Wall clock time and date at job start Tue Mar 31 2020 11:42:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35515 * 119.44010 * 2 1 4 4 C 1.39809 * 120.09124 * 179.71973 * 3 2 1 5 5 C 1.38714 * 119.02127 * 0.28154 * 4 3 2 6 6 C 1.48070 * 120.54081 * 179.97438 * 5 4 3 7 7 N 1.30930 * 126.43402 * 180.02562 * 6 5 4 8 8 O 1.21293 * 110.06093 * 179.97438 * 7 6 5 9 9 C 1.33671 * 110.06060 * 0.02562 * 8 7 6 10 10 C 1.50702 * 126.41687 * 179.97438 * 9 8 7 11 11 C 1.52997 * 109.47414 * 269.97923 * 10 9 8 12 12 C 1.53002 * 109.47345 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47345 * 180.02562 * 12 11 10 14 14 C 1.50702 * 109.47414 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99392 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99855 * 179.97438 * 14 13 12 17 17 N 1.31507 * 120.00343 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99471 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46789 * 60.00366 * 18 16 14 20 20 H 1.48503 * 109.46952 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.47218 * 300.00452 * 18 16 14 22 22 N 1.30946 * 107.16832 * 359.72530 * 9 8 7 23 23 C 1.41628 * 118.91935 * 359.97438 * 5 4 3 24 24 O 1.21964 * 120.07104 * 180.02562 * 23 5 4 25 25 N 1.34650 * 119.85208 * 0.02562 * 23 5 4 26 26 C 1.46493 * 119.50606 * 179.97438 * 25 23 5 27 27 H 1.09000 * 109.47042 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46779 * 119.99858 * 1 2 3 29 29 H 1.09005 * 109.47163 * 239.99954 * 1 2 3 30 30 H 1.08002 * 119.95645 * 0.02562 * 3 2 1 31 31 H 1.08004 * 120.48998 * 180.25547 * 4 3 2 32 32 H 1.09005 * 109.47110 * 29.98068 * 10 9 8 33 33 H 1.08993 * 109.47083 * 149.97408 * 10 9 8 34 34 H 1.08997 * 109.46906 * 299.99541 * 11 10 9 35 35 H 1.09001 * 109.47265 * 59.99963 * 11 10 9 36 36 H 1.09002 * 109.46621 * 300.00103 * 12 11 10 37 37 H 1.09001 * 109.46999 * 59.99764 * 12 11 10 38 38 H 1.09000 * 109.46661 * 299.99959 * 13 12 11 39 39 H 1.08996 * 109.47174 * 59.99193 * 13 12 11 40 40 H 0.97004 * 119.99834 * 179.97438 * 17 16 14 41 41 H 1.09004 * 109.46991 * 0.02562 * 26 25 23 42 42 H 1.09004 * 109.47190 * 119.99707 * 26 25 23 43 43 H 1.08996 * 109.47611 * 240.00585 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1731 1.1802 0.0000 4 6 3.5710 1.1961 0.0059 5 6 4.2577 -0.0092 0.0058 6 6 5.7383 -0.0316 0.0114 7 7 6.4998 -1.0967 0.0114 8 8 7.6686 -0.7724 0.0162 9 6 7.7747 0.5601 0.0204 10 6 9.0547 1.3556 0.0276 11 6 9.4822 1.6211 1.4724 12 6 10.7813 2.4293 1.4796 13 6 11.2091 2.6943 2.9245 14 6 12.4890 3.4898 2.9316 15 1 12.9509 3.7779 1.9988 16 6 13.0697 3.8506 4.1289 17 7 12.5071 3.5002 5.2647 18 14 14.6567 4.8361 4.1376 19 1 14.4403 6.1289 3.4397 20 1 15.0719 5.0934 5.5400 21 1 15.7196 4.0689 3.4400 22 7 6.5583 1.0448 0.0118 23 6 3.5197 -1.2179 0.0002 24 8 4.1021 -2.2896 0.0004 25 7 2.1737 -1.1814 -0.0054 26 6 1.4179 -2.4362 -0.0117 27 1 -0.3633 1.0277 0.0005 28 1 -0.3633 -0.5138 -0.8900 29 1 -0.3634 -0.5139 0.8900 30 1 1.6232 2.1097 0.0004 31 1 4.1084 2.1329 0.0101 32 1 9.8351 0.7928 -0.4846 33 1 8.8955 2.3044 -0.4845 34 1 8.7018 2.1840 1.9845 35 1 9.6413 0.6721 1.9845 36 1 11.5618 1.8668 0.9673 37 1 10.6217 3.3783 0.9677 38 1 10.4286 3.2565 3.4371 39 1 11.3687 1.7452 3.4360 40 1 12.9159 3.7538 6.1070 41 1 2.1108 -3.2777 -0.0104 42 1 0.7865 -2.4846 0.8756 43 1 0.7941 -2.4803 -0.9044 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000896228914.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:50 Heat of formation + Delta-G solvation = 20.099524 kcal Electronic energy + Delta-G solvation = -24956.148699 eV Core-core repulsion = 21196.560216 eV Total energy + Delta-G solvation = -3759.588483 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -46.53676 -42.54256 -38.48241 -37.51592 -37.10320 -35.62655 -34.88454 -33.46436 -32.66593 -30.93563 -28.90141 -28.65383 -27.45466 -25.27145 -24.70494 -23.85829 -23.12521 -22.31986 -21.78017 -19.13119 -18.98294 -18.45970 -18.33953 -17.77691 -17.33456 -17.06568 -16.53807 -16.36155 -16.01186 -15.52164 -15.07320 -14.75853 -14.62117 -14.26930 -13.83687 -13.82437 -13.80542 -13.69662 -13.59999 -13.36290 -13.19444 -13.16299 -12.78093 -12.66609 -12.44140 -12.33472 -12.27294 -12.16119 -12.07304 -11.61481 -11.34999 -11.26696 -11.21324 -11.04116 -10.64749 -10.51242 -8.94248 -8.16324 -6.27433 -0.68087 0.24579 0.72460 1.26014 1.38952 1.42620 1.46080 1.53702 1.88565 2.44098 2.52427 2.56762 2.98078 3.16896 3.43795 3.50865 3.84131 3.90864 4.05177 4.09302 4.13219 4.29700 4.31346 4.40090 4.62633 4.63952 4.68015 4.71059 4.73238 4.77856 4.80040 4.88466 4.91052 5.00701 5.15152 5.18525 5.22481 5.32934 5.34757 5.50522 5.59114 5.82104 5.87300 5.91710 6.28771 6.79384 6.91119 7.18161 7.41931 8.95469 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.027064 B = 0.001972 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.339891 B =14192.162415 C =14603.498686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.201 3.799 3 C -0.242 4.242 4 C 0.064 3.936 5 C -0.227 4.227 6 C 0.221 3.779 7 N -0.396 5.396 8 O 0.065 5.935 9 C 0.194 3.806 10 C -0.017 4.017 11 C -0.106 4.106 12 C -0.094 4.094 13 C 0.018 3.982 14 C -0.540 4.540 15 H 0.066 0.934 16 C -0.007 4.007 17 N -0.937 5.937 18 Si 0.966 3.034 19 H -0.265 1.265 20 H -0.287 1.287 21 H -0.266 1.266 22 N -0.492 5.492 23 C 0.513 3.487 24 O -0.579 6.579 25 N -0.491 5.491 26 C 0.044 3.956 27 H 0.120 0.880 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.197 0.803 31 H 0.154 0.846 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.065 0.935 38 H -0.012 1.012 39 H -0.013 1.013 40 H 0.262 0.738 41 H 0.074 0.926 42 H 0.113 0.887 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.141 -5.085 -15.156 35.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.089 3.911 3 C -0.264 4.264 4 C 0.040 3.960 5 C -0.234 4.234 6 C -0.048 4.048 7 N -0.106 5.106 8 O 0.008 5.992 9 C -0.026 4.026 10 C -0.056 4.056 11 C -0.145 4.145 12 C -0.132 4.132 13 C -0.019 4.019 14 C -0.578 4.578 15 H 0.085 0.915 16 C -0.204 4.204 17 N -0.578 5.578 18 Si 0.791 3.209 19 H -0.189 1.189 20 H -0.212 1.212 21 H -0.191 1.191 22 N -0.226 5.226 23 C 0.315 3.685 24 O -0.463 6.463 25 N -0.200 5.200 26 C -0.096 4.096 27 H 0.139 0.861 28 H 0.125 0.875 29 H 0.123 0.877 30 H 0.214 0.786 31 H 0.172 0.828 32 H 0.146 0.854 33 H 0.148 0.852 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.006 0.994 39 H 0.006 0.994 40 H 0.071 0.929 41 H 0.093 0.907 42 H 0.131 0.869 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -31.370 -6.364 -15.001 35.350 hybrid contribution 1.444 0.150 0.700 1.612 sum -29.926 -6.214 -14.301 33.745 Atomic orbital electron populations 1.21415 0.83444 1.07912 1.05504 1.21700 0.97775 0.84033 0.87612 1.20999 0.92210 0.99194 1.13961 1.22160 0.95460 0.96688 0.81735 1.18221 0.86291 0.95002 1.23859 1.23670 0.96732 0.83682 1.00757 1.75227 0.89313 1.23408 1.22640 1.85294 1.22099 1.25842 1.65979 1.29450 0.97767 0.81821 0.93543 1.20518 0.86384 0.99202 0.99454 1.21513 0.98155 1.00450 0.94342 1.21415 0.95140 0.99338 0.97293 1.19060 0.94825 0.94661 0.93360 1.21740 1.09113 1.34197 0.92773 0.91532 1.26051 1.01498 0.97485 0.95344 1.70112 1.41678 1.48010 0.97991 0.85480 0.79155 0.79262 0.77022 1.18929 1.21236 1.19075 1.71933 0.99712 1.28566 1.22434 1.16845 0.82245 0.89725 0.79675 1.90959 1.68568 1.32312 1.54444 1.45443 1.06774 1.09819 1.57925 1.22526 0.96952 0.83747 1.06345 0.86149 0.87521 0.87732 0.78569 0.82816 0.85379 0.85170 0.92736 0.92663 0.91545 0.91592 0.99397 0.99449 0.92942 0.90660 0.86898 0.86645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.34 8.96 71.24 0.64 0.98 16 2 C 0.20 1.68 6.65 41.34 0.28 1.96 16 3 C -0.24 -2.33 9.59 22.02 0.21 -2.12 16 4 C 0.06 1.24 9.81 22.76 0.22 1.46 16 5 C -0.23 -6.70 5.92 -19.72 -0.12 -6.82 16 6 C 0.22 7.95 7.78 137.11 1.07 9.02 16 7 N -0.40 -15.87 10.90 -58.88 -0.64 -16.51 16 8 O 0.07 2.34 11.29 74.59 0.84 3.18 16 9 C 0.19 6.11 7.75 88.36 0.68 6.79 16 10 C -0.02 -0.43 5.84 29.85 0.17 -0.25 16 11 C -0.11 -3.47 5.20 30.59 0.16 -3.32 16 12 C -0.09 -3.62 5.15 30.59 0.16 -3.47 16 13 C 0.02 0.96 4.97 29.85 0.15 1.10 16 14 C -0.54 -30.73 9.11 25.60 0.23 -30.50 16 15 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 16 C -0.01 -0.38 5.46 84.65 0.46 0.08 16 17 N -0.94 -58.33 13.29 21.44 0.28 -58.04 16 18 Si 0.97 44.55 29.54 68.60 2.03 46.57 16 19 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 20 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 22 N -0.49 -16.38 11.30 -302.32 -3.42 -19.80 16 23 C 0.51 15.02 7.43 85.10 0.63 15.65 16 24 O -0.58 -22.26 14.89 -5.20 -0.08 -22.34 16 25 N -0.49 -8.09 2.98 -658.70 -1.96 -10.06 16 26 C 0.04 0.41 9.56 127.77 1.22 1.64 16 27 H 0.12 -0.79 7.80 -2.39 -0.02 -0.81 16 28 H 0.11 -0.55 7.80 -2.39 -0.02 -0.57 16 29 H 0.10 -0.48 7.80 -2.38 -0.02 -0.50 16 30 H 0.20 0.20 7.87 -2.91 -0.02 0.18 16 31 H 0.15 2.72 7.92 -2.91 -0.02 2.70 16 32 H 0.13 2.57 8.14 -2.38 -0.02 2.55 16 33 H 0.13 2.75 8.14 -2.39 -0.02 2.74 16 34 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 38 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 39 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 40 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 41 H 0.07 1.24 6.85 -2.38 -0.02 1.23 16 42 H 0.11 0.35 7.78 -2.39 -0.02 0.33 16 43 H 0.12 0.29 7.79 -2.39 -0.02 0.27 16 Total: -1.00 -90.06 367.49 4.24 -85.82 By element: Atomic # 1 Polarization: -2.04 SS G_CDS: 1.02 Total: -1.03 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: 6.17 Total: -7.80 kcal Atomic # 7 Polarization: -98.68 SS G_CDS: -5.74 Total: -104.41 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: 0.76 Total: -19.16 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -90.06 4.24 -85.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000896228914.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.918 kcal (2) G-P(sol) polarization free energy of solvation -90.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds