Wall clock time and date at job start Tue Mar 31 2020 11:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35515 * 119.44010 * 2 1 4 4 C 1.39809 * 120.09124 * 179.71973 * 3 2 1 5 5 C 1.38714 * 119.02127 * 0.28154 * 4 3 2 6 6 C 1.48070 * 120.54081 * 179.97438 * 5 4 3 7 7 N 1.30930 * 126.43402 * 180.02562 * 6 5 4 8 8 O 1.21293 * 110.06093 * 179.97438 * 7 6 5 9 9 C 1.33671 * 110.06060 * 0.02562 * 8 7 6 10 10 C 1.50702 * 126.41687 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.47414 * 269.97923 * 10 9 8 12 12 C 1.53002 * 109.47345 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47345 * 180.02562 * 12 11 10 14 14 C 1.50702 * 109.47414 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99392 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99855 * 179.97438 * 14 13 12 17 17 N 1.31507 * 120.00343 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99471 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46789 * 60.00366 * 18 16 14 20 20 H 1.48503 * 109.46952 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47218 * 300.00452 * 18 16 14 22 22 N 1.30946 * 107.16832 * 359.72530 * 9 8 7 23 23 C 1.41628 * 118.91935 * 359.97438 * 5 4 3 24 24 O 1.21964 * 120.07104 * 180.02562 * 23 5 4 25 25 N 1.34650 * 119.85208 * 0.02562 * 23 5 4 26 26 C 1.46493 * 119.50606 * 179.97438 * 25 23 5 27 27 H 1.09000 * 109.47042 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46779 * 119.99858 * 1 2 3 29 29 H 1.09005 * 109.47163 * 239.99954 * 1 2 3 30 30 H 1.08002 * 119.95645 * 0.02562 * 3 2 1 31 31 H 1.08004 * 120.48998 * 180.25547 * 4 3 2 32 32 H 1.09005 * 109.47110 * 29.98068 * 10 9 8 33 33 H 1.08993 * 109.47083 * 149.97408 * 10 9 8 34 34 H 1.08997 * 109.46906 * 299.99541 * 11 10 9 35 35 H 1.09001 * 109.47265 * 59.99963 * 11 10 9 36 36 H 1.09002 * 109.46621 * 300.00103 * 12 11 10 37 37 H 1.09001 * 109.46999 * 59.99764 * 12 11 10 38 38 H 1.09000 * 109.46661 * 299.99959 * 13 12 11 39 39 H 1.08996 * 109.47174 * 59.99193 * 13 12 11 40 40 H 0.97004 * 119.99834 * 179.97438 * 17 16 14 41 41 H 1.09004 * 109.46991 * 0.02562 * 26 25 23 42 42 H 1.09004 * 109.47190 * 119.99707 * 26 25 23 43 43 H 1.08996 * 109.47611 * 240.00585 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1731 1.1802 0.0000 4 6 3.5710 1.1961 0.0059 5 6 4.2577 -0.0092 0.0058 6 6 5.7383 -0.0316 0.0114 7 7 6.4998 -1.0967 0.0114 8 8 7.6686 -0.7724 0.0162 9 6 7.7747 0.5601 0.0204 10 6 9.0547 1.3556 0.0276 11 6 9.4822 1.6211 1.4724 12 6 10.7813 2.4293 1.4796 13 6 11.2091 2.6943 2.9245 14 6 12.4890 3.4898 2.9316 15 1 12.9509 3.7779 1.9988 16 6 13.0697 3.8506 4.1289 17 7 12.5071 3.5002 5.2647 18 14 14.6567 4.8361 4.1376 19 1 14.4403 6.1289 3.4397 20 1 15.0719 5.0934 5.5400 21 1 15.7196 4.0689 3.4400 22 7 6.5583 1.0448 0.0118 23 6 3.5197 -1.2179 0.0002 24 8 4.1021 -2.2896 0.0004 25 7 2.1737 -1.1814 -0.0054 26 6 1.4179 -2.4362 -0.0117 27 1 -0.3633 1.0277 0.0005 28 1 -0.3633 -0.5138 -0.8900 29 1 -0.3634 -0.5139 0.8900 30 1 1.6232 2.1097 0.0004 31 1 4.1084 2.1329 0.0101 32 1 9.8351 0.7928 -0.4846 33 1 8.8955 2.3044 -0.4845 34 1 8.7018 2.1840 1.9845 35 1 9.6413 0.6721 1.9845 36 1 11.5618 1.8668 0.9673 37 1 10.6217 3.3783 0.9677 38 1 10.4286 3.2565 3.4371 39 1 11.3687 1.7452 3.4360 40 1 12.9159 3.7538 6.1070 41 1 2.1108 -3.2777 -0.0104 42 1 0.7865 -2.4846 0.8756 43 1 0.7941 -2.4803 -0.9044 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000896228914.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:50 Heat of formation + Delta-G solvation = 45.887785 kcal Electronic energy + Delta-G solvation = -24955.030436 eV Core-core repulsion = 21196.560216 eV Total energy + Delta-G solvation = -3758.470220 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.31778 -41.78757 -37.62406 -36.34794 -35.82413 -34.51643 -33.20820 -32.25118 -31.72427 -29.33455 -28.30939 -27.99212 -25.70824 -24.26614 -23.49282 -22.61801 -22.28226 -21.16616 -20.12195 -18.08490 -17.85276 -17.61872 -16.81786 -16.65663 -16.26197 -16.17249 -15.13948 -15.03475 -14.64277 -14.42590 -14.16063 -14.06296 -13.54242 -13.53539 -13.25204 -12.93673 -12.80372 -12.59013 -12.31648 -12.13480 -12.01982 -11.96704 -11.70190 -11.64716 -11.00832 -10.93524 -10.63974 -10.58879 -10.54335 -10.42696 -10.25296 -9.75112 -9.66085 -9.26438 -9.01883 -8.31194 -8.12474 -5.96200 -3.98716 0.08170 1.41618 1.48681 2.06750 2.35394 3.02180 3.35952 3.38411 3.40324 3.42644 3.56507 3.77276 4.01123 4.27841 4.32674 4.48929 4.57522 4.68049 4.81975 4.86564 4.90759 5.06280 5.08927 5.19176 5.26496 5.31172 5.33520 5.39490 5.58036 5.66686 5.81708 5.91953 6.00342 6.06274 6.14311 6.18105 6.41712 6.59017 6.73867 6.88879 7.15069 7.66182 7.71548 7.86145 8.04119 8.35655 8.45996 9.08564 9.65163 11.15082 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027064 B = 0.001972 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.339891 B =14192.162415 C =14603.498686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.178 3.822 3 C -0.236 4.236 4 C 0.040 3.960 5 C -0.158 4.158 6 C 0.220 3.780 7 N -0.353 5.353 8 O 0.078 5.922 9 C 0.194 3.806 10 C -0.029 4.029 11 C -0.116 4.116 12 C -0.108 4.108 13 C 0.020 3.980 14 C -0.521 4.521 15 H 0.055 0.945 16 C 0.055 3.945 17 N -0.896 5.896 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.277 1.277 22 N -0.483 5.483 23 C 0.526 3.474 24 O -0.520 6.520 25 N -0.495 5.495 26 C 0.051 3.949 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.154 0.846 31 H 0.150 0.850 32 H 0.101 0.899 33 H 0.108 0.892 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.016 0.984 39 H 0.016 0.984 40 H 0.261 0.739 41 H 0.105 0.895 42 H 0.081 0.919 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.601 -6.966 -13.624 32.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.067 3.933 3 C -0.259 4.259 4 C 0.015 3.985 5 C -0.164 4.164 6 C -0.049 4.049 7 N -0.059 5.059 8 O 0.017 5.983 9 C -0.026 4.026 10 C -0.068 4.068 11 C -0.154 4.154 12 C -0.146 4.146 13 C -0.017 4.017 14 C -0.559 4.559 15 H 0.073 0.927 16 C -0.146 4.146 17 N -0.535 5.535 18 Si 0.720 3.280 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.203 1.203 22 N -0.217 5.217 23 C 0.326 3.674 24 O -0.398 6.398 25 N -0.206 5.206 26 C -0.090 4.090 27 H 0.113 0.887 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.172 0.828 31 H 0.168 0.832 32 H 0.119 0.881 33 H 0.126 0.874 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.123 0.877 42 H 0.100 0.900 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -28.813 -8.261 -13.448 32.853 hybrid contribution 0.953 0.678 0.195 1.186 sum -27.860 -7.583 -13.253 31.770 Atomic orbital electron populations 1.21144 0.87797 1.05544 1.03889 1.20739 0.95307 0.85400 0.91880 1.20468 0.93804 0.97089 1.14536 1.21885 0.93704 0.98048 0.84846 1.18059 0.87318 0.93292 1.17694 1.23038 0.95190 0.84114 1.02580 1.75243 0.88702 1.22123 1.19791 1.85345 1.22358 1.25223 1.65384 1.29020 0.97191 0.82012 0.94390 1.20512 0.86690 0.98010 1.01623 1.21735 0.99951 1.01699 0.92058 1.21631 0.93492 0.97935 1.01534 1.19100 0.96053 0.96847 0.89745 1.21229 1.08266 1.34209 0.92210 0.92678 1.25037 0.97549 0.96242 0.95737 1.69957 1.39750 1.46544 0.97265 0.86661 0.83850 0.80604 0.76885 1.20259 1.21356 1.20253 1.71940 0.99452 1.28601 1.21717 1.16709 0.80591 0.90467 0.79674 1.91013 1.66992 1.30723 1.51109 1.45289 1.07938 1.07513 1.59860 1.22221 0.97485 0.86101 1.03168 0.88699 0.89560 0.89507 0.82828 0.83204 0.88086 0.87368 0.91516 0.91639 0.92911 0.92938 0.96588 0.96559 0.92980 0.87652 0.90036 0.90063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.20 8.96 36.00 0.32 0.13 16 2 C 0.18 1.06 6.65 -81.88 -0.54 0.52 16 3 C -0.24 -1.53 9.59 -39.97 -0.38 -1.92 16 4 C 0.04 0.40 9.81 -38.82 -0.38 0.02 16 5 C -0.16 -2.21 5.92 -104.40 -0.62 -2.83 16 6 C 0.22 3.72 7.78 -156.05 -1.21 2.50 16 7 N -0.35 -6.52 10.90 30.99 0.34 -6.18 16 8 O 0.08 1.31 11.29 18.03 0.20 1.52 16 9 C 0.19 2.96 7.75 -12.98 -0.10 2.86 16 10 C -0.03 -0.38 5.84 -27.88 -0.16 -0.54 16 11 C -0.12 -1.88 5.20 -26.73 -0.14 -2.02 16 12 C -0.11 -2.10 5.15 -26.73 -0.14 -2.24 16 13 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 14 C -0.52 -14.72 9.11 -34.44 -0.31 -15.04 16 15 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.90 -27.20 13.29 55.43 0.74 -26.47 16 18 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 N -0.48 -7.75 11.30 -9.86 -0.11 -7.86 16 23 C 0.53 7.30 7.43 -15.02 -0.11 7.19 16 24 O -0.52 -9.12 14.89 4.95 0.07 -9.04 16 25 N -0.49 -4.39 2.98 -122.20 -0.36 -4.75 16 26 C 0.05 0.29 9.56 59.84 0.57 0.86 16 27 H 0.09 0.01 7.80 -51.93 -0.41 -0.40 16 28 H 0.09 0.05 7.80 -51.93 -0.40 -0.36 16 29 H 0.09 0.06 7.80 -51.93 -0.41 -0.34 16 30 H 0.15 0.50 7.87 -52.49 -0.41 0.09 16 31 H 0.15 1.38 7.92 -52.48 -0.42 0.97 16 32 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.10 0.82 6.85 -51.93 -0.36 0.47 16 42 H 0.08 0.26 7.78 -51.93 -0.40 -0.15 16 43 H 0.08 0.24 7.79 -51.93 -0.40 -0.16 16 LS Contribution 367.49 15.07 5.54 5.54 Total: -1.00 -37.59 367.49 -8.19 -45.77 By element: Atomic # 1 Polarization: -0.44 SS G_CDS: -6.13 Total: -6.57 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -3.45 Total: -8.66 kcal Atomic # 7 Polarization: -45.86 SS G_CDS: 0.60 Total: -45.26 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: 0.28 Total: -7.53 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -37.59 -8.19 -45.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896228914.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.660 kcal (2) G-P(sol) polarization free energy of solvation -37.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds