Wall clock time and date at job start Tue Mar 31 2020 12:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.34302 * 125.79249 * 2 1 4 4 C 1.34309 * 109.47500 * 180.02562 * 3 2 1 5 5 C 1.34508 * 108.42038 * 359.72049 * 4 3 2 6 6 C 1.34519 * 125.78644 * 180.02562 * 2 1 3 7 7 C 1.50694 * 126.57818 * 359.96745 * 6 2 1 8 8 N 1.46506 * 109.47232 * 185.30067 * 7 6 2 9 9 C 1.46501 * 119.99896 * 274.92857 * 8 7 6 10 10 C 1.34776 * 119.99800 * 94.91755 * 8 7 6 11 11 O 1.21599 * 120.00469 * 4.33043 * 10 8 7 12 12 C 1.47429 * 119.99885 * 184.32872 * 10 8 7 13 13 C 1.41291 * 126.41385 * 324.76464 * 12 10 8 14 14 N 1.30449 * 108.02460 * 180.02562 * 13 12 10 15 15 N 1.39932 * 108.89488 * 0.02562 * 14 13 12 16 16 C 1.46504 * 125.75177 * 180.02562 * 15 14 13 17 17 C 1.50696 * 109.47236 * 269.97051 * 16 15 14 18 18 H 1.08006 * 120.00098 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00116 * 179.97438 * 17 16 15 20 20 N 1.31509 * 119.99692 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99922 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47076 * 90.00439 * 21 19 17 23 23 H 1.48503 * 109.47065 * 210.00461 * 21 19 17 24 24 H 1.48499 * 109.47529 * 330.00632 * 21 19 17 25 25 C 1.34255 * 108.49511 * 359.97438 * 15 14 13 26 26 C 1.50700 * 126.29234 * 180.26728 * 25 15 14 27 27 H 1.09000 * 109.47067 * 274.95393 * 1 2 3 28 28 H 1.09006 * 109.46993 * 34.94846 * 1 2 3 29 29 H 1.08999 * 109.47566 * 154.95348 * 1 2 3 30 30 H 1.08005 * 125.78399 * 180.02562 * 4 3 2 31 31 H 1.08004 * 126.58113 * 180.26975 * 5 4 3 32 32 H 1.08994 * 109.47516 * 65.30535 * 7 6 2 33 33 H 1.09003 * 109.47162 * 305.29748 * 7 6 2 34 34 H 1.08996 * 109.46691 * 264.58998 * 9 8 7 35 35 H 1.08996 * 109.47141 * 24.58636 * 9 8 7 36 36 H 1.09006 * 109.47010 * 144.59233 * 9 8 7 37 37 H 1.08003 * 125.99005 * 0.02562 * 13 12 10 38 38 H 1.08997 * 109.47145 * 29.97581 * 16 15 14 39 39 H 1.09000 * 109.46967 * 149.97437 * 16 15 14 40 40 H 0.97006 * 119.99477 * 179.97438 * 20 19 17 41 41 H 1.08996 * 109.47103 * 269.70242 * 26 25 15 42 42 H 1.08996 * 109.47367 * 29.71201 * 26 25 15 43 43 H 1.09005 * 109.46798 * 149.70888 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2924 1.0894 0.0000 4 6 3.5814 0.7120 -0.0006 5 6 3.6308 -0.6321 0.0053 6 6 2.2936 -1.0912 -0.0005 7 6 1.8370 -2.5273 -0.0004 8 7 2.9999 -3.4095 0.1265 9 6 3.7576 -3.7987 -1.0654 10 6 3.3726 -3.8626 1.3399 11 8 2.6990 -3.6042 2.3187 12 6 4.5971 -4.6716 1.4803 13 6 5.0925 -5.6119 0.5494 14 7 6.1931 -6.1178 1.0334 15 7 6.4504 -5.5345 2.2791 16 6 7.5936 -5.8344 3.1449 17 6 7.2351 -6.9624 4.0776 18 1 6.2540 -7.4115 4.0299 19 6 8.1600 -7.4220 4.9911 20 7 9.3548 -6.8755 5.0488 21 14 7.7158 -8.8208 6.1467 22 1 8.0669 -10.1170 5.5128 23 1 8.4693 -8.6711 7.4176 24 1 6.2582 -8.7864 6.4284 25 6 5.4738 -4.6530 2.5465 26 6 5.3590 -3.7961 3.7808 27 1 -0.3633 0.0887 1.0238 28 1 -0.3633 0.8424 -0.5887 29 1 -0.3634 -0.9310 -0.4350 30 1 4.4337 1.3755 -0.0003 31 1 4.5211 -1.2435 0.0105 32 1 1.3174 -2.7435 -0.9338 33 1 1.1614 -2.6938 0.8386 34 1 3.3994 -4.7635 -1.4244 35 1 3.6213 -3.0480 -1.8438 36 1 4.8157 -3.8744 -0.8146 37 1 4.6393 -5.8671 -0.3972 38 1 8.4466 -6.1264 2.5324 39 1 7.8504 -4.9493 3.7270 40 1 10.0053 -7.1986 5.6918 41 1 4.7856 -4.3277 4.5401 42 1 6.3552 -3.5770 4.1650 43 1 4.8531 -2.8637 3.5300 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895854207.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:02 Heat of formation + Delta-G solvation = 53.089035 kcal Electronic energy + Delta-G solvation = -26331.858994 eV Core-core repulsion = 22573.701044 eV Total energy + Delta-G solvation = -3758.157950 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.66421 -40.84329 -38.98538 -35.74523 -33.98845 -33.36561 -32.07896 -31.94967 -31.16488 -28.75746 -27.19166 -26.86827 -26.39046 -25.24795 -23.42169 -21.82237 -21.16965 -20.02601 -19.54263 -18.40788 -17.20182 -16.87458 -16.73032 -16.22716 -15.76644 -15.39444 -15.06493 -14.60507 -14.47313 -14.20478 -13.68497 -13.45405 -13.23009 -13.08296 -13.01237 -12.74092 -12.71845 -12.47917 -12.43892 -12.25749 -12.15956 -12.03920 -11.85425 -11.62648 -11.48278 -11.08747 -10.88538 -10.35426 -10.24371 -9.91403 -9.66118 -9.40262 -8.70343 -8.66262 -8.52781 -8.39871 -7.87304 -6.33020 -4.40548 1.64308 2.26543 2.53477 2.82379 2.92580 3.06673 3.19359 3.25616 3.29749 3.43588 3.74201 4.25432 4.60412 4.78809 4.90242 4.93212 5.02847 5.12346 5.14886 5.22594 5.24524 5.31524 5.44163 5.48476 5.51872 5.66234 5.71426 5.74100 5.79583 5.93179 5.95878 6.06390 6.07347 6.40270 6.43759 6.48372 6.65822 6.81551 6.90668 7.06929 7.17855 7.57342 7.58791 7.78072 7.80442 8.39633 8.56703 8.65592 9.26453 10.75174 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024097 B = 0.002872 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.712654 B = 9745.691301 C = 9891.757330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.017 4.017 3 O -0.178 6.178 4 C -0.050 4.050 5 C -0.189 4.189 6 C -0.188 4.188 7 C 0.188 3.812 8 N -0.615 5.615 9 C 0.079 3.921 10 C 0.606 3.394 11 O -0.546 6.546 12 C -0.328 4.328 13 C 0.053 3.947 14 N -0.296 5.296 15 N -0.313 5.313 16 C 0.252 3.748 17 C -0.539 4.539 18 H 0.065 0.935 19 C 0.067 3.933 20 N -0.890 5.890 21 Si 0.908 3.092 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.271 1.271 25 C 0.157 3.843 26 C -0.086 4.086 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.201 0.799 31 H 0.145 0.855 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.179 0.821 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.269 0.731 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.455 13.346 -12.589 22.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.068 4.068 3 O -0.075 6.075 4 C -0.117 4.117 5 C -0.208 4.208 6 C -0.191 4.191 7 C 0.065 3.935 8 N -0.348 5.348 9 C -0.064 4.064 10 C 0.397 3.603 11 O -0.424 6.424 12 C -0.343 4.343 13 C -0.133 4.133 14 N -0.117 5.117 15 N -0.090 5.090 16 C 0.135 3.865 17 C -0.578 4.578 18 H 0.084 0.916 19 C -0.136 4.136 20 N -0.528 5.528 21 Si 0.734 3.266 22 H -0.202 1.202 23 H -0.208 1.208 24 H -0.195 1.195 25 C 0.020 3.980 26 C -0.144 4.144 27 H 0.099 0.901 28 H 0.093 0.907 29 H 0.105 0.895 30 H 0.217 0.783 31 H 0.163 0.837 32 H 0.100 0.900 33 H 0.114 0.886 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.196 0.804 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.105 0.895 42 H 0.093 0.907 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.609 12.861 -12.087 21.691 hybrid contribution -0.353 -0.439 0.627 0.843 sum -12.962 12.422 -11.460 21.299 Atomic orbital electron populations 1.20283 0.85239 1.03783 1.03546 1.22082 0.93796 0.83756 1.07141 1.83985 1.16868 1.34750 1.71909 1.23930 0.84145 0.96053 1.07554 1.21633 0.97774 0.94404 1.06988 1.20697 0.93482 0.96282 1.08596 1.19606 0.87860 0.83429 1.02596 1.47448 1.30659 1.49319 1.07364 1.21993 0.97525 0.99843 0.87088 1.17422 0.83465 0.77598 0.81810 1.90714 1.54365 1.59591 1.37710 1.19610 1.02803 1.12197 0.99710 1.23935 0.94092 0.95960 0.99292 1.77145 1.18118 1.20645 0.95775 1.49320 1.19814 1.26219 1.13692 1.19831 0.80899 0.98139 0.87655 1.21265 1.00677 1.17856 1.17981 0.91633 1.24919 0.94532 0.97105 0.97093 1.69914 1.04932 1.41629 1.36331 0.86325 0.78822 0.81710 0.79707 1.20245 1.20792 1.19546 1.21345 0.89060 0.92070 0.95516 1.20427 1.03096 0.97937 0.92990 0.90100 0.90723 0.89453 0.78266 0.83710 0.90040 0.88594 0.92656 0.91489 0.90163 0.80442 0.92554 0.92665 0.92134 0.89504 0.90726 0.90397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.26 36.00 0.37 -0.14 16 2 C -0.02 -0.19 7.32 -35.63 -0.26 -0.45 16 3 O -0.18 -2.08 10.65 5.70 0.06 -2.01 16 4 C -0.05 -0.53 12.09 29.41 0.36 -0.17 16 5 C -0.19 -2.28 10.10 -39.70 -0.40 -2.68 16 6 C -0.19 -2.23 6.11 -104.74 -0.64 -2.87 16 7 C 0.19 2.12 5.43 -5.19 -0.03 2.09 16 8 N -0.61 -7.98 2.26 -184.23 -0.42 -8.40 16 9 C 0.08 0.79 8.76 59.85 0.52 1.31 16 10 C 0.61 10.38 7.38 -12.52 -0.09 10.29 16 11 O -0.55 -10.92 15.62 5.28 0.08 -10.84 16 12 C -0.33 -6.06 5.42 -105.07 -0.57 -6.63 16 13 C 0.05 0.94 9.70 -16.98 -0.16 0.77 16 14 N -0.30 -6.37 12.50 30.86 0.39 -5.98 16 15 N -0.31 -7.09 3.56 -57.77 -0.21 -7.29 16 16 C 0.25 6.27 5.97 -5.19 -0.03 6.24 16 17 C -0.54 -14.66 9.39 -34.44 -0.32 -14.98 16 18 H 0.07 1.85 7.81 -52.48 -0.41 1.44 16 19 C 0.07 1.81 5.46 -17.82 -0.10 1.72 16 20 N -0.89 -24.69 13.29 55.43 0.74 -23.95 16 21 Si 0.91 21.00 29.54 -169.99 -5.02 15.98 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 25 C 0.16 3.21 7.00 -81.60 -0.57 2.64 16 26 C -0.09 -1.57 9.51 36.01 0.34 -1.23 16 27 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.09 0.47 7.75 -51.93 -0.40 0.07 16 30 H 0.20 1.42 8.06 -52.48 -0.42 1.00 16 31 H 0.15 1.79 7.84 -52.48 -0.41 1.38 16 32 H 0.08 0.69 8.11 -51.93 -0.42 0.26 16 33 H 0.10 1.20 7.23 -51.93 -0.38 0.82 16 34 H 0.05 0.47 7.28 -51.93 -0.38 0.09 16 35 H 0.07 0.55 8.03 -51.93 -0.42 0.13 16 36 H 0.08 0.90 5.82 -51.93 -0.30 0.59 16 37 H 0.18 2.36 6.12 -52.48 -0.32 2.04 16 38 H 0.06 1.49 8.14 -51.93 -0.42 1.06 16 39 H 0.06 1.36 7.01 -51.93 -0.36 1.00 16 40 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.09 1.61 8.14 -51.93 -0.42 1.18 16 42 H 0.07 1.31 7.04 -51.93 -0.37 0.94 16 43 H 0.08 1.32 7.58 -51.93 -0.39 0.93 16 LS Contribution 365.19 15.07 5.50 5.50 Total: -1.00 -32.86 365.19 -6.27 -39.13 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -5.81 Total: 1.95 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -1.59 Total: -4.08 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: 0.50 Total: -45.63 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.14 Total: -12.86 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.86 -6.27 -39.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895854207.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.221 kcal (2) G-P(sol) polarization free energy of solvation -32.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds