Wall clock time and date at job start Tue Mar 31 2020 11:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 112.85040 * 2 1 4 4 C 1.53784 * 113.61173 * 131.19309 * 2 1 3 5 5 C 1.53784 * 87.08132 * 89.12004 * 4 2 1 6 6 N 1.46497 * 113.61804 * 139.98160 * 5 4 2 7 7 C 1.34775 * 119.99944 * 156.52573 * 6 5 4 8 8 O 1.21355 * 120.00579 * 0.02562 * 7 6 5 9 9 C 1.49371 * 119.99920 * 179.97438 * 7 6 5 10 10 O 1.21362 * 119.99781 * 0.02562 * 9 7 6 11 11 N 1.34775 * 119.99920 * 179.97438 * 9 7 6 12 12 C 1.39117 * 119.99568 * 185.60784 * 11 9 7 13 13 C 1.39703 * 119.58155 * 18.94837 * 12 11 9 14 14 C 1.38654 * 119.49885 * 180.02562 * 13 12 11 15 15 C 1.38353 * 118.66578 * 359.72488 * 14 13 12 16 16 C 1.40597 * 119.13207 * 0.53350 * 15 14 13 17 17 C 1.41346 * 119.78200 * 179.72923 * 16 15 14 18 18 H 1.08000 * 119.99622 * 7.00235 * 17 16 15 19 19 C 1.40024 * 119.99818 * 187.00431 * 17 16 15 20 20 N 1.30740 * 119.99814 * 181.90660 * 19 17 16 21 21 Si 1.86797 * 120.00331 * 1.90544 * 19 17 16 22 22 H 1.48499 * 109.47090 * 179.97438 * 21 19 17 23 23 H 1.48500 * 109.47238 * 300.00224 * 21 19 17 24 24 H 1.48506 * 109.46836 * 59.99940 * 21 19 17 25 25 N 1.31931 * 119.57822 * 198.96091 * 12 11 9 26 26 C 1.53779 * 87.17441 * 25.38536 * 5 4 2 27 27 H 1.08998 * 109.47380 * 288.80500 * 1 2 3 28 28 H 1.09002 * 109.46915 * 48.80564 * 1 2 3 29 29 H 1.08997 * 109.46983 * 168.80673 * 1 2 3 30 30 H 1.09004 * 109.47032 * 191.19478 * 3 2 1 31 31 H 1.09001 * 109.46975 * 311.19519 * 3 2 1 32 32 H 1.09004 * 109.47306 * 71.19208 * 3 2 1 33 33 H 1.08997 * 113.62112 * 334.56867 * 4 2 1 34 34 H 1.09000 * 113.61228 * 203.66199 * 4 2 1 35 35 H 1.09007 * 113.60906 * 270.80043 * 5 4 2 36 36 H 0.96995 * 119.99986 * 336.52425 * 6 5 4 37 37 H 0.96991 * 120.00352 * 5.61391 * 11 9 7 38 38 H 1.08008 * 120.25509 * 359.97438 * 13 12 11 39 39 H 1.07990 * 120.66846 * 180.02562 * 14 13 12 40 40 H 1.07993 * 120.43148 * 180.28291 * 15 14 13 41 41 H 0.97007 * 120.00076 * 354.82632 * 20 19 17 42 42 H 1.09000 * 113.61116 * 89.15785 * 26 5 4 43 43 H 1.08993 * 113.62014 * 220.05998 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 6 2.1460 -0.9280 1.0603 5 6 2.0930 -2.0426 0.0021 6 7 3.2740 -2.9094 0.0030 7 6 3.1928 -4.1595 -0.4942 8 8 2.1415 -4.5669 -0.9430 9 6 4.3971 -5.0431 -0.4938 10 8 5.4486 -4.6354 -0.0454 11 7 4.3157 -6.2933 -0.9905 12 6 5.4022 -7.1557 -0.8848 13 6 6.4027 -6.8927 0.0540 14 6 7.4851 -7.7531 0.1576 15 6 7.5375 -8.8569 -0.6749 16 6 6.5019 -9.0639 -1.6030 17 6 6.5444 -10.1840 -2.4642 18 1 7.3076 -10.9369 -2.3334 19 6 5.5971 -10.3173 -3.4867 20 7 5.6136 -11.3717 -4.2596 21 14 4.3099 -8.9888 -3.7466 22 1 3.4326 -9.3654 -4.8840 23 1 3.4915 -8.8450 -2.5158 24 1 4.9830 -7.6995 -4.0468 25 7 5.4746 -8.2115 -1.6726 26 6 2.1448 -0.9318 -1.0602 27 1 -0.3634 0.3313 0.9728 28 1 -0.3633 0.6769 -0.7733 29 1 -0.3633 -1.0081 -0.1995 30 1 3.1943 1.3532 -0.1995 31 1 1.6415 2.0075 -0.7733 32 1 1.9599 1.8734 0.9728 33 1 1.4945 -1.1068 1.9157 34 1 3.1590 -0.6486 1.3496 35 1 1.1574 -2.6019 0.0036 36 1 4.1144 -2.5836 0.3613 37 1 3.4998 -6.5918 -1.4216 38 1 6.3342 -6.0252 0.6938 39 1 8.2690 -7.5681 0.8769 40 1 8.3650 -9.5482 -0.6154 41 1 6.3259 -12.0246 -4.1742 42 1 3.1575 -0.6533 -1.3516 43 1 1.4924 -1.1135 -1.9142 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890389196.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:58 Heat of formation + Delta-G solvation = -45.245680 kcal Electronic energy + Delta-G solvation = -25815.545910 eV Core-core repulsion = 22053.123846 eV Total energy + Delta-G solvation = -3762.422063 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.32839 -41.19033 -40.19681 -39.29483 -36.62476 -35.56464 -34.99848 -33.05902 -31.58323 -30.85157 -28.26399 -27.62583 -26.75043 -26.59131 -23.92202 -23.63251 -22.34275 -21.51449 -20.58819 -19.92647 -19.07570 -18.49424 -17.86215 -17.37263 -17.00748 -16.97475 -16.34938 -15.95156 -15.72361 -15.52510 -15.39831 -15.04055 -14.81825 -14.49966 -14.28655 -14.11502 -13.83457 -13.76839 -13.69126 -13.33785 -12.82158 -12.79671 -12.56041 -12.48668 -12.31840 -12.31536 -11.88535 -11.77358 -11.63694 -11.28962 -11.19465 -11.07704 -10.70130 -10.46232 -10.25203 -9.80679 -9.33383 -9.30207 -6.85534 -0.10927 0.66068 0.78695 1.04398 1.55282 1.65088 1.94583 1.99838 2.38781 2.39646 2.62834 3.18971 3.46281 3.50928 3.51516 3.79868 3.82188 4.00331 4.29552 4.33430 4.45730 4.55897 4.62982 4.65224 4.65975 4.75252 4.85099 4.88718 4.92255 4.95742 5.06988 5.17742 5.21006 5.24296 5.30224 5.33313 5.37227 5.45438 5.55177 5.63402 5.65067 5.84495 5.96899 6.18746 6.32731 6.50975 6.63474 6.76306 7.42303 7.93128 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023179 B = 0.002891 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.705342 B = 9684.339501 C =10612.783903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.079 4.079 3 C -0.133 4.133 4 C -0.126 4.126 5 C 0.108 3.892 6 N -0.670 5.670 7 C 0.521 3.479 8 O -0.537 6.537 9 C 0.512 3.488 10 O -0.501 6.501 11 N -0.631 5.631 12 C 0.368 3.632 13 C -0.299 4.299 14 C -0.024 4.024 15 C -0.282 4.282 16 C 0.256 3.744 17 C -0.503 4.503 18 H 0.074 0.926 19 C 0.018 3.982 20 N -0.827 5.827 21 Si 1.183 2.817 22 H -0.329 1.329 23 H -0.278 1.278 24 H -0.301 1.301 25 N -0.614 5.614 26 C -0.146 4.146 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.422 0.578 37 H 0.422 0.578 38 H 0.156 0.844 39 H 0.152 0.848 40 H 0.120 0.880 41 H 0.283 0.717 42 H 0.091 0.909 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.713 24.580 10.717 27.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.080 4.080 3 C -0.190 4.190 4 C -0.164 4.164 5 C 0.004 3.996 6 N -0.323 5.323 7 C 0.300 3.700 8 O -0.414 6.414 9 C 0.294 3.706 10 O -0.376 6.376 11 N -0.277 5.277 12 C 0.138 3.862 13 C -0.324 4.324 14 C -0.048 4.048 15 C -0.304 4.304 16 C 0.131 3.869 17 C -0.536 4.536 18 H 0.092 0.908 19 C -0.200 4.200 20 N -0.450 5.450 21 Si 1.017 2.983 22 H -0.262 1.262 23 H -0.206 1.206 24 H -0.230 1.230 25 N -0.340 5.340 26 C -0.184 4.184 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.104 0.896 34 H 0.120 0.880 35 H 0.126 0.874 36 H 0.261 0.739 37 H 0.260 0.740 38 H 0.173 0.827 39 H 0.170 0.830 40 H 0.139 0.861 41 H 0.094 0.906 42 H 0.109 0.891 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.618 24.732 9.267 28.108 hybrid contribution 2.333 -1.239 0.993 2.822 sum -7.285 23.493 10.260 26.651 Atomic orbital electron populations 1.21664 0.92531 1.02034 1.02791 1.21628 0.95983 0.94874 0.95492 1.21701 1.00575 0.94298 1.02428 1.23490 1.03087 0.93083 0.96769 1.22948 0.88280 0.88977 0.99349 1.45760 1.15790 1.11328 1.59394 1.19590 0.87103 0.83660 0.79596 1.90784 1.30223 1.74504 1.45889 1.20474 0.89602 0.81829 0.78708 1.90657 1.29694 1.73184 1.44019 1.43037 1.16383 1.12020 1.56306 1.18390 0.87795 0.88285 0.91760 1.21872 0.98143 1.06700 1.05644 1.21385 0.96414 0.91360 0.95653 1.21849 1.02046 1.02692 1.03848 1.18494 0.86877 0.90087 0.91436 1.20736 1.14387 1.05798 1.12707 0.90764 1.28364 1.00912 1.00007 0.90700 1.70654 1.30856 1.08160 1.35342 0.81426 0.72928 0.70557 0.73398 1.26221 1.20587 1.22993 1.65873 1.28805 1.09263 1.30017 1.23683 1.02170 0.95198 0.97357 0.91195 0.91793 0.92892 0.92262 0.92278 0.91569 0.89563 0.87983 0.87432 0.73931 0.74045 0.82693 0.82993 0.86147 0.90596 0.89086 0.91432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.27 9.07 71.98 0.65 -0.62 16 2 C -0.08 -0.79 1.39 -51.60 -0.07 -0.86 16 3 C -0.13 -1.08 9.20 71.98 0.66 -0.42 16 4 C -0.13 -1.27 6.98 31.12 0.22 -1.05 16 5 C 0.11 1.69 3.86 45.52 0.18 1.86 16 6 N -0.67 -12.90 5.35 -441.45 -2.36 -15.27 16 7 C 0.52 14.21 7.89 87.24 0.69 14.90 16 8 O -0.54 -17.09 16.10 -3.26 -0.05 -17.14 16 9 C 0.51 16.62 7.73 87.24 0.67 17.29 16 10 O -0.50 -16.76 13.27 -3.29 -0.04 -16.80 16 11 N -0.63 -24.19 5.40 -309.70 -1.67 -25.86 16 12 C 0.37 16.49 7.50 133.30 1.00 17.49 16 13 C -0.30 -12.27 8.83 22.72 0.20 -12.07 16 14 C -0.02 -0.95 10.15 22.40 0.23 -0.72 16 15 C -0.28 -12.80 9.83 22.87 0.22 -12.57 16 16 C 0.26 13.41 6.39 40.20 0.26 13.67 16 17 C -0.50 -28.01 9.58 23.47 0.22 -27.79 16 18 H 0.07 4.14 8.05 -2.91 -0.02 4.12 16 19 C 0.02 0.98 5.52 85.29 0.47 1.45 16 20 N -0.83 -46.35 13.65 21.84 0.30 -46.05 16 21 Si 1.18 59.14 25.53 68.60 1.75 60.90 16 22 H -0.33 -16.11 7.11 99.48 0.71 -15.40 16 23 H -0.28 -13.48 6.70 99.48 0.67 -12.81 16 24 H -0.30 -15.23 7.10 99.48 0.71 -14.52 16 25 N -0.61 -31.19 4.59 -186.43 -0.85 -32.04 16 26 C -0.15 -2.00 7.01 31.18 0.22 -1.78 16 27 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.05 0.59 7.34 -2.39 -0.02 0.58 16 30 H 0.06 0.48 7.96 -2.38 -0.02 0.46 16 31 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.09 0.77 8.10 -2.39 -0.02 0.75 16 34 H 0.10 0.81 8.07 -2.39 -0.02 0.79 16 35 H 0.11 1.99 7.02 -2.38 -0.02 1.97 16 36 H 0.42 6.70 8.18 -92.71 -0.76 5.95 16 37 H 0.42 15.79 8.30 -92.72 -0.77 15.02 16 38 H 0.16 5.86 5.33 -3.17 -0.02 5.84 16 39 H 0.15 4.64 8.06 -2.92 -0.02 4.61 16 40 H 0.12 5.05 8.06 -2.91 -0.02 5.03 16 41 H 0.28 15.24 8.72 -92.70 -0.81 14.43 16 42 H 0.09 1.21 7.98 -2.39 -0.02 1.19 16 43 H 0.07 1.05 8.10 -2.39 -0.02 1.03 16 Total: -1.00 -64.82 357.56 2.33 -62.48 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: -0.55 Total: 21.01 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: 5.82 Total: 8.77 kcal Atomic # 7 Polarization: -114.62 SS G_CDS: -4.59 Total: -119.22 kcal Atomic # 8 Polarization: -33.85 SS G_CDS: -0.10 Total: -33.94 kcal Atomic # 14 Polarization: 59.14 SS G_CDS: 1.75 Total: 60.90 kcal Total: -64.82 2.33 -62.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890389196.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.236 kcal (2) G-P(sol) polarization free energy of solvation -64.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds