Wall clock time and date at job start Tue Mar 31 2020 12:10:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38048 * 126.29128 * 2 1 4 4 C 1.47430 * 126.41483 * 359.97438 * 3 2 1 5 5 O 1.21603 * 120.00081 * 0.02562 * 4 3 2 6 6 N 1.34777 * 119.99963 * 180.02562 * 4 3 2 7 7 C 1.46498 * 119.99828 * 180.27989 * 6 4 3 8 8 C 1.52996 * 109.47059 * 179.72339 * 7 6 4 9 9 C 1.53003 * 109.47301 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.47008 * 179.97438 * 9 8 7 11 11 C 1.34518 * 125.78505 * 89.72170 * 10 9 8 12 12 C 1.41389 * 106.83822 * 179.88837 * 11 10 9 13 13 C 1.34515 * 106.83835 * 0.36816 * 12 11 10 14 14 O 1.34298 * 108.42391 * 359.77354 * 13 12 11 15 15 C 1.41282 * 107.17080 * 180.24676 * 3 2 1 16 16 N 1.30456 * 108.02295 * 359.61396 * 15 3 2 17 17 N 1.34257 * 126.28979 * 180.02562 * 2 1 3 18 18 C 1.46497 * 125.75340 * 359.95991 * 17 2 1 19 19 C 1.50700 * 109.47167 * 89.99982 * 18 17 2 20 20 H 1.07997 * 119.99609 * 0.02562 * 19 18 17 21 21 C 1.37876 * 119.99998 * 179.97438 * 19 18 17 22 22 N 1.31516 * 119.99860 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00303 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.46970 * 59.99952 * 23 21 19 25 25 H 1.48497 * 109.47398 * 179.97438 * 23 21 19 26 26 H 1.48504 * 109.47006 * 300.00444 * 23 21 19 27 27 H 1.08997 * 109.46976 * 89.97495 * 1 2 3 28 28 H 1.08988 * 109.46985 * 209.97714 * 1 2 3 29 29 H 1.09003 * 109.47092 * 329.98032 * 1 2 3 30 30 H 0.97001 * 119.99727 * 359.97438 * 6 4 3 31 31 H 1.09004 * 109.46963 * 299.72135 * 7 6 4 32 32 H 1.08994 * 109.47567 * 59.72287 * 7 6 4 33 33 H 1.09004 * 109.47066 * 299.99732 * 8 7 6 34 34 H 1.09000 * 109.47665 * 59.99541 * 8 7 6 35 35 H 1.08990 * 109.47021 * 299.99845 * 9 8 7 36 36 H 1.09002 * 109.46620 * 60.00037 * 9 8 7 37 37 H 1.07999 * 126.58192 * 0.02562 * 11 10 9 38 38 H 1.07995 * 126.58039 * 180.16240 * 12 11 10 39 39 H 1.08003 * 125.78640 * 179.75453 * 13 12 11 40 40 H 1.07998 * 125.99190 * 179.73259 * 15 3 2 41 41 H 1.09002 * 109.46712 * 209.99826 * 18 17 2 42 42 H 1.08998 * 109.47388 * 329.99578 * 18 17 2 43 43 H 0.97004 * 120.00119 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8859 2.5203 -0.0005 5 8 0.6996 2.7878 -0.0006 6 7 2.8000 3.5107 -0.0010 7 6 2.3645 4.9095 0.0047 8 6 3.5901 5.8252 0.0098 9 6 3.1353 7.2861 0.0151 10 6 4.3426 8.1880 0.0208 11 6 4.9777 8.6590 -1.0674 12 6 6.0454 9.4614 -0.6033 13 6 6.0037 9.4260 0.7408 14 8 4.9704 8.6533 1.1132 15 6 3.6590 0.6499 -0.0058 16 7 3.6341 -0.6544 -0.0007 17 7 2.3017 -1.0822 -0.0005 18 6 1.8500 -2.4758 -0.0003 19 6 1.6944 -2.9536 -1.4210 20 1 1.9107 -2.2860 -2.2419 21 6 1.2768 -4.2433 -1.6727 22 7 1.0139 -5.0563 -0.6730 23 14 1.0845 -4.8359 -3.4338 24 1 2.3904 -4.7384 -4.1342 25 1 0.6278 -6.2488 -3.4335 26 1 0.0832 -3.9915 -4.1336 27 1 -0.3633 0.0004 -1.0276 28 1 -0.3633 -0.8901 0.5134 29 1 -0.3633 0.8898 0.5142 30 1 3.7462 3.2973 -0.0006 31 1 1.7667 5.1075 -0.8851 32 1 1.7650 5.0998 0.8949 33 1 4.1879 5.6272 0.8996 34 1 4.1897 5.6349 -0.8803 35 1 2.5379 7.4838 -0.8748 36 1 2.5356 7.4766 0.9052 37 1 4.7201 8.4638 -2.0979 38 1 6.7595 9.9969 -1.2112 39 1 6.6858 9.9328 1.4073 40 1 4.5449 1.2676 -0.0114 41 1 2.5850 -3.0958 0.5131 42 1 0.8917 -2.5471 0.5141 43 1 0.7205 -5.9638 -0.8500 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893040220.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:04 Heat of formation + Delta-G solvation = 10.338221 kcal Electronic energy + Delta-G solvation = -24735.892095 eV Core-core repulsion = 20975.880331 eV Total energy + Delta-G solvation = -3760.011765 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.42029 -42.29016 -40.10706 -36.92386 -35.81002 -34.57005 -33.83433 -33.54005 -32.71727 -30.51374 -29.09232 -28.21616 -26.53509 -25.26495 -23.45914 -22.76204 -22.61348 -21.41343 -21.03694 -20.44266 -18.85639 -18.39081 -18.21932 -16.97870 -16.83959 -16.74326 -16.68016 -16.28002 -16.03109 -15.52542 -15.21075 -15.06863 -14.53017 -14.25085 -14.07330 -13.80700 -13.69806 -13.68254 -13.58328 -13.53534 -13.29719 -13.08258 -12.97166 -12.89086 -12.68619 -12.30593 -12.29684 -11.87791 -11.74532 -11.70831 -10.82540 -10.77356 -10.75410 -10.25778 -10.05450 -9.41246 -9.31894 -8.37467 -6.53971 0.70098 0.85159 1.34010 1.38961 1.39590 1.48023 1.66551 1.75458 2.15228 2.32469 2.46228 2.57886 2.94605 3.70890 3.75732 3.77901 4.03836 4.13912 4.18426 4.21655 4.24245 4.29980 4.34385 4.54265 4.60313 4.64166 4.69413 4.79312 4.86198 4.92074 4.99771 5.03643 5.07881 5.17991 5.21544 5.24628 5.33737 5.48985 5.58294 5.67286 5.70155 5.75097 6.05521 6.27460 6.54739 6.66642 6.86523 7.16950 7.40178 8.70128 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027930 B = 0.001957 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.271592 B =14304.493479 C =14485.686509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.143 3.857 3 C -0.331 4.331 4 C 0.604 3.396 5 O -0.584 6.584 6 N -0.717 5.717 7 C 0.124 3.876 8 C -0.115 4.115 9 C -0.034 4.034 10 C -0.023 4.023 11 C -0.224 4.224 12 C -0.230 4.230 13 C -0.050 4.050 14 O -0.195 6.195 15 C 0.079 3.921 16 N -0.338 5.338 17 N -0.338 5.338 18 C 0.267 3.733 19 C -0.556 4.556 20 H 0.052 0.948 21 C 0.023 3.977 22 N -0.916 5.916 23 Si 0.972 3.028 24 H -0.273 1.273 25 H -0.273 1.273 26 H -0.267 1.267 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.102 0.898 30 H 0.412 0.588 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.111 0.889 36 H 0.089 0.911 37 H 0.158 0.842 38 H 0.163 0.837 39 H 0.231 0.769 40 H 0.227 0.773 41 H 0.031 0.969 42 H 0.051 0.949 43 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.511 27.447 1.507 28.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.008 3.992 3 C -0.347 4.347 4 C 0.393 3.607 5 O -0.466 6.466 6 N -0.369 5.369 7 C 0.001 3.999 8 C -0.152 4.152 9 C -0.072 4.072 10 C -0.073 4.073 11 C -0.243 4.243 12 C -0.249 4.249 13 C -0.117 4.117 14 O -0.092 6.092 15 C -0.107 4.107 16 N -0.157 5.157 17 N -0.115 5.115 18 C 0.148 3.852 19 C -0.594 4.594 20 H 0.070 0.930 21 C -0.178 4.178 22 N -0.554 5.554 23 Si 0.795 3.205 24 H -0.198 1.198 25 H -0.198 1.198 26 H -0.191 1.191 27 H 0.101 0.899 28 H 0.089 0.911 29 H 0.120 0.880 30 H 0.248 0.752 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.129 0.871 36 H 0.108 0.892 37 H 0.176 0.824 38 H 0.180 0.820 39 H 0.247 0.753 40 H 0.243 0.757 41 H 0.049 0.951 42 H 0.068 0.932 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.220 26.148 1.867 27.191 hybrid contribution 0.112 -0.087 -0.888 0.900 sum 7.332 26.061 0.979 27.091 Atomic orbital electron populations 1.20544 0.85918 1.04003 1.03896 1.21988 0.95949 0.86793 0.94511 1.19989 0.93261 0.93175 1.28249 1.17111 0.85108 0.83861 0.74635 1.90679 1.18006 1.84752 1.53174 1.45561 1.09933 1.05607 1.75770 1.21335 0.97155 0.79081 1.02330 1.21673 0.96932 0.92573 1.04062 1.20064 0.91038 0.90442 1.05643 1.22735 0.98731 1.01713 0.84083 1.21934 0.98854 1.03345 1.00201 1.22187 1.02297 1.05016 0.95375 1.24708 0.92039 0.97994 0.96928 1.84021 1.37028 1.52377 1.35780 1.24510 0.97669 0.91577 0.96981 1.77094 0.98332 1.14505 1.25817 1.49096 1.03388 1.07735 1.51318 1.19366 0.95282 0.72402 0.98159 1.21359 1.48006 0.98489 0.91546 0.92993 1.25738 0.93832 0.95942 1.02310 1.69991 1.44764 1.07577 1.33085 0.85400 0.78823 0.77666 0.78596 1.19830 1.19776 1.19132 0.89938 0.91131 0.87965 0.75151 0.91547 0.91810 0.90671 0.89946 0.87086 0.89246 0.82443 0.81965 0.75266 0.75691 0.95080 0.93169 0.91663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.16 9.57 71.24 0.68 -2.48 16 2 C 0.14 5.90 7.01 42.14 0.30 6.20 16 3 C -0.33 -11.69 6.13 -20.15 -0.12 -11.81 16 4 C 0.60 18.77 7.81 86.66 0.68 19.45 16 5 O -0.58 -21.47 14.84 -4.04 -0.06 -21.53 16 6 N -0.72 -15.02 5.55 -466.38 -2.59 -17.61 16 7 C 0.12 2.07 5.67 86.38 0.49 2.56 16 8 C -0.11 -1.30 5.31 30.59 0.16 -1.14 16 9 C -0.03 -0.37 5.75 29.85 0.17 -0.20 16 10 C -0.02 -0.34 6.58 24.83 0.16 -0.18 16 11 C -0.22 -3.26 10.81 22.19 0.24 -3.02 16 12 C -0.23 -3.03 10.91 22.19 0.24 -2.78 16 13 C -0.05 -0.62 12.09 66.97 0.81 0.19 16 14 O -0.20 -3.30 10.65 -2.45 -0.03 -3.32 16 15 C 0.08 2.60 11.50 85.65 0.99 3.58 16 16 N -0.34 -14.49 12.50 -56.28 -0.70 -15.20 16 17 N -0.34 -15.67 3.56 -336.70 -1.20 -16.87 16 18 C 0.27 13.84 5.97 85.63 0.51 14.35 16 19 C -0.56 -30.71 9.39 25.60 0.24 -30.47 16 20 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 21 C 0.02 1.26 5.46 84.65 0.46 1.72 16 22 N -0.92 -51.37 13.29 21.45 0.28 -51.08 16 23 Si 0.97 42.66 29.54 68.60 2.03 44.69 16 24 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 25 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 26 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 27 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 28 H 0.07 2.58 7.05 -2.39 -0.02 2.57 16 29 H 0.10 3.56 6.50 -2.39 -0.02 3.54 16 30 H 0.41 6.34 7.43 -92.71 -0.69 5.66 16 31 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.16 1.81 8.06 -2.91 -0.02 1.78 16 38 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 39 H 0.23 1.06 8.06 -2.91 -0.02 1.04 16 40 H 0.23 4.63 7.50 -2.91 -0.02 4.61 16 41 H 0.03 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.05 2.61 7.02 -2.39 -0.02 2.59 16 43 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -71.36 372.12 4.09 -67.28 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 0.34 Total: 17.69 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: 6.01 Total: -4.05 kcal Atomic # 7 Polarization: -96.55 SS G_CDS: -4.21 Total: -100.75 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.09 Total: -24.85 kcal Atomic # 14 Polarization: 42.66 SS G_CDS: 2.03 Total: 44.69 kcal Total: -71.36 4.09 -67.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893040220.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.617 kcal (2) G-P(sol) polarization free energy of solvation -71.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.279 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds