Wall clock time and date at job start Tue Mar 31 2020 11:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53779 * 113.61246 * 2 1 4 4 C 1.53784 * 87.07878 * 219.93472 * 3 2 1 5 5 C 1.53005 * 113.61182 * 139.98354 * 4 3 2 6 6 N 1.46497 * 109.46902 * 176.53319 * 5 4 3 7 7 C 1.34781 * 119.99717 * 180.02562 * 6 5 4 8 8 O 1.21351 * 119.99956 * 359.97438 * 7 6 5 9 9 C 1.49371 * 119.99687 * 179.97438 * 7 6 5 10 10 O 1.21356 * 119.99897 * 359.97438 * 9 7 6 11 11 N 1.34780 * 119.99629 * 179.97438 * 9 7 6 12 12 C 1.39108 * 119.99722 * 185.60645 * 11 9 7 13 13 C 1.39714 * 119.58165 * 18.95367 * 12 11 9 14 14 C 1.38649 * 119.49730 * 180.02562 * 13 12 11 15 15 C 1.38349 * 118.66902 * 359.73389 * 14 13 12 16 16 C 1.40600 * 119.13685 * 0.48805 * 15 14 13 17 17 C 1.41327 * 119.78591 * 179.78799 * 16 15 14 18 18 H 1.08005 * 120.00454 * 6.99433 * 17 16 15 19 19 C 1.40033 * 120.00025 * 187.00152 * 17 16 15 20 20 N 1.30747 * 119.99781 * 181.90866 * 19 17 16 21 21 Si 1.86802 * 119.99917 * 1.89854 * 19 17 16 22 22 H 1.48500 * 109.47138 * 180.02562 * 21 19 17 23 23 H 1.48500 * 109.46978 * 300.00628 * 21 19 17 24 24 H 1.48499 * 109.46608 * 60.00299 * 21 19 17 25 25 N 1.31937 * 119.58090 * 198.92422 * 12 11 9 26 26 C 1.53785 * 87.17175 * 25.39287 * 4 3 2 27 27 H 1.09003 * 109.47657 * 59.99684 * 1 2 3 28 28 H 1.09004 * 109.47115 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47201 * 299.99833 * 1 2 3 30 30 H 1.08998 * 112.84757 * 131.19644 * 2 1 3 31 31 H 1.09006 * 113.61237 * 105.39160 * 3 2 1 32 32 H 1.08994 * 113.61613 * 334.48232 * 3 2 1 33 33 H 1.08995 * 113.61788 * 270.80124 * 4 3 2 34 34 H 1.08998 * 109.46898 * 56.52913 * 5 4 3 35 35 H 1.09005 * 109.46674 * 296.52977 * 5 4 3 36 36 H 0.97003 * 120.00078 * 359.97438 * 6 5 4 37 37 H 0.97001 * 119.99938 * 5.61280 * 11 9 7 38 38 H 1.08001 * 120.25049 * 359.97215 * 13 12 11 39 39 H 1.07996 * 120.66580 * 179.97438 * 14 13 12 40 40 H 1.07993 * 120.43306 * 180.26630 * 15 14 13 41 41 H 0.96993 * 120.00177 * 354.82034 * 20 19 17 42 42 H 1.09004 * 113.61249 * 89.15672 * 26 4 3 43 43 H 1.08993 * 113.60895 * 220.05700 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1460 1.4090 0.0000 4 6 3.1936 0.8655 -0.9859 5 6 3.5489 1.8464 -2.1051 6 7 4.6084 1.2732 -2.9387 7 6 5.0851 1.9649 -3.9927 8 8 4.6363 3.0623 -4.2514 9 6 6.1658 1.3806 -4.8423 10 8 6.6148 0.2833 -4.5833 11 7 6.6421 2.0721 -5.8966 12 6 7.5637 1.4827 -6.7559 13 6 7.6957 0.0920 -6.7770 14 6 8.6152 -0.4936 -7.6338 15 6 9.3750 0.3240 -8.4513 16 6 9.1989 1.7171 -8.3802 17 6 9.9710 2.5654 -9.2058 18 1 10.6104 2.1427 -9.9667 19 6 9.9072 3.9541 -9.0372 20 7 10.5928 4.7404 -9.8254 21 14 8.8424 4.6830 -7.6865 22 1 8.9469 6.1640 -7.7188 23 1 7.4286 4.2821 -7.9001 24 1 9.3050 4.1823 -6.3672 25 7 8.3016 2.2441 -7.5411 26 6 2.1498 -0.1863 -1.3969 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.9532 -0.6616 0.7558 31 1 2.5638 1.7029 0.9630 32 1 1.4951 2.1701 -0.4302 33 1 4.0723 0.4419 -0.4997 34 1 3.8957 2.7838 -1.6702 35 1 2.6666 2.0343 -2.7171 36 1 4.9673 0.3961 -2.7317 37 1 6.3424 2.9808 -6.0561 38 1 7.0868 -0.5222 -6.1302 39 1 8.7331 -1.5666 -7.6652 40 1 10.0965 -0.1021 -9.1325 41 1 11.2030 4.3615 -10.4772 42 1 1.4999 0.1379 -2.2097 43 1 2.5706 -1.1784 -1.5601 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890395957.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:56 Heat of formation + Delta-G solvation = -28.447610 kcal Electronic energy + Delta-G solvation = -25473.914067 eV Core-core repulsion = 21712.220422 eV Total energy + Delta-G solvation = -3761.693644 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.91087 -39.85199 -38.98419 -37.93039 -35.36897 -34.42543 -33.52323 -31.20821 -30.81025 -29.74620 -27.50590 -26.10631 -25.57199 -24.54052 -21.98448 -21.75758 -21.38134 -20.16103 -19.67564 -18.78114 -18.17340 -17.03611 -16.42319 -16.28040 -15.93366 -15.58383 -15.18446 -14.84143 -14.53703 -14.27711 -14.00067 -13.89128 -13.61163 -13.49080 -13.10797 -12.90228 -12.81563 -12.65761 -12.27249 -12.00855 -11.92865 -11.75126 -11.51216 -11.05472 -10.96088 -10.80586 -10.59226 -10.56079 -10.41623 -10.10459 -9.67486 -9.41876 -9.30811 -9.18386 -8.64091 -7.85769 -7.50905 -7.28920 -4.83783 1.27786 2.27043 2.48542 2.57060 3.30179 3.54483 3.60237 3.66911 3.97966 4.10187 4.15567 4.24580 4.34372 4.37260 4.48335 4.59904 4.78862 4.95170 5.08179 5.18724 5.31558 5.35728 5.38346 5.40478 5.45930 5.54521 5.64387 5.71204 5.74809 5.87965 5.94821 6.01912 6.13179 6.31744 6.36919 6.44091 6.86360 7.00398 7.10753 7.36898 7.42508 7.48199 7.65053 7.72864 8.01422 8.09034 8.28393 8.57993 9.31540 9.96307 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025933 B = 0.002623 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.426051 B =10670.246992 C =11559.049890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C -0.126 4.126 4 C -0.127 4.127 5 C 0.128 3.872 6 N -0.700 5.700 7 C 0.512 3.488 8 O -0.515 6.515 9 C 0.508 3.492 10 O -0.496 6.496 11 N -0.623 5.623 12 C 0.382 3.618 13 C -0.309 4.309 14 C -0.034 4.034 15 C -0.271 4.271 16 C 0.272 3.728 17 C -0.472 4.472 18 H 0.085 0.915 19 C 0.043 3.957 20 N -0.802 5.802 21 Si 1.154 2.846 22 H -0.330 1.330 23 H -0.283 1.283 24 H -0.293 1.293 25 N -0.595 5.595 26 C -0.134 4.134 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.414 0.586 37 H 0.420 0.580 38 H 0.138 0.862 39 H 0.108 0.892 40 H 0.107 0.893 41 H 0.284 0.716 42 H 0.085 0.915 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.279 -7.646 17.828 25.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.134 4.134 3 C -0.164 4.164 4 C -0.145 4.145 5 C 0.005 3.995 6 N -0.354 5.354 7 C 0.292 3.708 8 O -0.390 6.390 9 C 0.289 3.711 10 O -0.370 6.370 11 N -0.270 5.270 12 C 0.152 3.848 13 C -0.334 4.334 14 C -0.058 4.058 15 C -0.293 4.293 16 C 0.148 3.852 17 C -0.504 4.504 18 H 0.103 0.897 19 C -0.178 4.178 20 N -0.424 5.424 21 Si 0.989 3.011 22 H -0.263 1.263 23 H -0.211 1.211 24 H -0.221 1.221 25 N -0.320 5.320 26 C -0.171 4.171 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.107 0.893 31 H 0.089 0.911 32 H 0.104 0.896 33 H 0.117 0.883 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.250 0.750 37 H 0.258 0.742 38 H 0.156 0.844 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.095 0.905 42 H 0.103 0.897 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.839 -5.347 18.364 25.483 hybrid contribution 0.925 -2.404 -0.896 2.727 sum -15.914 -7.752 17.468 24.869 Atomic orbital electron populations 1.21724 0.94723 1.01739 1.01844 1.22483 0.95739 0.97379 0.97841 1.22976 0.97260 0.97037 0.99097 1.22800 0.98170 0.97154 0.96418 1.21520 0.90151 0.96697 0.91158 1.45705 1.38959 1.22295 1.28439 1.20034 0.83350 0.85527 0.81887 1.90786 1.58811 1.19516 1.69885 1.19957 0.83655 0.85872 0.81647 1.90689 1.57756 1.19621 1.68902 1.42946 1.40590 1.18634 1.24788 1.18029 0.88780 0.89015 0.88972 1.21466 1.09316 0.92715 1.09939 1.20918 0.93541 0.98179 0.93211 1.21649 1.06803 0.94307 1.06543 1.18278 0.87742 0.90813 0.88349 1.20752 1.21435 0.93239 1.14943 0.89692 1.27792 0.96581 0.94079 0.99383 1.70644 1.17349 1.40015 1.14357 0.81834 0.76102 0.69975 0.73172 1.26336 1.21072 1.22141 1.65961 1.13454 1.37484 1.15105 1.23185 0.97619 0.99209 0.97084 0.92501 0.92663 0.92553 0.89272 0.91096 0.89581 0.88290 0.90738 0.90735 0.75006 0.74248 0.84417 0.87356 0.87450 0.90504 0.89689 0.91179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.72 9.71 37.16 0.36 -0.36 16 2 C -0.12 -0.62 4.36 -89.72 -0.39 -1.01 16 3 C -0.13 -0.68 7.21 -25.92 -0.19 -0.87 16 4 C -0.13 -0.78 3.75 -89.80 -0.34 -1.11 16 5 C 0.13 1.08 5.50 -4.04 -0.02 1.06 16 6 N -0.70 -7.41 5.55 -60.75 -0.34 -7.75 16 7 C 0.51 7.39 7.89 -11.62 -0.09 7.29 16 8 O -0.51 -8.49 16.48 5.50 0.09 -8.39 16 9 C 0.51 8.71 7.73 -11.62 -0.09 8.62 16 10 O -0.50 -8.94 13.28 5.49 0.07 -8.87 16 11 N -0.62 -12.32 5.39 -11.83 -0.06 -12.38 16 12 C 0.38 8.84 7.50 -155.09 -1.16 7.67 16 13 C -0.31 -6.78 8.83 -38.88 -0.34 -7.12 16 14 C -0.03 -0.73 10.15 -39.39 -0.40 -1.13 16 15 C -0.27 -6.33 9.83 -38.65 -0.38 -6.71 16 16 C 0.27 7.11 6.39 -85.00 -0.54 6.57 16 17 C -0.47 -12.79 9.58 -37.74 -0.36 -13.15 16 18 H 0.09 2.28 8.05 -52.48 -0.42 1.86 16 19 C 0.04 1.18 5.52 -17.34 -0.10 1.08 16 20 N -0.80 -21.83 13.65 55.55 0.76 -21.07 16 21 Si 1.15 28.63 25.54 -169.99 -4.34 24.29 16 22 H -0.33 -8.10 7.11 56.52 0.40 -7.70 16 23 H -0.28 -6.84 6.70 56.52 0.38 -6.46 16 24 H -0.29 -7.36 7.10 56.52 0.40 -6.96 16 25 N -0.59 -15.20 4.59 -10.28 -0.05 -15.25 16 26 C -0.13 -0.80 7.20 -25.83 -0.19 -0.99 16 27 H 0.06 0.30 7.96 -51.93 -0.41 -0.12 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 0.46 8.06 -51.93 -0.42 0.04 16 33 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.65 7.88 -51.93 -0.41 0.25 16 36 H 0.41 3.85 7.94 -40.82 -0.32 3.53 16 37 H 0.42 7.97 8.31 -40.82 -0.34 7.63 16 38 H 0.14 2.86 5.34 -52.50 -0.28 2.58 16 39 H 0.11 1.93 8.06 -52.49 -0.42 1.50 16 40 H 0.11 2.32 8.06 -52.49 -0.42 1.90 16 41 H 0.28 7.35 8.72 -40.82 -0.36 6.99 16 42 H 0.08 0.54 7.75 -51.93 -0.40 0.14 16 43 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 359.63 15.07 5.42 5.42 Total: -1.00 -30.29 359.63 -8.67 -38.96 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -5.99 Total: 5.21 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -4.23 Total: -0.16 kcal Atomic # 7 Polarization: -56.76 SS G_CDS: 0.31 Total: -56.45 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: 0.16 Total: -17.26 kcal Atomic # 14 Polarization: 28.63 SS G_CDS: -4.34 Total: 24.29 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.29 -8.67 -38.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890395957.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.512 kcal (2) G-P(sol) polarization free energy of solvation -30.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds