Wall clock time and date at job start Tue Mar 31 2020 12:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.34302 * 125.79249 * 2 1 4 4 C 1.34309 * 109.47500 * 180.02562 * 3 2 1 5 5 C 1.34508 * 108.42038 * 359.72049 * 4 3 2 6 6 C 1.34519 * 125.78644 * 180.02562 * 2 1 3 7 7 C 1.50694 * 126.57818 * 359.96745 * 6 2 1 8 8 N 1.46506 * 109.47232 * 185.30067 * 7 6 2 9 9 C 1.46501 * 119.99896 * 274.92857 * 8 7 6 10 10 C 1.34776 * 119.99800 * 94.91755 * 8 7 6 11 11 O 1.21599 * 120.00469 * 4.33043 * 10 8 7 12 12 C 1.47429 * 119.99885 * 184.32872 * 10 8 7 13 13 C 1.41291 * 126.41385 * 324.76464 * 12 10 8 14 14 N 1.30449 * 108.02460 * 180.02562 * 13 12 10 15 15 N 1.39932 * 108.89488 * 0.02562 * 14 13 12 16 16 C 1.46504 * 125.75177 * 180.02562 * 15 14 13 17 17 C 1.50696 * 109.47236 * 269.97051 * 16 15 14 18 18 H 1.08006 * 120.00098 * 0.02562 * 17 16 15 19 19 C 1.37879 * 120.00116 * 179.97438 * 17 16 15 20 20 N 1.31509 * 119.99692 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99922 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47076 * 90.00439 * 21 19 17 23 23 H 1.48503 * 109.47065 * 210.00461 * 21 19 17 24 24 H 1.48499 * 109.47529 * 330.00632 * 21 19 17 25 25 C 1.34255 * 108.49511 * 359.97438 * 15 14 13 26 26 C 1.50700 * 126.29234 * 180.26728 * 25 15 14 27 27 H 1.09000 * 109.47067 * 274.95393 * 1 2 3 28 28 H 1.09006 * 109.46993 * 34.94846 * 1 2 3 29 29 H 1.08999 * 109.47566 * 154.95348 * 1 2 3 30 30 H 1.08005 * 125.78399 * 180.02562 * 4 3 2 31 31 H 1.08004 * 126.58113 * 180.26975 * 5 4 3 32 32 H 1.08994 * 109.47516 * 65.30535 * 7 6 2 33 33 H 1.09003 * 109.47162 * 305.29748 * 7 6 2 34 34 H 1.08996 * 109.46691 * 264.58998 * 9 8 7 35 35 H 1.08996 * 109.47141 * 24.58636 * 9 8 7 36 36 H 1.09006 * 109.47010 * 144.59233 * 9 8 7 37 37 H 1.08003 * 125.99005 * 0.02562 * 13 12 10 38 38 H 1.08997 * 109.47145 * 29.97581 * 16 15 14 39 39 H 1.09000 * 109.46967 * 149.97437 * 16 15 14 40 40 H 0.97006 * 119.99477 * 179.97438 * 20 19 17 41 41 H 1.08996 * 109.47103 * 269.70242 * 26 25 15 42 42 H 1.08996 * 109.47367 * 29.71201 * 26 25 15 43 43 H 1.09005 * 109.46798 * 149.70888 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2924 1.0894 0.0000 4 6 3.5814 0.7120 -0.0006 5 6 3.6308 -0.6321 0.0053 6 6 2.2936 -1.0912 -0.0005 7 6 1.8370 -2.5273 -0.0004 8 7 2.9999 -3.4095 0.1265 9 6 3.7576 -3.7987 -1.0654 10 6 3.3726 -3.8626 1.3399 11 8 2.6990 -3.6042 2.3187 12 6 4.5971 -4.6716 1.4803 13 6 5.0925 -5.6119 0.5494 14 7 6.1931 -6.1178 1.0334 15 7 6.4504 -5.5345 2.2791 16 6 7.5936 -5.8344 3.1449 17 6 7.2351 -6.9624 4.0776 18 1 6.2540 -7.4115 4.0299 19 6 8.1600 -7.4220 4.9911 20 7 9.3548 -6.8755 5.0488 21 14 7.7158 -8.8208 6.1467 22 1 8.0669 -10.1170 5.5128 23 1 8.4693 -8.6711 7.4176 24 1 6.2582 -8.7864 6.4284 25 6 5.4738 -4.6530 2.5465 26 6 5.3590 -3.7961 3.7808 27 1 -0.3633 0.0887 1.0238 28 1 -0.3633 0.8424 -0.5887 29 1 -0.3634 -0.9310 -0.4350 30 1 4.4337 1.3755 -0.0003 31 1 4.5211 -1.2435 0.0105 32 1 1.3174 -2.7435 -0.9338 33 1 1.1614 -2.6938 0.8386 34 1 3.3994 -4.7635 -1.4244 35 1 3.6213 -3.0480 -1.8438 36 1 4.8157 -3.8744 -0.8146 37 1 4.6393 -5.8671 -0.3972 38 1 8.4466 -6.1264 2.5324 39 1 7.8504 -4.9493 3.7270 40 1 10.0053 -7.1986 5.6918 41 1 4.7856 -4.3277 4.5401 42 1 6.3552 -3.5770 4.1650 43 1 4.8531 -2.8637 3.5300 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895854207.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:10:02 Heat of formation + Delta-G solvation = 33.498680 kcal Electronic energy + Delta-G solvation = -26332.708496 eV Core-core repulsion = 22573.701044 eV Total energy + Delta-G solvation = -3759.007452 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.49614 -42.36680 -40.27487 -36.89316 -35.83005 -34.44198 -33.73394 -32.75978 -32.68733 -29.93683 -28.69305 -28.29039 -27.33888 -26.29192 -25.27732 -23.02601 -22.28723 -21.24979 -20.64090 -19.79698 -18.86075 -18.20266 -18.00253 -17.15678 -16.94049 -16.85764 -16.35299 -16.34178 -15.75410 -15.28428 -15.06609 -14.70574 -14.38699 -14.19790 -13.90558 -13.86410 -13.78659 -13.67711 -13.62433 -13.55491 -13.39701 -13.24458 -13.15591 -12.96474 -12.79133 -12.69948 -12.55353 -12.31432 -11.85112 -11.79922 -10.81951 -10.76999 -10.53715 -10.25291 -9.72978 -9.40867 -9.19295 -8.38885 -6.55030 0.73192 0.83781 1.34387 1.36337 1.38750 1.48174 1.65652 1.67717 2.04810 2.19895 2.31871 2.40213 2.93235 3.69529 3.72002 3.90768 3.95057 4.05033 4.14845 4.16370 4.37684 4.41780 4.48262 4.53678 4.58581 4.62779 4.75481 4.77025 4.78620 4.89738 4.93473 4.94809 4.97337 5.00602 5.05168 5.14461 5.35642 5.48348 5.58749 5.64511 5.73151 5.74512 6.04754 6.24273 6.42032 6.54147 6.84007 7.16086 7.28033 8.68883 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024097 B = 0.002872 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.712654 B = 9745.691301 C = 9891.757330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.021 4.021 3 O -0.189 6.189 4 C -0.048 4.048 5 C -0.213 4.213 6 C -0.208 4.208 7 C 0.189 3.811 8 N -0.602 5.602 9 C 0.072 3.928 10 C 0.605 3.395 11 O -0.582 6.582 12 C -0.325 4.325 13 C 0.077 3.923 14 N -0.335 5.335 15 N -0.337 5.337 16 C 0.269 3.731 17 C -0.557 4.557 18 H 0.049 0.951 19 C 0.025 3.975 20 N -0.916 5.916 21 Si 0.970 3.030 22 H -0.272 1.272 23 H -0.270 1.270 24 H -0.271 1.271 25 C 0.137 3.863 26 C -0.079 4.079 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.105 0.895 30 H 0.229 0.771 31 H 0.136 0.864 32 H 0.118 0.882 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.090 0.910 36 H 0.068 0.932 37 H 0.224 0.776 38 H 0.033 0.967 39 H 0.051 0.949 40 H 0.275 0.725 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.215 13.606 -13.932 24.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.071 4.071 3 O -0.086 6.086 4 C -0.115 4.115 5 C -0.233 4.233 6 C -0.210 4.210 7 C 0.066 3.934 8 N -0.334 5.334 9 C -0.070 4.070 10 C 0.395 3.605 11 O -0.462 6.462 12 C -0.340 4.340 13 C -0.109 4.109 14 N -0.155 5.155 15 N -0.114 5.114 16 C 0.150 3.850 17 C -0.595 4.595 18 H 0.068 0.932 19 C -0.176 4.176 20 N -0.554 5.554 21 Si 0.794 3.206 22 H -0.197 1.197 23 H -0.195 1.195 24 H -0.196 1.196 25 C 0.002 3.998 26 C -0.137 4.137 27 H 0.102 0.898 28 H 0.107 0.893 29 H 0.124 0.876 30 H 0.245 0.755 31 H 0.154 0.846 32 H 0.135 0.865 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.109 0.891 36 H 0.086 0.914 37 H 0.240 0.760 38 H 0.051 0.949 39 H 0.068 0.932 40 H 0.084 0.916 41 H 0.099 0.901 42 H 0.093 0.907 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.378 13.144 -13.480 23.689 hybrid contribution 0.128 -0.422 0.916 1.017 sum -14.249 12.722 -12.564 22.864 Atomic orbital electron populations 1.20466 0.82780 1.05446 1.04224 1.22718 0.95256 0.83218 1.05909 1.84005 1.17333 1.35308 1.71953 1.24473 0.84597 0.96189 1.06209 1.21718 0.97795 0.95193 1.08578 1.20815 0.93621 0.96786 1.09791 1.19778 0.86918 0.82846 1.03814 1.47445 1.30881 1.48245 1.06788 1.22216 0.96499 1.01971 0.86308 1.17264 0.82787 0.77623 0.82782 1.90697 1.55293 1.60988 1.39253 1.19884 1.02820 1.12188 0.99101 1.24617 0.92364 0.93921 1.00026 1.77098 1.20281 1.22244 0.95834 1.49053 1.20168 1.27830 1.14370 1.19347 0.81236 0.97222 0.87199 1.21402 1.00176 1.18831 1.19071 0.93239 1.25703 0.94340 0.99265 0.98335 1.69988 1.05670 1.42730 1.36999 0.85372 0.78479 0.78718 0.78066 1.19725 1.19480 1.19608 1.21810 0.89149 0.92054 0.96783 1.20396 1.03107 0.97994 0.92253 0.89774 0.89261 0.87641 0.75510 0.84571 0.86462 0.89943 0.90158 0.89126 0.91380 0.76032 0.94929 0.93169 0.91626 0.90109 0.90673 0.89311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.85 10.26 71.23 0.73 -0.12 16 2 C -0.02 -0.41 7.32 24.83 0.18 -0.23 16 3 O -0.19 -4.11 10.65 -2.53 -0.03 -4.14 16 4 C -0.05 -0.96 12.09 66.97 0.81 -0.15 16 5 C -0.21 -4.94 10.10 22.19 0.22 -4.72 16 6 C -0.21 -4.57 6.11 -19.94 -0.12 -4.70 16 7 C 0.19 3.82 5.43 85.63 0.47 4.29 16 8 N -0.60 -14.36 2.26 -855.05 -1.94 -16.30 16 9 C 0.07 1.22 8.76 127.77 1.12 2.33 16 10 C 0.61 20.15 7.38 86.66 0.64 20.79 16 11 O -0.58 -23.14 15.62 -4.03 -0.06 -23.21 16 12 C -0.32 -11.84 5.42 -20.15 -0.11 -11.94 16 13 C 0.08 2.59 9.70 85.65 0.83 3.43 16 14 N -0.33 -14.44 12.50 -56.27 -0.70 -15.14 16 15 N -0.34 -15.66 3.56 -336.70 -1.20 -16.86 16 16 C 0.27 13.94 5.97 85.63 0.51 14.45 16 17 C -0.56 -31.09 9.39 25.60 0.24 -30.85 16 18 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 19 C 0.03 1.36 5.46 84.66 0.46 1.83 16 20 N -0.92 -51.42 13.29 21.45 0.28 -51.14 16 21 Si 0.97 43.17 29.54 68.60 2.03 45.20 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 23 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 24 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 25 C 0.14 5.72 7.00 42.14 0.29 6.02 16 26 C -0.08 -2.97 9.51 71.24 0.68 -2.30 16 27 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 29 H 0.11 0.82 7.75 -2.39 -0.02 0.81 16 30 H 0.23 2.85 8.06 -2.91 -0.02 2.82 16 31 H 0.14 3.31 7.84 -2.91 -0.02 3.29 16 32 H 0.12 1.52 8.11 -2.39 -0.02 1.50 16 33 H 0.08 1.93 7.23 -2.39 -0.02 1.91 16 34 H 0.08 1.01 7.28 -2.39 -0.02 0.99 16 35 H 0.09 1.16 8.03 -2.39 -0.02 1.14 16 36 H 0.07 1.36 5.82 -2.38 -0.01 1.34 16 37 H 0.22 5.16 6.12 -2.91 -0.02 5.15 16 38 H 0.03 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.05 2.60 7.01 -2.39 -0.02 2.58 16 40 H 0.27 14.38 8.31 -92.70 -0.77 13.61 16 41 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 42 H 0.07 2.74 7.04 -2.39 -0.02 2.73 16 43 H 0.09 3.07 7.58 -2.38 -0.02 3.05 16 Total: -1.00 -72.65 365.19 6.37 -66.28 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 1.03 Total: 17.18 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: 6.96 Total: -1.87 kcal Atomic # 7 Polarization: -95.89 SS G_CDS: -3.55 Total: -99.44 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.09 Total: -27.35 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -72.65 6.37 -66.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895854207.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.777 kcal (2) G-P(sol) polarization free energy of solvation -72.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds