Wall clock time and date at job start Tue Mar 31 2020 11:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 112.85040 * 2 1 4 4 C 1.53784 * 113.61173 * 131.19309 * 2 1 3 5 5 C 1.53784 * 87.08132 * 89.12004 * 4 2 1 6 6 N 1.46497 * 113.61804 * 139.98160 * 5 4 2 7 7 C 1.34775 * 119.99944 * 156.52573 * 6 5 4 8 8 O 1.21355 * 120.00579 * 0.02562 * 7 6 5 9 9 C 1.49371 * 119.99920 * 179.97438 * 7 6 5 10 10 O 1.21362 * 119.99781 * 0.02562 * 9 7 6 11 11 N 1.34775 * 119.99920 * 179.97438 * 9 7 6 12 12 C 1.39117 * 119.99568 * 185.60784 * 11 9 7 13 13 C 1.39703 * 119.58155 * 18.94837 * 12 11 9 14 14 C 1.38654 * 119.49885 * 180.02562 * 13 12 11 15 15 C 1.38353 * 118.66578 * 359.72488 * 14 13 12 16 16 C 1.40597 * 119.13207 * 0.53350 * 15 14 13 17 17 C 1.41346 * 119.78200 * 179.72923 * 16 15 14 18 18 H 1.08000 * 119.99622 * 7.00235 * 17 16 15 19 19 C 1.40024 * 119.99818 * 187.00431 * 17 16 15 20 20 N 1.30740 * 119.99814 * 181.90660 * 19 17 16 21 21 Si 1.86797 * 120.00331 * 1.90544 * 19 17 16 22 22 H 1.48499 * 109.47090 * 179.97438 * 21 19 17 23 23 H 1.48500 * 109.47238 * 300.00224 * 21 19 17 24 24 H 1.48506 * 109.46836 * 59.99940 * 21 19 17 25 25 N 1.31931 * 119.57822 * 198.96091 * 12 11 9 26 26 C 1.53779 * 87.17441 * 25.38536 * 5 4 2 27 27 H 1.08998 * 109.47380 * 288.80500 * 1 2 3 28 28 H 1.09002 * 109.46915 * 48.80564 * 1 2 3 29 29 H 1.08997 * 109.46983 * 168.80673 * 1 2 3 30 30 H 1.09004 * 109.47032 * 191.19478 * 3 2 1 31 31 H 1.09001 * 109.46975 * 311.19519 * 3 2 1 32 32 H 1.09004 * 109.47306 * 71.19208 * 3 2 1 33 33 H 1.08997 * 113.62112 * 334.56867 * 4 2 1 34 34 H 1.09000 * 113.61228 * 203.66199 * 4 2 1 35 35 H 1.09007 * 113.60906 * 270.80043 * 5 4 2 36 36 H 0.96995 * 119.99986 * 336.52425 * 6 5 4 37 37 H 0.96991 * 120.00352 * 5.61391 * 11 9 7 38 38 H 1.08008 * 120.25509 * 359.97438 * 13 12 11 39 39 H 1.07990 * 120.66846 * 180.02562 * 14 13 12 40 40 H 1.07993 * 120.43148 * 180.28291 * 15 14 13 41 41 H 0.97007 * 120.00076 * 354.82632 * 20 19 17 42 42 H 1.09000 * 113.61116 * 89.15785 * 26 5 4 43 43 H 1.08993 * 113.62014 * 220.05998 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 6 2.1460 -0.9280 1.0603 5 6 2.0930 -2.0426 0.0021 6 7 3.2740 -2.9094 0.0030 7 6 3.1928 -4.1595 -0.4942 8 8 2.1415 -4.5669 -0.9430 9 6 4.3971 -5.0431 -0.4938 10 8 5.4486 -4.6354 -0.0454 11 7 4.3157 -6.2933 -0.9905 12 6 5.4022 -7.1557 -0.8848 13 6 6.4027 -6.8927 0.0540 14 6 7.4851 -7.7531 0.1576 15 6 7.5375 -8.8569 -0.6749 16 6 6.5019 -9.0639 -1.6030 17 6 6.5444 -10.1840 -2.4642 18 1 7.3076 -10.9369 -2.3334 19 6 5.5971 -10.3173 -3.4867 20 7 5.6136 -11.3717 -4.2596 21 14 4.3099 -8.9888 -3.7466 22 1 3.4326 -9.3654 -4.8840 23 1 3.4915 -8.8450 -2.5158 24 1 4.9830 -7.6995 -4.0468 25 7 5.4746 -8.2115 -1.6726 26 6 2.1448 -0.9318 -1.0602 27 1 -0.3634 0.3313 0.9728 28 1 -0.3633 0.6769 -0.7733 29 1 -0.3633 -1.0081 -0.1995 30 1 3.1943 1.3532 -0.1995 31 1 1.6415 2.0075 -0.7733 32 1 1.9599 1.8734 0.9728 33 1 1.4945 -1.1068 1.9157 34 1 3.1590 -0.6486 1.3496 35 1 1.1574 -2.6019 0.0036 36 1 4.1144 -2.5836 0.3613 37 1 3.4998 -6.5918 -1.4216 38 1 6.3342 -6.0252 0.6938 39 1 8.2690 -7.5681 0.8769 40 1 8.3650 -9.5482 -0.6154 41 1 6.3259 -12.0246 -4.1742 42 1 3.1575 -0.6533 -1.3516 43 1 1.4924 -1.1135 -1.9142 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890389196.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:59 Heat of formation + Delta-G solvation = -26.350098 kcal Electronic energy + Delta-G solvation = -25814.726536 eV Core-core repulsion = 22053.123846 eV Total energy + Delta-G solvation = -3761.602689 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.06999 -40.14246 -38.83257 -37.88544 -35.09908 -34.08918 -33.50558 -31.20781 -30.28038 -29.69882 -27.83096 -26.17063 -25.94557 -25.08519 -22.60629 -21.89594 -21.21139 -20.10866 -19.08373 -18.46077 -18.14118 -17.12841 -16.48613 -16.09729 -15.84061 -15.24552 -15.18213 -14.82599 -14.54376 -14.21628 -14.05176 -13.60908 -13.58406 -13.20786 -13.16077 -13.09916 -12.73370 -12.29249 -12.27448 -12.05760 -11.98623 -11.86021 -11.73873 -11.31837 -10.93798 -10.76860 -10.68995 -10.52876 -10.41922 -10.10794 -9.67652 -9.36095 -9.30766 -9.18578 -8.64412 -7.86119 -7.51304 -7.29130 -4.84006 1.26177 2.27665 2.47810 2.56716 3.28180 3.54988 3.60975 3.67409 3.97888 4.01673 4.08151 4.36416 4.37152 4.41530 4.46214 4.59727 4.82018 5.07287 5.18058 5.22602 5.35145 5.38874 5.44575 5.45649 5.51457 5.63057 5.64415 5.74160 5.74538 5.90701 5.94597 5.99972 6.16873 6.31625 6.36865 6.43765 6.87109 7.00244 7.10974 7.36748 7.42343 7.47848 7.64711 7.72686 8.01030 8.08647 8.28075 8.57753 9.31216 9.96140 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023179 B = 0.002891 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.705342 B = 9684.339501 C =10612.783903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.086 4.086 3 C -0.134 4.134 4 C -0.137 4.137 5 C 0.120 3.880 6 N -0.692 5.692 7 C 0.514 3.486 8 O -0.514 6.514 9 C 0.507 3.493 10 O -0.496 6.496 11 N -0.623 5.623 12 C 0.382 3.618 13 C -0.310 4.310 14 C -0.034 4.034 15 C -0.270 4.270 16 C 0.272 3.728 17 C -0.472 4.472 18 H 0.085 0.915 19 C 0.043 3.957 20 N -0.802 5.802 21 Si 1.154 2.846 22 H -0.330 1.330 23 H -0.283 1.283 24 H -0.293 1.293 25 N -0.595 5.595 26 C -0.144 4.144 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.119 0.881 36 H 0.413 0.587 37 H 0.420 0.580 38 H 0.138 0.862 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.284 0.716 42 H 0.088 0.912 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.671 21.503 8.666 24.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.087 4.087 3 C -0.191 4.191 4 C -0.175 4.175 5 C 0.016 3.984 6 N -0.345 5.345 7 C 0.295 3.705 8 O -0.389 6.389 9 C 0.288 3.712 10 O -0.370 6.370 11 N -0.269 5.269 12 C 0.152 3.848 13 C -0.334 4.334 14 C -0.059 4.059 15 C -0.293 4.293 16 C 0.148 3.852 17 C -0.504 4.504 18 H 0.103 0.897 19 C -0.178 4.178 20 N -0.424 5.424 21 Si 0.989 3.011 22 H -0.263 1.263 23 H -0.211 1.211 24 H -0.222 1.222 25 N -0.320 5.320 26 C -0.183 4.183 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.137 0.863 36 H 0.250 0.750 37 H 0.257 0.743 38 H 0.156 0.844 39 H 0.127 0.873 40 H 0.126 0.874 41 H 0.095 0.905 42 H 0.106 0.894 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.574 21.595 7.182 24.690 hybrid contribution 2.274 -0.523 1.447 2.745 sum -7.300 21.072 8.629 23.912 Atomic orbital electron populations 1.21644 0.92804 1.02351 1.02081 1.21659 0.95793 0.94612 0.96628 1.21707 1.00579 0.95005 1.01837 1.23489 1.02128 0.94802 0.97114 1.22678 0.89618 0.88954 0.97188 1.45731 1.14648 1.12731 1.61380 1.20081 0.88554 0.82956 0.78936 1.90778 1.29928 1.73911 1.44294 1.19979 0.88757 0.82509 0.79959 1.90690 1.29080 1.73187 1.44015 1.42950 1.17091 1.11413 1.55487 1.18024 0.86507 0.88381 0.91882 1.21469 0.98707 1.06583 1.06678 1.20921 0.95869 0.93013 0.96056 1.21650 1.02269 1.01447 1.03912 1.18284 0.85897 0.90119 0.90901 1.20754 1.13639 1.04720 1.11252 0.89683 1.27783 1.00008 0.99364 0.90665 1.70646 1.30090 1.07406 1.34228 0.81837 0.73805 0.72046 0.73415 1.26323 1.21071 1.22153 1.65958 1.28568 1.08424 1.29060 1.23658 1.01951 0.95225 0.97472 0.92163 0.92126 0.92096 0.92390 0.92437 0.92419 0.90412 0.89208 0.86350 0.74985 0.74250 0.84412 0.87347 0.87440 0.90502 0.89374 0.90598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.76 9.07 37.16 0.34 -0.43 16 2 C -0.09 -0.54 1.39 -153.60 -0.21 -0.75 16 3 C -0.13 -0.73 9.20 37.16 0.34 -0.39 16 4 C -0.14 -0.89 6.98 -25.92 -0.18 -1.07 16 5 C 0.12 1.06 3.86 -67.12 -0.26 0.80 16 6 N -0.69 -7.44 5.35 -53.47 -0.29 -7.72 16 7 C 0.51 7.43 7.89 -11.62 -0.09 7.34 16 8 O -0.51 -8.43 16.10 5.49 0.09 -8.34 16 9 C 0.51 8.70 7.73 -11.62 -0.09 8.61 16 10 O -0.50 -8.95 13.27 5.49 0.07 -8.87 16 11 N -0.62 -12.32 5.40 -11.83 -0.06 -12.38 16 12 C 0.38 8.84 7.50 -155.09 -1.16 7.67 16 13 C -0.31 -6.78 8.83 -38.88 -0.34 -7.13 16 14 C -0.03 -0.73 10.15 -39.39 -0.40 -1.13 16 15 C -0.27 -6.33 9.83 -38.65 -0.38 -6.71 16 16 C 0.27 7.11 6.39 -85.00 -0.54 6.57 16 17 C -0.47 -12.79 9.58 -37.73 -0.36 -13.15 16 18 H 0.09 2.28 8.05 -52.49 -0.42 1.86 16 19 C 0.04 1.18 5.52 -17.35 -0.10 1.09 16 20 N -0.80 -21.83 13.65 55.55 0.76 -21.07 16 21 Si 1.15 28.63 25.53 -169.99 -4.34 24.29 16 22 H -0.33 -8.09 7.11 56.52 0.40 -7.69 16 23 H -0.28 -6.84 6.70 56.52 0.38 -6.46 16 24 H -0.29 -7.37 7.10 56.52 0.40 -6.97 16 25 N -0.59 -15.21 4.59 -10.28 -0.05 -15.26 16 26 C -0.14 -1.13 7.01 -25.83 -0.18 -1.31 16 27 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.38 7.34 -51.93 -0.38 0.00 16 30 H 0.06 0.32 7.96 -51.93 -0.41 -0.10 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.08 0.47 8.10 -51.93 -0.42 0.05 16 34 H 0.09 0.52 8.07 -51.93 -0.42 0.10 16 35 H 0.12 1.17 7.02 -51.93 -0.36 0.81 16 36 H 0.41 3.88 8.18 -40.82 -0.33 3.55 16 37 H 0.42 7.97 8.30 -40.82 -0.34 7.63 16 38 H 0.14 2.86 5.33 -52.50 -0.28 2.58 16 39 H 0.11 1.93 8.06 -52.49 -0.42 1.50 16 40 H 0.11 2.33 8.06 -52.49 -0.42 1.90 16 41 H 0.28 7.35 8.72 -40.82 -0.36 6.99 16 42 H 0.09 0.68 7.98 -51.93 -0.41 0.27 16 43 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 LS Contribution 357.56 15.07 5.39 5.39 Total: -1.00 -30.21 357.56 -7.98 -38.18 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -5.92 Total: 5.77 kcal Atomic # 6 Polarization: 3.64 SS G_CDS: -3.63 Total: 0.02 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: 0.36 Total: -56.44 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: 0.16 Total: -17.22 kcal Atomic # 14 Polarization: 28.63 SS G_CDS: -4.34 Total: 24.29 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.21 -7.98 -38.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890389196.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.834 kcal (2) G-P(sol) polarization free energy of solvation -30.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds