Wall clock time and date at job start Tue Mar 31 2020 11:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46617 * 2 1 4 4 C 1.53002 * 109.46617 * 179.97438 * 3 2 1 5 5 C 1.53000 * 109.47377 * 60.00336 * 4 3 2 6 6 N 1.46502 * 109.46894 * 59.99588 * 5 4 3 7 7 C 1.46500 * 120.00197 * 0.82057 * 6 5 4 8 8 C 1.34785 * 119.99570 * 180.82149 * 6 5 4 9 9 O 1.21273 * 119.99871 * 359.72421 * 8 6 5 10 10 C 1.50700 * 119.99290 * 180.02562 * 8 6 5 11 11 S 1.81405 * 109.46753 * 179.97438 * 10 8 6 12 12 O 1.42101 * 108.57777 * 294.48806 * 11 10 8 13 13 O 1.42105 * 108.57427 * 65.51280 * 11 10 8 14 14 C 1.81397 * 101.92302 * 179.97438 * 11 10 8 15 15 C 1.50700 * 109.47085 * 180.02562 * 14 11 10 16 16 H 1.08004 * 120.00042 * 0.02562 * 15 14 11 17 17 C 1.37875 * 120.00084 * 179.97438 * 15 14 11 18 18 N 1.31514 * 119.99817 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 120.00388 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.47324 * 89.99939 * 19 17 15 21 21 H 1.48501 * 109.47592 * 210.00242 * 19 17 15 22 22 H 1.48499 * 109.46940 * 330.00190 * 19 17 15 23 23 C 1.53005 * 109.46815 * 299.99970 * 5 4 3 24 24 C 1.52997 * 109.46872 * 240.00456 * 2 1 3 25 25 H 1.08997 * 109.47102 * 60.00158 * 1 2 3 26 26 H 1.09002 * 109.46708 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47026 * 299.99592 * 1 2 3 28 28 H 1.08997 * 109.47102 * 119.99841 * 2 1 3 29 29 H 1.08995 * 109.47090 * 60.00447 * 3 2 1 30 30 H 1.08997 * 109.47255 * 299.99748 * 3 2 1 31 31 H 1.08997 * 109.47102 * 299.99841 * 4 3 2 32 32 H 1.09002 * 109.46708 * 180.02562 * 4 3 2 33 33 H 1.08996 * 109.47359 * 179.97438 * 5 4 3 34 34 H 1.09001 * 109.46673 * 264.07791 * 7 6 5 35 35 H 1.08998 * 109.46954 * 24.07691 * 7 6 5 36 36 H 1.09004 * 109.46650 * 144.07823 * 7 6 5 37 37 H 1.08994 * 109.47585 * 299.99339 * 10 8 6 38 38 H 1.08997 * 109.47365 * 60.00391 * 10 8 6 39 39 H 1.08997 * 109.47076 * 299.99990 * 14 11 10 40 40 H 1.09000 * 109.47067 * 60.00029 * 14 11 10 41 41 H 0.97008 * 120.00321 * 179.97438 * 18 17 15 42 42 H 1.08995 * 109.46932 * 179.97438 * 23 5 4 43 43 H 1.09005 * 109.47063 * 299.99724 * 23 5 4 44 44 H 1.09002 * 109.47307 * 299.99453 * 24 2 1 45 45 H 1.08997 * 109.47759 * 59.99788 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0805 0.7212 -1.2483 6 7 3.5926 1.4117 -2.4447 7 6 2.7651 2.6132 -2.3109 8 6 3.9051 0.9415 -3.6686 9 8 4.5942 -0.0503 -3.7794 10 6 3.4036 1.6521 -4.8993 11 16 3.9894 0.7832 -6.3801 12 8 5.4054 0.8885 -6.4364 13 8 3.3873 -0.5034 -6.4178 14 6 3.2808 1.7914 -7.7112 15 6 3.6701 1.2079 -9.0450 16 1 4.2823 0.3192 -9.0876 17 6 3.2440 1.8081 -10.2108 18 7 2.4982 2.8900 -10.1589 19 14 3.7260 1.0845 -11.8641 20 1 2.7013 0.0977 -12.2903 21 1 3.8166 2.1708 -12.8725 22 1 5.0433 0.4096 -11.7439 23 6 3.5705 -0.7213 -1.2483 24 6 2.0399 -0.7211 -1.2493 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9564 -0.8900 31 1 3.9329 0.9289 0.8908 32 1 3.9332 2.4703 0.0011 33 1 5.1705 0.7216 -1.2481 34 1 1.7123 2.3382 -2.3751 35 1 2.9598 3.0828 -1.3467 36 1 3.0076 3.3123 -3.1113 37 1 2.3138 1.6652 -4.8927 38 1 3.7793 2.6753 -4.9065 39 1 2.1945 1.7997 -7.6218 40 1 3.6593 2.8108 -7.6357 41 1 2.1987 3.3126 -10.9791 42 1 3.9338 -1.2351 -2.1383 43 1 3.9335 -1.2351 -0.3581 44 1 1.6767 -1.7489 -1.2493 45 1 1.6766 -0.2074 -2.1393 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905268402.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:22:21 Heat of formation + Delta-G solvation = -133.817886 kcal Electronic energy + Delta-G solvation = -25964.745119 eV Core-core repulsion = 22301.633477 eV Total energy + Delta-G solvation = -3663.111642 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.84242 -39.39396 -37.78483 -36.80429 -36.12003 -35.38936 -33.30598 -32.08845 -31.16098 -30.67486 -28.28857 -26.40956 -25.54183 -23.67012 -22.75267 -21.20285 -20.02936 -19.61529 -18.91908 -18.33155 -17.59607 -17.40251 -17.10473 -16.75288 -16.45505 -16.07005 -15.80146 -15.36379 -15.07526 -14.75872 -14.45827 -14.35543 -14.12991 -14.01814 -13.72940 -13.55303 -13.38649 -13.21329 -12.96795 -12.92087 -12.86576 -12.77401 -12.71902 -12.53913 -12.43358 -12.36159 -11.92945 -11.87798 -11.74755 -11.40733 -11.15412 -11.10019 -10.94484 -10.76293 -10.67796 -9.70927 -8.41242 -6.56444 -0.82433 1.32466 1.38371 1.38939 1.51389 1.79205 2.17178 2.32683 2.92656 2.92914 3.25589 3.37716 3.73116 3.78396 3.81380 3.96086 4.12647 4.16497 4.22635 4.30049 4.44902 4.47362 4.54712 4.58613 4.67177 4.75721 4.78263 4.79554 4.84632 4.88530 5.00069 5.08899 5.11304 5.17535 5.21633 5.26953 5.37746 5.39947 5.43505 5.54956 5.67564 5.74931 6.15008 6.51498 6.87532 7.13648 8.71092 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.026506 B = 0.003197 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.110050 B = 8755.654358 C = 8919.559098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.142 4.142 4 C -0.116 4.116 5 C 0.142 3.858 6 N -0.588 5.588 7 C 0.046 3.954 8 C 0.529 3.471 9 O -0.578 6.578 10 C -0.643 4.643 11 S 2.428 3.572 12 O -0.988 6.988 13 O -0.988 6.988 14 C -0.415 4.415 15 C -0.567 4.567 16 H 0.055 0.945 17 C 0.030 3.970 18 N -0.904 5.904 19 Si 0.958 3.042 20 H -0.264 1.264 21 H -0.264 1.264 22 H -0.270 1.270 23 C -0.142 4.142 24 C -0.111 4.111 25 H 0.051 0.949 26 H 0.047 0.953 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.063 0.937 34 H 0.081 0.919 35 H 0.115 0.885 36 H 0.086 0.914 37 H 0.194 0.806 38 H 0.198 0.802 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.275 0.725 42 H 0.045 0.955 43 H 0.084 0.916 44 H 0.052 0.948 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.611 4.394 24.287 25.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.104 4.104 3 C -0.178 4.178 4 C -0.153 4.153 5 C 0.040 3.960 6 N -0.320 5.320 7 C -0.095 4.095 8 C 0.316 3.684 9 O -0.459 6.459 10 C -0.773 4.773 11 S 2.615 3.385 12 O -0.985 6.985 13 O -0.985 6.985 14 C -0.549 4.549 15 C -0.605 4.605 16 H 0.073 0.927 17 C -0.173 4.173 18 N -0.541 5.541 19 Si 0.781 3.219 20 H -0.189 1.189 21 H -0.189 1.189 22 H -0.194 1.194 23 C -0.181 4.181 24 C -0.149 4.149 25 H 0.070 0.930 26 H 0.066 0.934 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.103 0.897 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.133 0.867 36 H 0.104 0.896 37 H 0.211 0.789 38 H 0.215 0.785 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.084 0.916 42 H 0.064 0.936 43 H 0.103 0.897 44 H 0.071 0.929 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -4.824 3.264 24.170 24.862 hybrid contribution -0.117 0.010 -1.134 1.140 sum -4.941 3.273 23.036 23.786 Atomic orbital electron populations 1.21814 0.94764 1.01592 1.02170 1.21097 0.95741 0.96645 0.96915 1.22298 0.94283 0.96466 1.04792 1.21826 0.96936 1.01360 0.95176 1.21231 0.97834 0.92254 0.84686 1.47827 1.51377 1.28854 1.03984 1.22706 0.95016 0.85748 1.06001 1.19614 0.79844 0.83681 0.85218 1.90800 1.40365 1.27804 1.86900 1.30729 1.16539 1.16904 1.13170 1.07647 0.75381 0.77313 0.78161 1.93405 1.30687 1.87755 1.86667 1.93406 1.79203 1.39151 1.86727 1.27601 1.08439 1.09585 1.09274 1.20733 1.35644 1.13280 0.90853 0.92686 1.25702 0.93872 0.94886 1.02887 1.69977 1.34392 1.19533 1.30176 0.85544 0.79311 0.78864 0.78192 1.18936 1.18854 1.19419 1.21965 0.96930 0.96743 1.02432 1.21534 0.94422 1.00203 0.98700 0.92991 0.93369 0.91319 0.90902 0.89714 0.89040 0.89068 0.89164 0.91907 0.90085 0.86719 0.89573 0.78867 0.78496 0.88736 0.88674 0.91585 0.93589 0.89724 0.92907 0.93539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.19 71.98 0.66 -1.14 16 2 C -0.09 -1.15 2.72 -10.79 -0.03 -1.18 16 3 C -0.14 -1.38 4.54 30.60 0.14 -1.24 16 4 C -0.12 -1.26 4.91 30.59 0.15 -1.11 16 5 C 0.14 2.89 2.94 44.99 0.13 3.02 16 6 N -0.59 -12.91 2.25 -822.57 -1.85 -14.76 16 7 C 0.05 0.55 8.00 127.77 1.02 1.57 16 8 C 0.53 17.06 7.40 87.66 0.65 17.70 16 9 O -0.58 -24.77 13.68 -0.14 0.00 -24.78 16 10 C -0.64 -18.19 4.92 71.24 0.35 -17.84 16 11 S 2.43 108.34 3.88 -56.49 -0.22 108.12 16 12 O -0.99 -51.58 17.94 -125.68 -2.25 -53.84 16 13 O -0.99 -51.56 17.95 -125.82 -2.26 -53.82 16 14 C -0.42 -19.75 5.56 71.24 0.40 -19.35 16 15 C -0.57 -32.40 9.13 25.60 0.23 -32.16 16 16 H 0.05 3.24 7.71 -2.91 -0.02 3.22 16 17 C 0.03 1.66 5.46 84.65 0.46 2.12 16 18 N -0.90 -50.16 13.29 21.45 0.28 -49.88 16 19 Si 0.96 43.43 29.54 68.60 2.03 45.46 16 20 H -0.26 -11.53 7.11 99.48 0.71 -10.83 16 21 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 22 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 23 C -0.14 -3.36 5.23 30.61 0.16 -3.20 16 24 C -0.11 -2.29 5.05 30.61 0.15 -2.14 16 25 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.09 0.84 3.66 -2.39 -0.01 0.83 16 31 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.09 0.69 6.89 -2.39 -0.02 0.67 16 33 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.08 0.78 6.70 -2.39 -0.02 0.77 16 35 H 0.11 0.77 4.95 -2.39 -0.01 0.76 16 36 H 0.09 0.83 6.69 -2.38 -0.02 0.81 16 37 H 0.19 3.87 8.11 -2.39 -0.02 3.85 16 38 H 0.20 3.83 7.42 -2.39 -0.02 3.82 16 39 H 0.09 4.24 8.14 -2.39 -0.02 4.22 16 40 H 0.10 4.25 8.14 -2.39 -0.02 4.23 16 41 H 0.28 14.13 8.31 -92.70 -0.77 13.36 16 42 H 0.05 1.51 6.12 -2.39 -0.01 1.49 16 43 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 44 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.05 1.09 7.61 -2.39 -0.02 1.07 16 Total: -1.00 -85.04 358.63 1.18 -83.85 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 0.98 Total: 14.60 kcal Atomic # 6 Polarization: -59.43 SS G_CDS: 4.48 Total: -54.95 kcal Atomic # 7 Polarization: -63.07 SS G_CDS: -1.57 Total: -64.64 kcal Atomic # 8 Polarization: -127.92 SS G_CDS: -4.52 Total: -132.43 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: 108.34 SS G_CDS: -0.22 Total: 108.12 kcal Total: -85.04 1.18 -83.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905268402.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.964 kcal (2) G-P(sol) polarization free energy of solvation -85.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds