Wall clock time and date at job start Tue Mar 31 2020 11:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47105 * 2 1 4 4 C 1.50703 * 109.46874 * 119.99260 * 2 1 3 5 5 O 1.21278 * 119.99866 * 100.00285 * 4 2 1 6 6 N 1.34781 * 120.00101 * 280.00079 * 4 2 1 7 7 C 1.46499 * 119.99874 * 179.97438 * 6 4 2 8 8 C 1.53000 * 109.46840 * 85.00543 * 7 6 4 9 9 C 1.52996 * 109.47328 * 59.99969 * 8 7 6 10 10 C 1.52993 * 109.47473 * 60.00001 * 9 8 7 11 11 C 1.52996 * 109.47469 * 180.02562 * 10 9 8 12 12 C 1.53008 * 109.46733 * 300.00094 * 10 9 8 13 13 C 1.52996 * 109.47409 * 60.00092 * 12 10 9 14 14 S 1.81394 * 109.47714 * 239.99409 * 2 1 3 15 15 O 1.42095 * 108.58218 * 174.48549 * 14 2 1 16 16 O 1.42106 * 108.57699 * 305.51464 * 14 2 1 17 17 C 1.81404 * 101.92120 * 59.99974 * 14 2 1 18 18 C 1.50700 * 109.47145 * 180.02562 * 17 14 2 19 19 H 1.07999 * 120.00005 * 359.97438 * 18 17 14 20 20 C 1.37877 * 119.99962 * 180.02562 * 18 17 14 21 21 N 1.31517 * 119.99868 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00054 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47352 * 89.99889 * 22 20 18 24 24 H 1.48504 * 109.47017 * 210.00056 * 22 20 18 25 25 H 1.48504 * 109.46900 * 329.99642 * 22 20 18 26 26 H 1.09003 * 109.47105 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47769 * 300.00897 * 1 2 3 28 28 H 1.09000 * 109.46924 * 60.00805 * 1 2 3 29 29 H 0.97002 * 119.99716 * 0.02562 * 6 4 2 30 30 H 1.09002 * 109.47391 * 325.00213 * 7 6 4 31 31 H 1.09004 * 109.46724 * 180.02562 * 8 7 6 32 32 H 1.09001 * 109.47194 * 299.99493 * 8 7 6 33 33 H 1.09000 * 109.46870 * 299.99783 * 9 8 7 34 34 H 1.09004 * 109.47108 * 179.97438 * 9 8 7 35 35 H 1.09004 * 109.46998 * 59.99561 * 10 9 8 36 36 H 1.09001 * 109.47364 * 180.02562 * 11 10 9 37 37 H 1.09004 * 109.46785 * 299.99688 * 11 10 9 38 38 H 1.08992 * 109.47346 * 59.99310 * 11 10 9 39 39 H 1.09004 * 109.46943 * 299.99499 * 12 10 9 40 40 H 1.09001 * 109.46630 * 179.97438 * 12 10 9 41 41 H 1.08996 * 109.47452 * 179.97438 * 13 12 10 42 42 H 1.09000 * 109.47054 * 59.99785 * 13 12 10 43 43 H 1.09006 * 109.46998 * 300.00420 * 17 14 2 44 44 H 1.09000 * 109.46994 * 59.99861 * 17 14 2 45 45 H 0.96995 * 119.99830 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 8 2.4063 -1.8615 1.1560 6 7 2.0657 -0.0661 2.4140 7 6 2.5535 -0.7568 3.6104 8 6 4.0783 -0.6493 3.6752 9 6 4.4836 0.8248 3.7365 10 6 3.8735 1.4701 4.9822 11 6 4.2782 2.9443 5.0432 12 6 2.3486 1.3626 4.9174 13 6 1.9433 -0.1114 4.8562 14 16 2.1348 -0.8552 -1.4809 15 8 3.5497 -0.7331 -1.5282 16 8 1.5480 -2.1486 -1.5282 17 6 1.4230 0.1512 -2.8118 18 6 1.8273 -0.4215 -4.1458 19 1 2.4504 -1.3025 -4.1888 20 6 1.4025 0.1799 -5.3115 21 7 0.6449 1.2537 -5.2592 22 14 1.9030 -0.5304 -6.9651 23 1 0.8917 -1.5258 -7.4029 24 1 1.9887 0.5619 -7.9676 25 1 3.2266 -1.1919 -6.8395 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8898 28 1 -0.3633 0.5137 -0.8901 29 1 1.7662 0.8546 2.4737 30 1 2.2647 -1.8070 3.5668 31 1 4.4413 -1.1636 4.5651 32 1 4.5130 -1.1091 2.7876 33 1 4.1206 1.3386 2.8463 34 1 5.5699 0.9013 3.7831 35 1 4.2364 0.9562 5.8724 36 1 3.8439 3.4040 5.9310 37 1 5.3646 3.0212 5.0892 38 1 3.9151 3.4579 4.1531 39 1 1.9857 1.8766 4.0272 40 1 1.9139 1.8220 5.8052 41 1 0.8570 -0.1880 4.8104 42 1 2.3062 -0.6252 5.7463 43 1 0.3361 0.1468 -2.7291 44 1 1.7894 1.1745 -2.7292 45 1 0.3458 1.6766 -6.0793 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905266797.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:59 Heat of formation + Delta-G solvation = -140.024115 kcal Electronic energy + Delta-G solvation = -25723.756287 eV Core-core repulsion = 22060.375523 eV Total energy + Delta-G solvation = -3663.380765 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.45027 -38.49622 -35.97854 -34.98012 -34.49434 -33.54296 -33.19102 -31.11412 -31.00646 -29.02112 -26.54642 -24.71281 -23.57380 -22.95001 -21.64334 -21.10455 -19.32094 -18.01787 -17.54284 -16.91723 -16.29861 -15.81598 -15.43368 -15.34291 -14.94753 -14.73056 -14.49331 -14.34822 -14.16064 -13.91788 -13.50660 -13.17354 -12.79053 -12.60251 -12.51811 -12.40885 -12.20275 -11.95791 -11.84624 -11.76806 -11.75767 -11.43601 -11.37884 -11.04937 -10.99213 -10.87815 -10.78731 -10.59231 -10.49556 -10.30245 -10.14894 -9.89116 -9.76565 -9.14800 -9.05752 -8.70289 -6.33535 -4.42375 0.87768 2.58156 3.02582 3.23571 3.28677 3.35953 3.80316 4.24005 4.35521 4.39818 4.43876 4.45619 4.58608 4.78090 4.90071 4.91694 5.02113 5.08483 5.10972 5.16922 5.22614 5.27764 5.34663 5.35607 5.43709 5.54155 5.58601 5.67203 5.72843 5.74880 5.80882 5.83405 5.96256 6.00315 6.08598 6.12734 6.18689 6.41426 6.63309 6.67428 7.33254 7.49247 7.74559 8.11506 8.59443 9.24621 10.78424 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024934 B = 0.003185 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.700902 B = 8790.221577 C = 8974.995736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.634 4.634 3 H 0.147 0.853 4 C 0.547 3.453 5 O -0.524 6.524 6 N -0.716 5.716 7 C 0.143 3.857 8 C -0.135 4.135 9 C -0.116 4.116 10 C -0.093 4.093 11 C -0.148 4.148 12 C -0.117 4.117 13 C -0.126 4.126 14 S 2.418 3.582 15 O -0.949 6.949 16 O -0.933 6.933 17 C -0.405 4.405 18 C -0.528 4.528 19 H 0.073 0.927 20 C 0.075 3.925 21 N -0.882 5.882 22 Si 0.906 3.094 23 H -0.273 1.273 24 H -0.281 1.281 25 H -0.266 1.266 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.089 0.911 29 H 0.400 0.600 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.089 0.911 44 H 0.085 0.915 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.827 4.946 21.498 22.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.738 4.738 3 H 0.165 0.835 4 C 0.331 3.669 5 O -0.400 6.400 6 N -0.370 5.370 7 C 0.038 3.962 8 C -0.173 4.173 9 C -0.153 4.153 10 C -0.111 4.111 11 C -0.206 4.206 12 C -0.154 4.154 13 C -0.164 4.164 14 S 2.598 3.402 15 O -0.947 6.947 16 O -0.930 6.930 17 C -0.540 4.540 18 C -0.567 4.567 19 H 0.091 0.909 20 C -0.130 4.130 21 N -0.519 5.519 22 Si 0.731 3.269 23 H -0.198 1.198 24 H -0.206 1.206 25 H -0.190 1.190 26 H 0.098 0.902 27 H 0.089 0.911 28 H 0.108 0.892 29 H 0.236 0.764 30 H 0.109 0.891 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.106 0.894 44 H 0.103 0.897 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.537 3.495 21.428 21.765 hybrid contribution -0.428 1.141 -0.610 1.363 sum 1.110 4.635 20.817 21.356 Atomic orbital electron populations 1.21543 0.87952 1.04784 1.04702 1.30984 1.08871 1.15588 1.18310 0.83490 1.19453 0.77217 0.86279 0.83904 1.90838 1.47172 1.16657 1.85305 1.45989 1.66391 1.16720 1.07863 1.20995 0.93820 0.97635 0.83709 1.21954 0.95356 0.97032 1.02960 1.21587 1.00410 0.95503 0.97812 1.21165 0.95140 0.96163 0.98644 1.21837 1.01309 0.95735 1.01693 1.21619 0.95773 0.96083 1.01942 1.21826 1.00895 0.96318 0.97390 1.08719 0.76408 0.78060 0.76963 1.93459 1.28427 1.87408 1.85372 1.93466 1.79114 1.35598 1.84849 1.27617 1.08014 1.08930 1.09389 1.20366 1.34441 1.13817 0.88105 0.90933 1.24919 0.94010 0.94440 0.99661 1.69940 1.33710 1.19245 1.28974 0.86349 0.79769 0.78927 0.81822 1.19847 1.20641 1.18997 0.90161 0.91085 0.89183 0.76404 0.89143 0.90996 0.90851 0.91705 0.91813 0.91163 0.92823 0.92670 0.92599 0.92042 0.91585 0.91170 0.90298 0.89352 0.89713 0.92217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.76 8.92 37.15 0.33 -1.43 16 2 C -0.63 -10.02 3.10 -27.88 -0.09 -10.10 16 3 H 0.15 1.78 8.14 -51.92 -0.42 1.36 16 4 C 0.55 9.00 6.97 -10.98 -0.08 8.92 16 5 O -0.52 -10.88 15.31 -3.36 -0.05 -10.93 16 6 N -0.72 -8.41 4.23 -53.80 -0.23 -8.64 16 7 C 0.14 1.50 2.78 -67.93 -0.19 1.31 16 8 C -0.13 -1.41 5.60 -26.73 -0.15 -1.56 16 9 C -0.12 -1.06 5.05 -26.74 -0.13 -1.20 16 10 C -0.09 -0.66 2.72 -90.62 -0.25 -0.91 16 11 C -0.15 -0.99 9.19 37.16 0.34 -0.65 16 12 C -0.12 -0.77 5.03 -26.73 -0.13 -0.90 16 13 C -0.13 -0.92 5.61 -26.73 -0.15 -1.07 16 14 S 2.42 53.74 3.59 -107.50 -0.39 53.36 16 15 O -0.95 -23.89 18.10 -57.83 -1.05 -24.93 16 16 O -0.93 -23.61 17.40 -62.66 -1.09 -24.70 16 17 C -0.40 -9.58 5.11 36.01 0.18 -9.39 16 18 C -0.53 -14.72 9.13 -34.44 -0.31 -15.03 16 19 H 0.07 2.03 7.71 -52.49 -0.40 1.63 16 20 C 0.08 2.07 5.46 -17.82 -0.10 1.98 16 21 N -0.88 -24.50 13.29 55.43 0.74 -23.76 16 22 Si 0.91 21.09 29.54 -169.99 -5.02 16.07 16 23 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 H 0.08 1.16 8.06 -51.93 -0.42 0.74 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.09 1.14 6.56 -51.93 -0.34 0.80 16 29 H 0.40 3.59 6.87 -40.82 -0.28 3.30 16 30 H 0.09 1.10 7.58 -51.93 -0.39 0.71 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.65 7.60 -51.93 -0.39 0.26 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.06 0.40 6.51 -51.93 -0.34 0.06 16 40 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.09 1.98 6.87 -51.92 -0.36 1.63 16 44 H 0.08 1.92 8.14 -51.92 -0.42 1.49 16 45 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 369.36 15.07 5.57 5.57 Total: -1.00 -35.92 369.36 -9.80 -45.72 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -7.56 Total: 2.28 kcal Atomic # 6 Polarization: -29.31 SS G_CDS: -0.72 Total: -30.03 kcal Atomic # 7 Polarization: -32.91 SS G_CDS: 0.51 Total: -32.40 kcal Atomic # 8 Polarization: -58.38 SS G_CDS: -2.19 Total: -60.57 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 53.74 SS G_CDS: -0.39 Total: 53.36 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.92 -9.80 -45.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905266797.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.301 kcal (2) G-P(sol) polarization free energy of solvation -35.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds