Wall clock time and date at job start Tue Mar 31 2020 11:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.33672 * 125.80181 * 2 1 4 4 C 1.34217 * 110.90594 * 179.97438 * 3 2 1 5 5 C 1.50699 * 125.43595 * 179.97438 * 4 3 2 6 6 C 1.52997 * 109.47078 * 240.02471 * 5 4 3 7 7 C 1.52992 * 109.46956 * 120.02158 * 5 4 3 8 8 C 1.53006 * 109.46866 * 0.02562 * 5 4 3 9 9 C 1.34182 * 109.12692 * 0.24029 * 4 3 2 10 10 C 1.36424 * 125.80457 * 179.97438 * 2 1 3 11 11 C 1.47369 * 127.19066 * 0.02997 * 10 2 1 12 12 O 1.21638 * 120.00294 * 359.97438 * 11 10 2 13 13 N 1.34777 * 119.99585 * 180.02562 * 11 10 2 14 14 C 1.40560 * 119.99465 * 180.02562 * 13 11 10 15 15 C 1.40658 * 126.08570 * 0.02562 * 14 13 11 16 16 N 1.30911 * 108.38706 * 180.02562 * 15 14 13 17 17 N 1.40065 * 108.41226 * 0.02562 * 16 15 14 18 18 C 1.37316 * 126.07184 * 180.02562 * 17 16 15 19 19 H 1.07997 * 120.00147 * 179.97438 * 18 17 16 20 20 C 1.38989 * 119.99840 * 359.97438 * 18 17 16 21 21 N 1.31290 * 119.99998 * 359.97438 * 20 18 17 22 22 Si 1.86805 * 120.00068 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47045 * 89.99908 * 22 20 18 24 24 H 1.48501 * 109.47127 * 210.00032 * 22 20 18 25 25 H 1.48499 * 109.46777 * 330.00020 * 22 20 18 26 26 C 1.35693 * 126.08054 * 179.71374 * 14 13 11 27 27 H 1.08991 * 109.47301 * 0.03268 * 1 2 3 28 28 H 1.08998 * 109.46413 * 120.03250 * 1 2 3 29 29 H 1.08999 * 109.47156 * 240.02370 * 1 2 3 30 30 H 1.09002 * 109.47153 * 299.99793 * 6 5 4 31 31 H 1.09001 * 109.46832 * 179.97438 * 6 5 4 32 32 H 1.09004 * 109.47261 * 59.99965 * 6 5 4 33 33 H 1.09001 * 109.47066 * 180.02562 * 7 5 4 34 34 H 1.08996 * 109.47747 * 299.99900 * 7 5 4 35 35 H 1.09002 * 109.47103 * 60.00312 * 7 5 4 36 36 H 1.08993 * 109.46955 * 300.00219 * 8 5 4 37 37 H 1.09000 * 109.47050 * 60.00048 * 8 5 4 38 38 H 1.09001 * 109.47002 * 179.97438 * 8 5 4 39 39 H 1.08000 * 127.02142 * 179.72168 * 9 4 3 40 40 H 0.96993 * 120.00447 * 359.97438 * 13 11 10 41 41 H 1.07993 * 125.80841 * 0.02970 * 15 14 13 42 42 H 0.97004 * 120.00559 * 179.97438 * 21 20 18 43 43 H 1.07993 * 126.24615 * 359.97438 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2890 1.0841 0.0000 4 6 3.5860 0.7391 0.0006 5 6 4.7460 1.7011 0.0002 6 6 5.5990 1.4710 -1.2490 7 6 5.5989 1.4719 1.2495 8 6 4.2177 3.1371 -0.0003 9 6 3.6850 -0.5990 -0.0044 10 6 2.3051 -1.1064 0.0005 11 6 1.8741 -2.5157 0.0005 12 8 0.6889 -2.7893 0.0005 13 7 2.7933 -3.5014 0.0016 14 6 2.3822 -4.8455 0.0010 15 6 1.0529 -5.3053 -0.0011 16 7 1.0687 -6.6143 -0.0003 17 7 2.4029 -7.0406 0.0028 18 6 2.8353 -8.3439 0.0039 19 1 3.8930 -8.5620 0.0060 20 6 1.9116 -9.3825 0.0024 21 7 0.6257 -9.1174 0.0004 22 14 2.4997 -11.1556 0.0047 23 1 2.6524 -11.6246 1.4053 24 1 1.5062 -12.0075 -0.6972 25 1 3.8079 -11.2440 -0.6924 26 6 3.1972 -5.9304 -0.0035 27 1 -0.3633 1.0276 -0.0006 28 1 -0.3632 -0.5144 -0.8897 29 1 -0.3633 -0.5135 0.8902 30 1 5.9753 0.4480 -1.2486 31 1 6.4377 2.1671 -1.2494 32 1 4.9913 1.6343 -2.1391 33 1 6.4377 2.1680 1.2494 34 1 4.9914 1.6359 2.1394 35 1 5.9753 0.4490 1.2498 36 1 3.6100 3.3003 -0.8902 37 1 3.6101 3.3009 0.8897 38 1 5.0568 3.8329 -0.0001 39 1 4.5929 -1.1839 -0.0095 40 1 3.7384 -3.2833 0.0019 41 1 0.1695 -4.6842 -0.0030 42 1 -0.0190 -9.8422 -0.0010 43 1 4.2770 -5.9179 -0.0078 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931192402.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:56:48 Heat of formation + Delta-G solvation = 24.850624 kcal Electronic energy + Delta-G solvation = -25822.275579 eV Core-core repulsion = 22062.893119 eV Total energy + Delta-G solvation = -3759.382460 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.67744 -41.65766 -40.01376 -37.89364 -35.94583 -35.01329 -34.01215 -32.34503 -32.19701 -29.76084 -28.23849 -28.13396 -27.67551 -26.75015 -24.44565 -22.88302 -22.62823 -21.58352 -21.15894 -20.09267 -19.23936 -17.88680 -17.43975 -17.43101 -16.97132 -16.67333 -15.96221 -15.89233 -15.54683 -15.08326 -15.05668 -14.85943 -14.85085 -14.64401 -14.03330 -13.99169 -13.84489 -13.48574 -13.29573 -13.12915 -13.04603 -12.91095 -12.86021 -12.82417 -12.56353 -12.15118 -12.08285 -11.94228 -11.85851 -11.74255 -11.01642 -10.88129 -10.77094 -10.76545 -10.10004 -9.40820 -8.51711 -8.46849 -6.23852 0.31082 1.01602 1.31052 1.39975 1.58055 1.67388 1.74415 2.06706 2.13058 2.33165 2.68310 2.92408 3.09395 3.34776 3.75450 3.86212 3.97848 4.00843 4.09243 4.29658 4.42932 4.54871 4.57805 4.61994 4.65467 4.76312 4.79046 4.87368 4.89265 5.00018 5.01065 5.01580 5.07327 5.11146 5.17703 5.25805 5.28812 5.40293 5.41666 5.42318 5.46851 5.95590 6.07111 6.31496 6.72599 6.74786 7.36263 7.46375 7.67669 8.52725 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025600 B = 0.002585 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.496273 B =10828.645810 C =11725.777264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.068 3.932 3 O -0.171 6.171 4 C 0.002 3.998 5 C 0.014 3.986 6 C -0.140 4.140 7 C -0.140 4.140 8 C -0.143 4.143 9 C -0.187 4.187 10 C -0.254 4.254 11 C 0.571 3.429 12 O -0.572 6.572 13 N -0.610 5.610 14 C -0.044 4.044 15 C -0.059 4.059 16 N -0.309 5.309 17 N -0.167 5.167 18 C -0.353 4.353 19 H 0.141 0.859 20 C -0.008 4.008 21 N -0.825 5.825 22 Si 1.020 2.980 23 H -0.264 1.264 24 H -0.277 1.277 25 H -0.244 1.244 26 C -0.081 4.081 27 H 0.101 0.899 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.088 0.912 32 H 0.052 0.948 33 H 0.088 0.912 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.085 0.915 39 H 0.174 0.826 40 H 0.416 0.584 41 H 0.169 0.831 42 H 0.276 0.724 43 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.390 21.962 -0.039 25.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.014 3.986 3 O -0.068 6.068 4 C -0.046 4.046 5 C 0.014 3.986 6 C -0.197 4.197 7 C -0.197 4.197 8 C -0.200 4.200 9 C -0.206 4.206 10 C -0.259 4.259 11 C 0.361 3.639 12 O -0.453 6.453 13 N -0.253 5.253 14 C -0.150 4.150 15 C -0.234 4.234 16 N -0.141 5.141 17 N 0.064 4.936 18 C -0.485 4.485 19 H 0.159 0.841 20 C -0.219 4.219 21 N -0.453 5.453 22 Si 0.839 3.161 23 H -0.189 1.189 24 H -0.202 1.202 25 H -0.167 1.167 26 C -0.232 4.232 27 H 0.120 0.880 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.071 0.929 33 H 0.107 0.893 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.104 0.896 39 H 0.192 0.808 40 H 0.253 0.747 41 H 0.186 0.814 42 H 0.086 0.914 43 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 10.570 20.926 -0.040 23.444 hybrid contribution 0.540 -0.296 0.013 0.616 sum 11.110 20.630 -0.027 23.431 Atomic orbital electron populations 1.20466 0.82813 1.04716 1.04581 1.23012 0.94701 0.82977 0.97883 1.83719 1.17159 1.34412 1.71477 1.22767 0.82394 0.94802 1.04682 1.19367 0.88254 0.92442 0.98538 1.21957 0.99489 1.03299 0.94931 1.21954 0.99489 1.03297 0.94935 1.21862 1.01942 0.94068 1.02128 1.22699 0.95953 0.94030 1.07877 1.21010 0.95127 0.92151 1.17598 1.17566 0.85056 0.84460 0.76799 1.90642 1.18173 1.84117 1.52393 1.42187 1.09859 1.01993 1.71287 1.17337 0.92490 0.83885 1.21260 1.24180 0.97406 0.92499 1.09297 1.78142 0.97885 1.10596 1.27502 1.44843 1.03090 1.05305 1.40372 1.20630 0.95662 0.78167 1.53992 0.84123 1.26907 0.94662 1.06215 0.94131 1.70401 1.02468 1.35115 1.37310 0.84579 0.79054 0.73230 0.79245 1.18866 1.20200 1.16662 1.21963 0.97625 0.85321 1.18243 0.87992 0.89427 0.89424 0.91729 0.89281 0.92891 0.89283 0.92895 0.91736 0.92754 0.92760 0.89632 0.80815 0.74730 0.81396 0.91378 0.79525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.66 9.14 71.24 0.65 -1.01 16 2 C 0.07 1.86 7.37 25.26 0.19 2.04 16 3 O -0.17 -4.13 9.91 4.27 0.04 -4.09 16 4 C 0.00 0.04 5.67 24.76 0.14 0.18 16 5 C 0.01 0.19 0.92 -52.93 -0.05 0.14 16 6 C -0.14 -1.54 8.34 71.98 0.60 -0.94 16 7 C -0.14 -1.54 8.34 71.98 0.60 -0.94 16 8 C -0.14 -1.71 8.01 71.98 0.58 -1.13 16 9 C -0.19 -4.31 9.78 23.65 0.23 -4.08 16 10 C -0.25 -7.76 6.31 -18.99 -0.12 -7.88 16 11 C 0.57 22.12 7.78 86.65 0.67 22.79 16 12 O -0.57 -26.07 12.81 -4.15 -0.05 -26.12 16 13 N -0.61 -23.05 5.46 -306.89 -1.68 -24.73 16 14 C -0.04 -2.09 6.90 37.74 0.26 -1.83 16 15 C -0.06 -3.31 10.85 85.42 0.93 -2.38 16 16 N -0.31 -19.09 10.40 -56.46 -0.59 -19.68 16 17 N -0.17 -9.48 3.74 -190.00 -0.71 -10.19 16 18 C -0.35 -18.98 10.25 84.01 0.86 -18.11 16 19 H 0.14 6.52 7.83 -2.91 -0.02 6.50 16 20 C -0.01 -0.40 5.50 84.95 0.47 0.06 16 21 N -0.82 -48.32 11.81 21.66 0.26 -48.07 16 22 Si 1.02 38.96 29.55 68.60 2.03 40.99 16 23 H -0.26 -9.69 7.11 99.48 0.71 -8.99 16 24 H -0.28 -10.48 7.11 99.48 0.71 -9.77 16 25 H -0.24 -8.40 7.11 99.48 0.71 -7.70 16 26 C -0.08 -3.87 11.49 83.38 0.96 -2.91 16 27 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.09 2.25 8.08 -2.39 -0.02 2.23 16 29 H 0.09 2.25 8.08 -2.39 -0.02 2.23 16 30 H 0.06 0.71 7.97 -2.39 -0.02 0.69 16 31 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 33 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.06 0.71 7.98 -2.39 -0.02 0.69 16 36 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.17 3.08 7.74 -2.91 -0.02 3.06 16 40 H 0.42 12.07 8.00 -92.71 -0.74 11.33 16 41 H 0.17 9.52 5.91 -2.91 -0.02 9.50 16 42 H 0.28 14.86 8.31 -92.71 -0.77 14.09 16 43 H 0.19 7.01 8.06 -2.91 -0.02 6.99 16 Total: -1.00 -77.32 364.75 6.56 -70.76 By element: Atomic # 1 Polarization: 36.82 SS G_CDS: 0.29 Total: 37.11 kcal Atomic # 6 Polarization: -22.95 SS G_CDS: 6.97 Total: -15.99 kcal Atomic # 7 Polarization: -99.94 SS G_CDS: -2.72 Total: -102.66 kcal Atomic # 8 Polarization: -30.20 SS G_CDS: -0.01 Total: -30.21 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 2.03 Total: 40.99 kcal Total: -77.32 6.56 -70.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931192402.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.611 kcal (2) G-P(sol) polarization free energy of solvation -77.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds