Wall clock time and date at job start Tue Mar 31 2020 12:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38048 * 126.29128 * 2 1 4 4 C 1.47430 * 126.41483 * 359.97438 * 3 2 1 5 5 O 1.21603 * 120.00081 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99963 * 180.02562 * 4 3 2 7 7 C 1.46498 * 119.99828 * 180.27989 * 6 4 3 8 8 C 1.52996 * 109.47059 * 179.72339 * 7 6 4 9 9 C 1.53003 * 109.47301 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47008 * 179.97438 * 9 8 7 11 11 C 1.34518 * 125.78505 * 89.72170 * 10 9 8 12 12 C 1.41389 * 106.83822 * 179.88837 * 11 10 9 13 13 C 1.34515 * 106.83835 * 0.36816 * 12 11 10 14 14 O 1.34298 * 108.42391 * 359.77354 * 13 12 11 15 15 C 1.41282 * 107.17080 * 180.24676 * 3 2 1 16 16 N 1.30456 * 108.02295 * 359.61396 * 15 3 2 17 17 N 1.34257 * 126.28979 * 180.02562 * 2 1 3 18 18 C 1.46497 * 125.75340 * 359.95991 * 17 2 1 19 19 C 1.50700 * 109.47167 * 89.99982 * 18 17 2 20 20 H 1.07997 * 119.99609 * 0.02562 * 19 18 17 21 21 C 1.37876 * 119.99998 * 179.97438 * 19 18 17 22 22 N 1.31516 * 119.99860 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00303 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.46970 * 59.99952 * 23 21 19 25 25 H 1.48497 * 109.47398 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47006 * 300.00444 * 23 21 19 27 27 H 1.08997 * 109.46976 * 89.97495 * 1 2 3 28 28 H 1.08988 * 109.46985 * 209.97714 * 1 2 3 29 29 H 1.09003 * 109.47092 * 329.98032 * 1 2 3 30 30 H 0.97001 * 119.99727 * 359.97438 * 6 4 3 31 31 H 1.09004 * 109.46963 * 299.72135 * 7 6 4 32 32 H 1.08994 * 109.47567 * 59.72287 * 7 6 4 33 33 H 1.09004 * 109.47066 * 299.99732 * 8 7 6 34 34 H 1.09000 * 109.47665 * 59.99541 * 8 7 6 35 35 H 1.08990 * 109.47021 * 299.99845 * 9 8 7 36 36 H 1.09002 * 109.46620 * 60.00037 * 9 8 7 37 37 H 1.07999 * 126.58192 * 0.02562 * 11 10 9 38 38 H 1.07995 * 126.58039 * 180.16240 * 12 11 10 39 39 H 1.08003 * 125.78640 * 179.75453 * 13 12 11 40 40 H 1.07998 * 125.99190 * 179.73259 * 15 3 2 41 41 H 1.09002 * 109.46712 * 209.99826 * 18 17 2 42 42 H 1.08998 * 109.47388 * 329.99578 * 18 17 2 43 43 H 0.97004 * 120.00119 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8859 2.5203 -0.0005 5 8 0.6996 2.7878 -0.0006 6 7 2.8000 3.5107 -0.0010 7 6 2.3645 4.9095 0.0047 8 6 3.5901 5.8252 0.0098 9 6 3.1353 7.2861 0.0151 10 6 4.3426 8.1880 0.0208 11 6 4.9777 8.6590 -1.0674 12 6 6.0454 9.4614 -0.6033 13 6 6.0037 9.4260 0.7408 14 8 4.9704 8.6533 1.1132 15 6 3.6590 0.6499 -0.0058 16 7 3.6341 -0.6544 -0.0007 17 7 2.3017 -1.0822 -0.0005 18 6 1.8500 -2.4758 -0.0003 19 6 1.6944 -2.9536 -1.4210 20 1 1.9107 -2.2860 -2.2419 21 6 1.2768 -4.2433 -1.6727 22 7 1.0139 -5.0563 -0.6730 23 14 1.0845 -4.8359 -3.4338 24 1 2.3904 -4.7384 -4.1342 25 1 0.6278 -6.2488 -3.4335 26 1 0.0832 -3.9915 -4.1336 27 1 -0.3633 0.0004 -1.0276 28 1 -0.3633 -0.8901 0.5134 29 1 -0.3633 0.8898 0.5142 30 1 3.7462 3.2973 -0.0006 31 1 1.7667 5.1075 -0.8851 32 1 1.7650 5.0998 0.8949 33 1 4.1879 5.6272 0.8996 34 1 4.1897 5.6349 -0.8803 35 1 2.5379 7.4838 -0.8748 36 1 2.5356 7.4766 0.9052 37 1 4.7201 8.4638 -2.0979 38 1 6.7595 9.9969 -1.2112 39 1 6.6858 9.9328 1.4073 40 1 4.5449 1.2676 -0.0114 41 1 2.5850 -3.0958 0.5131 42 1 0.8917 -2.5471 0.5141 43 1 0.7205 -5.9638 -0.8500 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893040220.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:05 Heat of formation + Delta-G solvation = 30.747349 kcal Electronic energy + Delta-G solvation = -24735.007089 eV Core-core repulsion = 20975.880331 eV Total energy + Delta-G solvation = -3759.126758 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.86665 -40.76860 -38.85259 -36.07066 -33.96542 -33.63211 -33.01159 -32.04529 -31.14564 -29.67924 -27.51588 -26.70001 -25.64315 -23.45017 -22.38488 -22.06646 -21.74801 -20.69828 -19.77705 -18.96080 -17.67837 -17.08022 -16.75512 -16.26329 -15.93567 -15.78212 -15.13579 -14.84706 -14.63934 -14.44281 -13.96802 -13.82680 -13.20255 -13.14554 -13.09033 -12.99889 -12.70852 -12.55311 -12.42807 -12.20940 -12.08068 -11.79589 -11.63537 -11.46286 -11.18119 -11.12331 -10.86864 -10.36952 -10.24063 -10.17605 -9.95184 -9.41082 -8.95951 -8.77243 -8.70404 -8.58294 -7.90299 -6.33213 -4.41113 1.40352 2.20197 2.29487 2.66275 2.80407 3.18780 3.20218 3.24216 3.29499 3.58279 3.93479 4.24500 4.26255 4.55794 4.69221 4.75615 4.82032 4.87788 5.00916 5.13124 5.19370 5.23191 5.28163 5.47083 5.50413 5.59597 5.61377 5.75586 5.79705 5.81679 5.87518 5.98211 6.13927 6.18370 6.42806 6.55483 6.63384 6.80697 6.82145 6.91229 7.16652 7.56221 7.74218 7.77563 7.80162 8.38492 8.61557 8.64715 9.25646 10.74920 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027930 B = 0.001957 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.271592 B =14304.493479 C =14485.686509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.165 3.835 3 C -0.333 4.333 4 C 0.604 3.396 5 O -0.557 6.557 6 N -0.736 5.736 7 C 0.124 3.876 8 C -0.129 4.129 9 C -0.037 4.037 10 C -0.007 4.007 11 C -0.212 4.212 12 C -0.214 4.214 13 C -0.046 4.046 14 O -0.176 6.176 15 C 0.057 3.943 16 N -0.296 5.296 17 N -0.314 5.314 18 C 0.251 3.749 19 C -0.540 4.540 20 H 0.065 0.935 21 C 0.067 3.933 22 N -0.890 5.890 23 Si 0.908 3.092 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.273 1.273 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.398 0.602 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.148 0.852 38 H 0.147 0.853 39 H 0.201 0.799 40 H 0.175 0.825 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.546 25.507 2.334 26.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.028 3.972 3 C -0.349 4.349 4 C 0.394 3.606 5 O -0.436 6.436 6 N -0.389 5.389 7 C 0.000 4.000 8 C -0.167 4.167 9 C -0.075 4.075 10 C -0.057 4.057 11 C -0.231 4.231 12 C -0.233 4.233 13 C -0.113 4.113 14 O -0.072 6.072 15 C -0.130 4.130 16 N -0.116 5.116 17 N -0.091 5.091 18 C 0.134 3.866 19 C -0.579 4.579 20 H 0.083 0.917 21 C -0.137 4.137 22 N -0.527 5.527 23 Si 0.735 3.265 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.198 1.198 27 H 0.102 0.898 28 H 0.091 0.909 29 H 0.112 0.888 30 H 0.232 0.768 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.116 0.884 36 H 0.104 0.896 37 H 0.165 0.835 38 H 0.165 0.835 39 H 0.218 0.782 40 H 0.192 0.808 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.224 24.168 2.689 25.101 hybrid contribution 0.338 0.341 -1.188 1.282 sum 6.562 24.510 1.500 25.417 Atomic orbital electron populations 1.20568 0.86808 1.03766 1.03920 1.21486 0.94969 0.86544 0.94225 1.19676 0.93130 0.92524 1.29566 1.17302 0.84982 0.83913 0.74387 1.90690 1.16723 1.84501 1.51671 1.45692 1.09833 1.05428 1.77905 1.21202 0.95960 0.80295 1.02499 1.21812 0.98240 0.92930 1.03696 1.20043 0.91433 0.91194 1.04798 1.22446 0.98122 1.01056 0.84118 1.21637 0.98595 1.03253 0.99620 1.21857 1.01910 1.04694 0.94835 1.24031 0.92403 0.98656 0.96233 1.84027 1.36303 1.51790 1.35106 1.23715 0.96330 0.92627 1.00296 1.77141 0.98638 1.12278 1.23542 1.49365 1.02474 1.08303 1.48925 1.19851 0.96415 0.70921 0.99429 1.21205 1.47532 0.98141 0.90987 0.91723 1.24923 0.94446 0.95987 0.98306 1.69905 1.44432 1.07190 1.31170 0.86375 0.78873 0.77743 0.83492 1.19915 1.20872 1.19843 0.89846 0.90887 0.88823 0.76784 0.91456 0.91498 0.90757 0.90623 0.88355 0.89555 0.83450 0.83535 0.78198 0.80798 0.92519 0.92543 0.92059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.68 9.57 36.01 0.34 -1.34 16 2 C 0.17 3.37 7.01 -81.60 -0.57 2.80 16 3 C -0.33 -6.09 6.13 -105.07 -0.64 -6.73 16 4 C 0.60 9.92 7.81 -12.52 -0.10 9.82 16 5 O -0.56 -10.54 14.84 5.27 0.08 -10.46 16 6 N -0.74 -8.71 5.55 -61.39 -0.34 -9.05 16 7 C 0.12 1.18 5.67 -4.04 -0.02 1.16 16 8 C -0.13 -0.90 5.31 -26.73 -0.14 -1.04 16 9 C -0.04 -0.24 5.75 -27.88 -0.16 -0.40 16 10 C -0.01 -0.06 6.58 -35.62 -0.23 -0.29 16 11 C -0.21 -1.71 10.81 -39.70 -0.43 -2.14 16 12 C -0.21 -1.59 10.91 -39.70 -0.43 -2.02 16 13 C -0.05 -0.33 12.09 29.42 0.36 0.03 16 14 O -0.18 -1.62 10.65 5.72 0.06 -1.56 16 15 C 0.06 0.99 11.50 -16.98 -0.20 0.80 16 16 N -0.30 -6.37 12.50 30.86 0.39 -5.99 16 17 N -0.31 -7.11 3.56 -57.77 -0.21 -7.32 16 18 C 0.25 6.26 5.97 -5.20 -0.03 6.23 16 19 C -0.54 -14.58 9.39 -34.44 -0.32 -14.90 16 20 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 21 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 22 N -0.89 -24.60 13.29 55.43 0.74 -23.86 16 23 Si 0.91 20.83 29.54 -169.99 -5.02 15.81 16 24 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 28 H 0.07 1.29 7.05 -51.94 -0.37 0.93 16 29 H 0.09 1.62 6.50 -51.93 -0.34 1.29 16 30 H 0.40 3.79 7.43 -40.82 -0.30 3.48 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 39 H 0.20 0.70 8.06 -52.48 -0.42 0.28 16 40 H 0.18 2.14 7.50 -52.49 -0.39 1.75 16 41 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 42 H 0.06 1.40 7.02 -51.93 -0.36 1.03 16 43 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 372.12 15.07 5.61 5.61 Total: -1.00 -32.60 372.12 -7.34 -39.94 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: -5.96 Total: 3.20 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -2.68 Total: -6.31 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: 0.58 Total: -46.22 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.14 Total: -12.01 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.60 -7.34 -39.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893040220.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.683 kcal (2) G-P(sol) polarization free energy of solvation -32.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds