 -11.65790 -10.85501 -10.58265 -10.48778 -10.34108 -10.00556 -9.69343 -9.22799 -8.15257 -6.23608 -0.13176 0.19959 0.55217 1.09926 1.36524 1.38666 1.48609 1.57451 2.16808 2.38985 2.61778 2.72991 3.18810 3.30468 3.44588 3.77873 3.85720 3.92131 4.01494 4.05303 4.14148 4.44286 4.48410 4.63197 4.67453 4.75207 4.77177 4.80646 4.85874 4.93875 5.01491 5.08412 5.11504 5.26281 5.31127 5.37858 5.46633 5.66162 5.73558 5.77607 5.82892 6.01942 6.10063 6.27143 6.71765 6.80574 6.92053 7.03206 7.42325 8.93426 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011021 B = 0.004883 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.103324 B = 5732.624282 C = 7747.065713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.184 4.184 3 C 0.137 3.863 4 N -0.560 5.560 5 C 0.251 3.749 6 C -0.515 4.515 7 H 0.045 0.955 8 C 0.024 3.976 9 N -0.921 5.921 10 Si 0.948 3.052 11 H -0.272 1.272 12 H -0.275 1.275 13 H -0.281 1.281 14 C 0.507 3.493 15 O -0.555 6.555 16 C 0.488 3.512 17 O -0.468 6.468 18 N -0.638 5.638 19 C 0.086 3.914 20 C 0.080 3.920 21 N -0.476 5.476 22 C 0.099 3.901 23 C -0.099 4.099 24 C -0.122 4.122 25 C -0.112 4.112 26 C -0.099 4.099 27 H 0.105 0.895 28 H 0.119 0.881 29 H 0.104 0.896 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.020 0.980 33 H 0.040 0.960 34 H 0.263 0.737 35 H 0.430 0.570 36 H 0.186 0.814 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.052 0.948 42 H 0.100 0.900 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.524 -4.546 -2.094 11.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.203 4.203 3 C 0.016 3.984 4 N -0.290 5.290 5 C 0.131 3.869 6 C -0.554 4.554 7 H 0.064 0.936 8 C -0.175 4.175 9 N -0.561 5.561 10 Si 0.774 3.226 11 H -0.197 1.197 12 H -0.201 1.201 13 H -0.207 1.207 14 C 0.289 3.711 15 O -0.437 6.437 16 C 0.269 3.731 17 O -0.337 6.337 18 N -0.288 5.288 19 C -0.011 4.011 20 C -0.080 4.080 21 N -0.185 5.185 22 C -0.039 4.039 23 C -0.156 4.156 24 C -0.125 4.125 25 C -0.169 4.169 26 C -0.127 4.127 27 H 0.123 0.877 28 H 0.137 0.863 29 H 0.122 0.878 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.038 0.962 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.269 0.731 36 H 0.202 0.798 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.097 0.903 40 H 0.108 0.892 41 H 0.071 0.929 42 H 0.118 0.882 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 10.914 -5.049 -1.659 12.139 hybrid contribution -0.864 1.482 -0.339 1.749 sum 10.050 -3.567 -1.999 10.849 Atomic orbital electron populations 1.24068 0.95050 1.03229 0.97598 1.23147 0.96782 0.97843 1.02539 1.20776 0.91955 0.96730 0.88922 1.48229 1.07930 1.59808 1.13021 1.19423 0.94481 0.95062 0.77940 1.21362 1.37792 0.95116 1.01131 0.93641 1.25494 0.94958 1.01727 0.95357 1.70029 1.41514 1.37723 1.06817 0.85663 0.78122 0.80830 0.77975 1.19684 1.20061 1.20718 1.19835 0.83882 0.79808 0.87571 1.90644 1.78888 1.46689 1.27446 1.20489 0.83623 0.79796 0.89184 1.90983 1.77258 1.38459 1.27044 1.42913 1.07343 1.65742 1.12830 1.18912 0.93933 0.96898 0.91330 1.22898 0.91407 0.96395 0.97288 1.67567 1.24966 1.23840 1.02106 1.21647 0.95863 0.90489 0.95943 1.20831 0.96743 1.04280 0.93757 1.20908 0.95211 0.99180 0.97172 1.20889 1.02729 0.96684 0.96588 1.21754 0.98766 0.97434 0.94748 0.87697 0.86278 0.87773 0.89304 0.89042 0.96176 0.94235 0.92796 0.73051 0.79762 0.88896 0.88813 0.90283 0.89231 0.92907 0.88196 0.85732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.16 14.32 67.78 0.97 -3.19 16 2 C -0.18 -5.64 9.84 25.64 0.25 -5.39 16 3 C 0.14 4.82 5.83 85.63 0.50 5.32 16 4 N -0.56 -23.76 2.46 -832.19 -2.05 -25.81 16 5 C 0.25 12.63 4.78 85.63 0.41 13.04 16 6 C -0.52 -27.88 7.80 25.60 0.20 -27.68 16 7 H 0.05 2.49 7.81 -2.91 -0.02 2.47 16 8 C 0.02 1.33 5.46 84.65 0.46 1.79 16 9 N -0.92 -53.36 13.29 21.45 0.28 -53.07 16 10 Si 0.95 43.66 29.54 68.60 2.03 45.68 16 11 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 12 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 13 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 14 C 0.51 20.83 7.67 87.24 0.67 21.50 16 15 O -0.56 -22.04 16.04 -3.24 -0.05 -22.09 16 16 C 0.49 19.89 7.58 87.24 0.66 20.55 16 17 O -0.47 -22.51 9.59 -3.31 -0.03 -22.54 16 18 N -0.64 -20.70 5.33 -304.52 -1.62 -22.32 16 19 C 0.09 2.74 6.32 38.31 0.24 2.99 16 20 C 0.08 2.17 11.13 84.87 0.94 3.12 16 21 N -0.48 -13.24 10.26 -183.32 -1.88 -15.12 16 22 C 0.10 2.56 6.78 42.55 0.29 2.85 16 23 C -0.10 -1.71 9.76 71.23 0.70 -1.01 16 24 C -0.12 -3.54 5.89 -19.79 -0.12 -3.66 16 25 C -0.11 -2.62 9.62 71.24 0.69 -1.93 16 26 C -0.10 -3.48 8.49 22.60 0.19 -3.29 16 27 H 0.10 2.58 7.84 -2.91 -0.02 2.55 16 28 H 0.12 2.50 8.06 -2.91 -0.02 2.48 16 29 H 0.10 3.21 8.06 -2.91 -0.02 3.19 16 30 H 0.09 3.05 7.76 -2.39 -0.02 3.03 16 31 H 0.09 3.06 7.36 -2.39 -0.02 3.04 16 32 H 0.02 1.06 8.02 -2.39 -0.02 1.04 16 33 H 0.04 2.22 5.84 -2.39 -0.01 2.20 16 34 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 35 H 0.43 11.47 8.30 -92.71 -0.77 10.70 16 36 H 0.19 3.75 8.06 -2.91 -0.02 3.73 16 37 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.09 1.29 5.93 -2.39 -0.01 1.28 16 39 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 40 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.05 1.47 8.10 -2.39 -0.02 1.45 16 42 H 0.10 1.75 5.95 -2.39 -0.01 1.73 16 43 H 0.12 5.18 6.31 -2.91 -0.02 5.16 16 Total: -1.00 -67.42 365.24 4.00 -63.41 By element: Atomic # 1 Polarization: 26.59 SS G_CDS: 0.27 Total: 26.86 kcal Atomic # 6 Polarization: 17.95 SS G_CDS: 7.05 Total: 25.00 kcal Atomic # 7 Polarization: -111.06 SS G_CDS: -5.27 Total: -116.32 kcal Atomic # 8 Polarization: -44.55 SS G_CDS: -0.08 Total: -44.64 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Total: -67.42 4.00 -63.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890293869.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.815 kcal (2) G-P(sol) polarization free energy of solvation -67.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds