Wall clock time and date at job start Tue Mar 31 2020 11:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 119.99979 * 2 1 4 4 H 1.48504 * 109.47358 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47225 * 300.00088 * 3 2 1 6 6 H 1.48506 * 109.47098 * 60.00055 * 3 2 1 7 7 C 1.38818 * 120.00072 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99647 * 189.10131 * 7 2 1 9 9 N 1.36934 * 119.99924 * 9.10355 * 7 2 1 10 10 C 1.48148 * 127.84058 * 15.56860 * 9 7 2 11 11 C 1.54390 * 104.61777 * 140.41523 * 10 9 7 12 12 H 1.09000 * 117.61390 * 242.76618 * 11 10 9 13 13 C 1.54150 * 104.96649 * 23.83223 * 11 10 9 14 14 H 1.08995 * 121.78715 * 222.20071 * 13 11 10 15 15 C 1.48143 * 127.83839 * 195.57397 * 9 7 2 16 16 C 1.52999 * 118.12057 * 87.19548 * 11 10 9 17 17 H 1.08993 * 117.44217 * 16.06014 * 16 11 10 18 18 N 1.46497 * 117.44103 * 160.81267 * 16 11 10 19 19 C 1.34774 * 119.99841 * 205.44065 * 18 16 11 20 20 O 1.21283 * 119.99897 * 359.71993 * 19 18 16 21 21 C 1.50696 * 120.00286 * 179.72422 * 19 18 16 22 22 C 1.50704 * 109.47624 * 179.97438 * 21 19 18 23 23 C 1.35449 * 126.77536 * 89.70500 * 22 21 19 24 24 C 1.41379 * 103.98317 * 179.91475 * 23 22 21 25 25 C 1.50707 * 126.79960 * 180.09610 * 24 23 22 26 26 C 1.52996 * 117.49932 * 344.03410 * 25 24 23 27 27 C 1.52997 * 117.49632 * 275.37292 * 25 24 23 28 28 N 1.30167 * 106.39736 * 0.35669 * 24 23 22 29 29 O 1.20922 * 111.60591 * 359.77051 * 28 24 23 30 30 H 0.96991 * 120.00277 * 359.97438 * 1 2 3 31 31 H 1.09004 * 110.40383 * 21.63391 * 10 9 7 32 32 H 1.08997 * 110.40971 * 259.20272 * 10 9 7 33 33 H 1.09004 * 110.40611 * 338.36448 * 15 9 7 34 34 H 1.09001 * 110.41228 * 100.67945 * 15 9 7 35 35 H 0.96995 * 120.00167 * 25.16336 * 18 16 11 36 36 H 1.09001 * 109.47089 * 299.99778 * 21 19 18 37 37 H 1.09003 * 109.47435 * 59.99379 * 21 19 18 38 38 H 1.08005 * 128.01077 * 0.02562 * 23 22 21 39 39 H 1.09002 * 115.54486 * 129.70840 * 25 24 23 40 40 H 1.08992 * 117.49911 * 0.02562 * 26 25 24 41 41 H 1.09004 * 117.49335 * 145.02238 * 26 25 24 42 42 H 1.08997 * 117.49834 * 214.97964 * 27 25 24 43 43 H 1.08993 * 117.50521 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0801 -1.2079 0.1485 9 7 1.3386 -2.3807 -0.1866 10 6 -0.0341 -2.5711 -0.7102 11 6 0.0639 -3.8174 -1.6163 12 1 -0.1483 -3.6884 -2.6776 13 6 1.2856 -4.5966 -1.0906 14 1 2.0088 -5.0540 -1.7657 15 6 1.8196 -3.7545 0.0888 16 6 -0.1183 -5.1932 -0.9723 17 1 -0.5674 -5.2278 0.0202 18 7 -0.4525 -6.3132 -1.8556 19 6 -1.1109 -7.3831 -1.3676 20 8 -1.4223 -7.4209 -0.1961 21 6 -1.4601 -8.5324 -2.2776 22 6 -2.1874 -9.5927 -1.4914 23 6 -3.5251 -9.6856 -1.2997 24 6 -3.6766 -10.8448 -0.5047 25 6 -4.9694 -11.4250 0.0083 26 6 -6.2089 -10.5289 -0.0266 27 6 -5.5343 -10.8510 1.3092 28 7 -2.4778 -11.3084 -0.2989 29 8 -1.6378 -10.6265 -0.8389 30 1 -0.4850 0.8399 0.0004 31 1 -0.3432 -1.7022 -1.2913 32 1 -0.7317 -2.7500 0.1080 33 1 2.9091 -3.7785 0.1107 34 1 1.4132 -4.1175 1.0329 35 1 -0.2034 -6.2829 -2.7926 36 1 -2.0997 -8.1754 -3.0848 37 1 -0.5468 -8.9541 -2.6973 38 1 -4.2973 -9.0276 -1.6701 39 1 -5.1126 -12.4897 -0.1761 40 1 -6.0895 -9.5198 -0.4210 41 1 -7.1678 -11.0042 -0.2335 42 1 -6.0496 -11.5379 1.9804 43 1 -4.9707 -10.0540 1.7942 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960248725.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:30 Heat of formation + Delta-G solvation = 114.942273 kcal Electronic energy + Delta-G solvation = -25223.401561 eV Core-core repulsion = 21467.925768 eV Total energy + Delta-G solvation = -3755.475793 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.09216 -39.95637 -38.42075 -37.85233 -34.57307 -33.91390 -33.15085 -32.63812 -30.40936 -28.63519 -27.18553 -25.63001 -24.88365 -23.21474 -22.44249 -22.08508 -20.80689 -20.43800 -19.74958 -19.33971 -17.95666 -17.52529 -16.93365 -16.79861 -16.35587 -15.98195 -15.46229 -14.87024 -14.73647 -14.36375 -14.05915 -13.70942 -13.53624 -13.25246 -12.80377 -12.62710 -12.33079 -12.25401 -11.90597 -11.76263 -11.56930 -11.53892 -11.33253 -11.02432 -10.87373 -10.73622 -10.43538 -10.26091 -10.19844 -10.09642 -9.94905 -9.77389 -9.52081 -9.23922 -8.77721 -8.41516 -6.90116 -5.82871 -3.17147 1.23303 1.97954 2.44967 2.73819 3.15141 3.33781 3.36134 3.42177 3.44617 3.81916 4.14979 4.24969 4.43813 4.46525 4.51810 4.61917 4.70911 4.77628 4.89588 4.97947 5.10486 5.23829 5.27413 5.31587 5.34303 5.42168 5.49858 5.52556 5.69543 5.76320 5.78907 5.81510 5.86263 6.07531 6.16709 6.48458 6.66789 6.71592 6.86065 7.30469 7.42983 7.49683 7.68455 8.09834 8.12151 8.17078 9.07891 9.70526 10.47172 11.31635 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.026956 B = 0.002154 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.477093 B =12993.479917 C =13527.008203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.226 4.226 8 H 0.078 0.922 9 N -0.593 5.593 10 C 0.184 3.816 11 C -0.179 4.179 12 H 0.104 0.896 13 C -0.181 4.181 14 H 0.104 0.896 15 C 0.155 3.845 16 C 0.094 3.906 17 H 0.132 0.868 18 N -0.694 5.694 19 C 0.516 3.484 20 O -0.527 6.527 21 C -0.061 4.061 22 C -0.007 4.007 23 C -0.213 4.213 24 C 0.048 3.952 25 C -0.088 4.088 26 C -0.163 4.163 27 C -0.163 4.163 28 N -0.358 5.358 29 O 0.107 5.893 30 H 0.254 0.746 31 H 0.092 0.908 32 H 0.026 0.974 33 H 0.052 0.948 34 H 0.028 0.972 35 H 0.401 0.599 36 H 0.128 0.872 37 H 0.120 0.880 38 H 0.170 0.830 39 H 0.122 0.878 40 H 0.100 0.900 41 H 0.104 0.896 42 H 0.103 0.897 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.029 -21.009 -7.894 24.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.317 5.317 10 C 0.058 3.942 11 C -0.200 4.200 12 H 0.122 0.878 13 C -0.202 4.202 14 H 0.122 0.878 15 C 0.028 3.972 16 C -0.012 4.012 17 H 0.149 0.851 18 N -0.343 5.343 19 C 0.301 3.699 20 O -0.403 6.403 21 C -0.102 4.102 22 C -0.072 4.072 23 C -0.234 4.234 24 C -0.111 4.111 25 C -0.107 4.107 26 C -0.200 4.200 27 C -0.201 4.201 28 N -0.060 5.060 29 O 0.039 5.961 30 H 0.064 0.936 31 H 0.110 0.890 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.046 0.954 35 H 0.235 0.765 36 H 0.146 0.854 37 H 0.138 0.862 38 H 0.188 0.812 39 H 0.140 0.860 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.121 0.879 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.770 -21.817 -6.322 24.349 hybrid contribution 0.109 1.443 -0.981 1.748 sum -8.661 -20.374 -7.303 23.312 Atomic orbital electron populations 1.69899 1.05067 1.25373 1.55801 1.24913 0.95664 0.98029 1.01730 0.86032 0.78876 0.83458 0.77289 1.20343 1.21614 1.21659 1.19044 0.90865 0.82241 1.43302 0.90434 1.45189 1.13333 1.00019 1.73119 1.21073 0.86984 0.92433 0.93688 1.24638 1.02281 0.92477 1.00593 0.87818 1.24353 0.90438 1.02350 1.03058 0.87841 1.21138 0.97295 0.85824 0.92962 1.21876 0.98727 0.84833 0.95721 0.85089 1.45298 1.57989 1.18032 1.12980 1.20177 0.78100 0.82987 0.88653 1.90778 1.52734 1.79633 1.17128 1.20125 1.02844 0.90356 0.96906 1.23500 0.92666 0.92314 0.98677 1.22264 0.96087 1.00270 1.04788 1.22570 0.93449 0.95266 0.99778 1.20093 0.88675 0.98843 1.03060 1.23042 0.95446 1.00685 1.00839 1.23051 1.02959 1.03534 0.90556 1.73791 0.99364 1.17160 1.15708 1.84823 1.32675 1.29716 1.48845 0.93557 0.89013 0.95642 0.92946 0.95439 0.76529 0.85378 0.86160 0.81234 0.86029 0.88130 0.87806 0.87892 0.88243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.53 10.86 55.49 0.60 -25.93 16 2 C -0.01 -0.17 5.40 -17.43 -0.09 -0.27 16 3 Si 0.91 21.69 29.56 -169.99 -5.03 16.67 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.23 -6.24 10.35 -15.06 -0.16 -6.39 16 8 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 9 N -0.59 -15.02 3.38 -168.82 -0.57 -15.59 16 10 C 0.18 4.34 5.70 -2.41 -0.01 4.32 16 11 C -0.18 -3.19 7.05 -89.29 -0.63 -3.82 16 12 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 13 C -0.18 -3.09 7.05 -89.26 -0.63 -3.72 16 14 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 15 C 0.15 3.22 7.04 -2.38 -0.02 3.21 16 16 C 0.09 1.50 5.98 -67.93 -0.41 1.09 16 17 H 0.13 2.44 7.40 -51.93 -0.38 2.06 16 18 N -0.69 -8.04 5.56 -53.81 -0.30 -8.34 16 19 C 0.52 6.30 7.82 -10.99 -0.09 6.22 16 20 O -0.53 -9.15 15.60 5.56 0.09 -9.07 16 21 C -0.06 -0.46 6.27 -29.03 -0.18 -0.64 16 22 C -0.01 -0.08 5.98 -35.30 -0.21 -0.29 16 23 C -0.21 -2.22 10.40 -39.38 -0.41 -2.63 16 24 C 0.05 0.56 6.95 -82.10 -0.57 -0.01 16 25 C -0.09 -0.79 6.33 -91.77 -0.58 -1.37 16 26 C -0.16 -1.14 10.05 -26.69 -0.27 -1.41 16 27 C -0.16 -1.35 10.24 -26.69 -0.27 -1.62 16 28 N -0.36 -4.92 12.07 33.42 0.40 -4.51 16 29 O 0.11 1.40 11.20 17.18 0.19 1.59 16 30 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 31 H 0.09 2.40 6.51 -51.93 -0.34 2.06 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.40 3.22 8.83 -40.82 -0.36 2.86 16 36 H 0.13 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.12 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.17 1.36 7.62 -52.48 -0.40 0.96 16 39 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.10 0.71 7.33 -51.93 -0.38 0.33 16 41 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 365.58 15.07 5.51 5.51 Total: -1.00 -34.60 365.58 -9.69 -44.29 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -6.06 Total: 2.73 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: -4.53 Total: -7.34 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: 0.14 Total: -54.38 kcal Atomic # 8 Polarization: -7.75 SS G_CDS: 0.28 Total: -7.47 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.03 Total: 16.67 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.60 -9.69 -44.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960248725.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.232 kcal (2) G-P(sol) polarization free energy of solvation -34.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds