Wall clock time and date at job start Tue Mar 31 2020 11:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47105 * 2 1 4 4 C 1.50703 * 109.46874 * 119.99260 * 2 1 3 5 5 O 1.21278 * 119.99866 * 100.00285 * 4 2 1 6 6 N 1.34781 * 120.00101 * 280.00079 * 4 2 1 7 7 C 1.46499 * 119.99874 * 179.97438 * 6 4 2 8 8 C 1.53000 * 109.46840 * 85.00543 * 7 6 4 9 9 C 1.52996 * 109.47328 * 59.99969 * 8 7 6 10 10 C 1.52993 * 109.47473 * 60.00001 * 9 8 7 11 11 C 1.52996 * 109.47469 * 180.02562 * 10 9 8 12 12 C 1.53008 * 109.46733 * 300.00094 * 10 9 8 13 13 C 1.52996 * 109.47409 * 60.00092 * 12 10 9 14 14 S 1.81394 * 109.47714 * 239.99409 * 2 1 3 15 15 O 1.42095 * 108.58218 * 174.48549 * 14 2 1 16 16 O 1.42106 * 108.57699 * 305.51464 * 14 2 1 17 17 C 1.81404 * 101.92120 * 59.99974 * 14 2 1 18 18 C 1.50700 * 109.47145 * 180.02562 * 17 14 2 19 19 H 1.07999 * 120.00005 * 359.97438 * 18 17 14 20 20 C 1.37877 * 119.99962 * 180.02562 * 18 17 14 21 21 N 1.31517 * 119.99868 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00054 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47352 * 89.99889 * 22 20 18 24 24 H 1.48504 * 109.47017 * 210.00056 * 22 20 18 25 25 H 1.48504 * 109.46900 * 329.99642 * 22 20 18 26 26 H 1.09003 * 109.47105 * 180.02562 * 1 2 3 27 27 H 1.08992 * 109.47769 * 300.00897 * 1 2 3 28 28 H 1.09000 * 109.46924 * 60.00805 * 1 2 3 29 29 H 0.97002 * 119.99716 * 0.02562 * 6 4 2 30 30 H 1.09002 * 109.47391 * 325.00213 * 7 6 4 31 31 H 1.09004 * 109.46724 * 180.02562 * 8 7 6 32 32 H 1.09001 * 109.47194 * 299.99493 * 8 7 6 33 33 H 1.09000 * 109.46870 * 299.99783 * 9 8 7 34 34 H 1.09004 * 109.47108 * 179.97438 * 9 8 7 35 35 H 1.09004 * 109.46998 * 59.99561 * 10 9 8 36 36 H 1.09001 * 109.47364 * 180.02562 * 11 10 9 37 37 H 1.09004 * 109.46785 * 299.99688 * 11 10 9 38 38 H 1.08992 * 109.47346 * 59.99310 * 11 10 9 39 39 H 1.09004 * 109.46943 * 299.99499 * 12 10 9 40 40 H 1.09001 * 109.46630 * 179.97438 * 12 10 9 41 41 H 1.08996 * 109.47452 * 179.97438 * 13 12 10 42 42 H 1.09000 * 109.47054 * 59.99785 * 13 12 10 43 43 H 1.09006 * 109.46998 * 300.00420 * 17 14 2 44 44 H 1.09000 * 109.46994 * 59.99861 * 17 14 2 45 45 H 0.96995 * 119.99830 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 1.2306 5 8 2.4063 -1.8615 1.1560 6 7 2.0657 -0.0661 2.4140 7 6 2.5535 -0.7568 3.6104 8 6 4.0783 -0.6493 3.6752 9 6 4.4836 0.8248 3.7365 10 6 3.8735 1.4701 4.9822 11 6 4.2782 2.9443 5.0432 12 6 2.3486 1.3626 4.9174 13 6 1.9433 -0.1114 4.8562 14 16 2.1348 -0.8552 -1.4809 15 8 3.5497 -0.7331 -1.5282 16 8 1.5480 -2.1486 -1.5282 17 6 1.4230 0.1512 -2.8118 18 6 1.8273 -0.4215 -4.1458 19 1 2.4504 -1.3025 -4.1888 20 6 1.4025 0.1799 -5.3115 21 7 0.6449 1.2537 -5.2592 22 14 1.9030 -0.5304 -6.9651 23 1 0.8917 -1.5258 -7.4029 24 1 1.9887 0.5619 -7.9676 25 1 3.2266 -1.1919 -6.8395 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8898 28 1 -0.3633 0.5137 -0.8901 29 1 1.7662 0.8546 2.4737 30 1 2.2647 -1.8070 3.5668 31 1 4.4413 -1.1636 4.5651 32 1 4.5130 -1.1091 2.7876 33 1 4.1206 1.3386 2.8463 34 1 5.5699 0.9013 3.7831 35 1 4.2364 0.9562 5.8724 36 1 3.8439 3.4040 5.9310 37 1 5.3646 3.0212 5.0892 38 1 3.9151 3.4579 4.1531 39 1 1.9857 1.8766 4.0272 40 1 1.9139 1.8220 5.8052 41 1 0.8570 -0.1880 4.8104 42 1 2.3062 -0.6252 5.7463 43 1 0.3361 0.1468 -2.7291 44 1 1.7894 1.1745 -2.7292 45 1 0.3458 1.6766 -6.0793 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905266797.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:23:58 Heat of formation + Delta-G solvation = -166.054693 kcal Electronic energy + Delta-G solvation = -25724.885058 eV Core-core repulsion = 22060.375523 eV Total energy + Delta-G solvation = -3664.509535 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.53239 -39.46082 -37.85980 -36.84681 -35.57126 -35.38113 -34.54794 -31.91978 -31.76188 -30.98108 -27.25295 -25.86295 -25.58619 -23.63111 -22.62198 -22.01017 -20.17727 -19.67580 -19.18073 -18.53143 -17.76730 -17.20157 -16.98700 -16.59941 -16.39492 -16.13573 -15.72707 -15.46280 -15.10765 -14.85137 -14.48036 -14.30253 -14.11673 -14.00848 -13.85815 -13.43276 -13.37166 -13.22543 -13.04734 -12.97302 -12.91190 -12.87208 -12.70485 -12.52044 -12.43814 -12.39288 -12.08419 -11.80542 -11.63873 -11.42532 -11.28439 -11.13805 -11.00315 -10.85266 -10.75606 -10.18958 -8.41354 -6.56782 -0.86708 1.28891 1.38249 1.38952 1.51155 1.84060 2.13521 2.32571 2.91909 2.97228 3.16977 3.43096 3.71300 3.73927 3.79068 3.81517 3.93346 4.13641 4.20324 4.45720 4.48258 4.54764 4.58527 4.60858 4.63368 4.70668 4.74333 4.76343 4.86935 5.00916 5.02726 5.09376 5.11996 5.14183 5.21735 5.25056 5.36993 5.39633 5.43973 5.46732 5.59310 5.74414 6.26419 6.50406 6.97020 7.13195 8.70902 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024934 B = 0.003185 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.700902 B = 8790.221577 C = 8974.995736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.603 4.603 3 H 0.193 0.807 4 C 0.539 3.461 5 O -0.576 6.576 6 N -0.690 5.690 7 C 0.137 3.863 8 C -0.134 4.134 9 C -0.115 4.115 10 C -0.088 4.088 11 C -0.148 4.148 12 C -0.115 4.115 13 C -0.116 4.116 14 S 2.416 3.584 15 O -0.993 6.993 16 O -0.978 6.978 17 C -0.411 4.411 18 C -0.567 4.567 19 H 0.054 0.946 20 C 0.032 3.968 21 N -0.902 5.902 22 Si 0.957 3.043 23 H -0.264 1.264 24 H -0.263 1.263 25 H -0.270 1.270 26 H 0.064 0.936 27 H 0.119 0.881 28 H 0.098 0.902 29 H 0.418 0.582 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.033 0.967 33 H 0.054 0.946 34 H 0.061 0.939 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.065 0.935 40 H 0.085 0.915 41 H 0.080 0.920 42 H 0.093 0.907 43 H 0.099 0.901 44 H 0.094 0.906 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.357 7.183 23.634 24.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.714 4.714 3 H 0.211 0.789 4 C 0.323 3.677 5 O -0.456 6.456 6 N -0.343 5.343 7 C 0.033 3.967 8 C -0.173 4.173 9 C -0.153 4.153 10 C -0.106 4.106 11 C -0.205 4.205 12 C -0.153 4.153 13 C -0.154 4.154 14 S 2.604 3.396 15 O -0.990 6.990 16 O -0.975 6.975 17 C -0.545 4.545 18 C -0.606 4.606 19 H 0.072 0.928 20 C -0.172 4.172 21 N -0.539 5.539 22 Si 0.780 3.220 23 H -0.189 1.189 24 H -0.188 1.188 25 H -0.195 1.195 26 H 0.084 0.916 27 H 0.138 0.862 28 H 0.117 0.883 29 H 0.257 0.743 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.103 0.897 41 H 0.099 0.901 42 H 0.112 0.888 43 H 0.117 0.883 44 H 0.112 0.888 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 0.362 5.751 23.521 24.217 hybrid contribution -0.061 0.490 -1.120 1.225 sum 0.301 6.242 22.400 23.256 Atomic orbital electron populations 1.21746 0.85419 1.04829 1.07549 1.30540 1.10840 1.16471 1.13586 0.78931 1.19573 0.77121 0.85796 0.85178 1.90833 1.49736 1.18993 1.86057 1.45852 1.64468 1.17274 1.06746 1.21184 0.93988 0.97047 0.84511 1.21938 0.95316 0.98111 1.01918 1.21592 1.00537 0.94374 0.98766 1.21132 0.95632 0.96341 0.97495 1.21827 1.01238 0.95279 1.02151 1.21648 0.95118 0.95441 1.03084 1.21797 1.01252 0.96709 0.95644 1.08116 0.75383 0.77646 0.78474 1.93399 1.30864 1.87912 1.86832 1.93406 1.79407 1.38309 1.86360 1.27579 1.08682 1.09331 1.08893 1.20707 1.35092 1.14003 0.90778 0.92820 1.25685 0.93897 0.94800 1.02792 1.69971 1.33950 1.19729 1.30211 0.85559 0.79314 0.78909 0.78223 1.18893 1.18777 1.19453 0.91649 0.86247 0.88293 0.74271 0.91183 0.89272 0.94793 0.92704 0.92059 0.90389 0.91587 0.93007 0.92873 0.91679 0.89652 0.90129 0.88833 0.88307 0.88770 0.91538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 8.92 71.98 0.64 -2.66 16 2 C -0.60 -18.12 3.10 29.85 0.09 -18.03 16 3 H 0.19 4.01 8.14 -2.39 -0.02 3.99 16 4 C 0.54 17.33 6.97 87.66 0.61 17.94 16 5 O -0.58 -24.72 15.31 5.50 0.08 -24.64 16 6 N -0.69 -14.75 4.23 -442.52 -1.87 -16.63 16 7 C 0.14 2.67 2.78 44.99 0.13 2.80 16 8 C -0.13 -2.76 5.60 30.59 0.17 -2.59 16 9 C -0.12 -1.94 5.05 30.59 0.15 -1.79 16 10 C -0.09 -0.98 2.72 -10.79 -0.03 -1.01 16 11 C -0.15 -1.53 9.19 71.98 0.66 -0.87 16 12 C -0.12 -1.04 5.03 30.60 0.15 -0.89 16 13 C -0.12 -1.28 5.61 30.59 0.17 -1.11 16 14 S 2.42 110.59 3.59 -56.49 -0.20 110.39 16 15 O -0.99 -52.20 18.10 -127.37 -2.30 -54.51 16 16 O -0.98 -51.93 17.40 -122.75 -2.14 -54.07 16 17 C -0.41 -19.74 5.11 71.24 0.36 -19.38 16 18 C -0.57 -32.51 9.13 25.60 0.23 -32.28 16 19 H 0.05 3.18 7.71 -2.91 -0.02 3.15 16 20 C 0.03 1.76 5.46 84.65 0.46 2.23 16 21 N -0.90 -49.81 13.29 21.45 0.28 -49.52 16 22 Si 0.96 43.31 29.54 68.60 2.03 45.34 16 23 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 24 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 25 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 26 H 0.06 1.81 8.06 -2.39 -0.02 1.79 16 27 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.10 2.25 6.56 -2.39 -0.02 2.23 16 29 H 0.42 5.89 6.87 -92.71 -0.64 5.25 16 30 H 0.07 1.70 7.58 -2.39 -0.02 1.68 16 31 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.05 1.02 7.60 -2.39 -0.02 1.00 16 34 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 35 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 38 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.06 0.55 6.51 -2.39 -0.02 0.54 16 40 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.08 0.78 8.14 -2.39 -0.02 0.77 16 42 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.10 4.46 6.87 -2.39 -0.02 4.44 16 44 H 0.09 4.26 8.14 -2.39 -0.02 4.24 16 45 H 0.28 14.08 8.31 -92.71 -0.77 13.31 16 Total: -1.00 -82.72 369.36 0.03 -82.69 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: 0.34 Total: 18.58 kcal Atomic # 6 Polarization: -61.45 SS G_CDS: 3.81 Total: -57.63 kcal Atomic # 7 Polarization: -64.56 SS G_CDS: -1.59 Total: -66.15 kcal Atomic # 8 Polarization: -128.86 SS G_CDS: -4.36 Total: -133.21 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: 110.59 SS G_CDS: -0.20 Total: 110.39 kcal Total: -82.72 0.03 -82.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905266797.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.362 kcal (2) G-P(sol) polarization free energy of solvation -82.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds