Wall clock time and date at job start Tue Mar 31 2020 11:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 119.99979 * 2 1 4 4 H 1.48504 * 109.47358 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47225 * 300.00088 * 3 2 1 6 6 H 1.48506 * 109.47098 * 60.00055 * 3 2 1 7 7 C 1.38818 * 120.00072 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99647 * 189.10131 * 7 2 1 9 9 N 1.36934 * 119.99924 * 9.10355 * 7 2 1 10 10 C 1.48148 * 127.84058 * 15.56860 * 9 7 2 11 11 C 1.54390 * 104.61777 * 140.41523 * 10 9 7 12 12 H 1.09000 * 117.61390 * 242.76618 * 11 10 9 13 13 C 1.54150 * 104.96649 * 23.83223 * 11 10 9 14 14 H 1.08995 * 121.78715 * 222.20071 * 13 11 10 15 15 C 1.48143 * 127.83839 * 195.57397 * 9 7 2 16 16 C 1.52999 * 118.12057 * 87.19548 * 11 10 9 17 17 H 1.08993 * 117.44217 * 16.06014 * 16 11 10 18 18 N 1.46497 * 117.44103 * 160.81267 * 16 11 10 19 19 C 1.34774 * 119.99841 * 205.44065 * 18 16 11 20 20 O 1.21283 * 119.99897 * 359.71993 * 19 18 16 21 21 C 1.50696 * 120.00286 * 179.72422 * 19 18 16 22 22 C 1.50704 * 109.47624 * 179.97438 * 21 19 18 23 23 C 1.35449 * 126.77536 * 89.70500 * 22 21 19 24 24 C 1.41379 * 103.98317 * 179.91475 * 23 22 21 25 25 C 1.50707 * 126.79960 * 180.09610 * 24 23 22 26 26 C 1.52996 * 117.49932 * 344.03410 * 25 24 23 27 27 C 1.52997 * 117.49632 * 275.37292 * 25 24 23 28 28 N 1.30167 * 106.39736 * 0.35669 * 24 23 22 29 29 O 1.20922 * 111.60591 * 359.77051 * 28 24 23 30 30 H 0.96991 * 120.00277 * 359.97438 * 1 2 3 31 31 H 1.09004 * 110.40383 * 21.63391 * 10 9 7 32 32 H 1.08997 * 110.40971 * 259.20272 * 10 9 7 33 33 H 1.09004 * 110.40611 * 338.36448 * 15 9 7 34 34 H 1.09001 * 110.41228 * 100.67945 * 15 9 7 35 35 H 0.96995 * 120.00167 * 25.16336 * 18 16 11 36 36 H 1.09001 * 109.47089 * 299.99778 * 21 19 18 37 37 H 1.09003 * 109.47435 * 59.99379 * 21 19 18 38 38 H 1.08005 * 128.01077 * 0.02562 * 23 22 21 39 39 H 1.09002 * 115.54486 * 129.70840 * 25 24 23 40 40 H 1.08992 * 117.49911 * 0.02562 * 26 25 24 41 41 H 1.09004 * 117.49335 * 145.02238 * 26 25 24 42 42 H 1.08997 * 117.49834 * 214.97964 * 27 25 24 43 43 H 1.08993 * 117.50521 * 359.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0103 -1.2022 0.0005 8 1 3.0801 -1.2079 0.1485 9 7 1.3386 -2.3807 -0.1866 10 6 -0.0341 -2.5711 -0.7102 11 6 0.0639 -3.8174 -1.6163 12 1 -0.1483 -3.6884 -2.6776 13 6 1.2856 -4.5966 -1.0906 14 1 2.0088 -5.0540 -1.7657 15 6 1.8196 -3.7545 0.0888 16 6 -0.1183 -5.1932 -0.9723 17 1 -0.5674 -5.2278 0.0202 18 7 -0.4525 -6.3132 -1.8556 19 6 -1.1109 -7.3831 -1.3676 20 8 -1.4223 -7.4209 -0.1961 21 6 -1.4601 -8.5324 -2.2776 22 6 -2.1874 -9.5927 -1.4914 23 6 -3.5251 -9.6856 -1.2997 24 6 -3.6766 -10.8448 -0.5047 25 6 -4.9694 -11.4250 0.0083 26 6 -6.2089 -10.5289 -0.0266 27 6 -5.5343 -10.8510 1.3092 28 7 -2.4778 -11.3084 -0.2989 29 8 -1.6378 -10.6265 -0.8389 30 1 -0.4850 0.8399 0.0004 31 1 -0.3432 -1.7022 -1.2913 32 1 -0.7317 -2.7500 0.1080 33 1 2.9091 -3.7785 0.1107 34 1 1.4132 -4.1175 1.0329 35 1 -0.2034 -6.2829 -2.7926 36 1 -2.0997 -8.1754 -3.0848 37 1 -0.5468 -8.9541 -2.6973 38 1 -4.2973 -9.0276 -1.6701 39 1 -5.1126 -12.4897 -0.1761 40 1 -6.0895 -9.5198 -0.4210 41 1 -7.1678 -11.0042 -0.2335 42 1 -6.0496 -11.5379 1.9804 43 1 -4.9707 -10.0540 1.7942 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960248725.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:29 Heat of formation + Delta-G solvation = 92.242206 kcal Electronic energy + Delta-G solvation = -25224.385909 eV Core-core repulsion = 21467.925768 eV Total energy + Delta-G solvation = -3756.460141 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.94793 -41.15012 -39.83539 -38.50616 -36.10866 -34.74308 -34.33983 -33.87909 -32.15286 -29.54262 -28.91710 -27.50165 -25.64813 -24.13007 -23.58096 -22.97019 -22.00551 -21.88793 -20.88732 -20.58548 -18.91588 -18.82365 -18.39647 -17.79884 -17.51436 -16.81729 -16.67209 -16.33782 -15.68857 -15.48052 -15.21770 -15.03324 -14.78108 -14.63963 -14.31105 -13.76304 -13.40858 -13.34841 -13.11553 -13.01066 -12.87323 -12.75068 -12.54039 -12.43254 -12.10774 -12.04972 -12.00955 -11.88197 -11.66384 -11.38017 -11.21676 -10.86678 -10.72474 -10.68866 -10.35511 -9.71378 -8.93313 -7.92781 -5.29645 0.40160 1.16767 1.47194 1.47633 1.49819 1.59009 1.89690 2.24569 2.48347 2.69080 2.86107 3.12466 3.27991 3.44359 3.58507 3.74512 3.83259 3.84016 3.94006 3.98252 4.07370 4.09902 4.14556 4.29244 4.38701 4.39812 4.53219 4.61645 4.68171 4.74874 4.82938 4.89937 4.93684 4.98867 5.06538 5.08950 5.18621 5.28857 5.41887 5.44765 5.54666 5.64661 6.16142 6.51387 6.99791 7.21746 7.26496 7.66324 8.44584 9.21350 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.026956 B = 0.002154 C = 0.002069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1038.477093 B =12993.479917 C =13527.008203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.064 4.064 3 Si 0.982 3.018 4 H -0.264 1.264 5 H -0.288 1.288 6 H -0.294 1.294 7 C -0.240 4.240 8 H 0.083 0.917 9 N -0.618 5.618 10 C 0.186 3.814 11 C -0.175 4.175 12 H 0.134 0.866 13 C -0.165 4.165 14 H 0.140 0.860 15 C 0.146 3.854 16 C 0.116 3.884 17 H 0.099 0.901 18 N -0.675 5.675 19 C 0.516 3.484 20 O -0.586 6.586 21 C -0.048 4.048 22 C -0.015 4.015 23 C -0.219 4.219 24 C 0.038 3.962 25 C -0.104 4.104 26 C -0.142 4.142 27 C -0.173 4.173 28 N -0.394 5.394 29 O 0.086 5.914 30 H 0.250 0.750 31 H 0.060 0.940 32 H -0.008 1.008 33 H 0.063 0.937 34 H 0.014 0.986 35 H 0.425 0.575 36 H 0.174 0.826 37 H 0.157 0.843 38 H 0.193 0.807 39 H 0.131 0.869 40 H 0.101 0.899 41 H 0.129 0.871 42 H 0.120 0.880 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.857 -22.154 -10.513 26.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.257 4.257 3 Si 0.810 3.190 4 H -0.188 1.188 5 H -0.215 1.215 6 H -0.221 1.221 7 C -0.368 4.368 8 H 0.100 0.900 9 N -0.342 5.342 10 C 0.060 3.940 11 C -0.196 4.196 12 H 0.151 0.849 13 C -0.186 4.186 14 H 0.158 0.842 15 C 0.020 3.980 16 C 0.008 3.992 17 H 0.117 0.883 18 N -0.326 5.326 19 C 0.304 3.696 20 O -0.465 6.465 21 C -0.087 4.087 22 C -0.079 4.079 23 C -0.240 4.240 24 C -0.120 4.120 25 C -0.123 4.123 26 C -0.179 4.179 27 C -0.210 4.210 28 N -0.100 5.100 29 O 0.022 5.978 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.010 0.990 33 H 0.081 0.919 34 H 0.032 0.968 35 H 0.263 0.737 36 H 0.192 0.808 37 H 0.175 0.825 38 H 0.211 0.789 39 H 0.149 0.851 40 H 0.119 0.881 41 H 0.147 0.853 42 H 0.138 0.862 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.560 -22.995 -9.000 26.135 hybrid contribution 0.018 1.758 -0.067 1.759 sum -8.543 -21.237 -9.067 24.621 Atomic orbital electron populations 1.70099 1.06580 1.25753 1.57200 1.25777 0.96525 1.01392 1.02050 0.84967 0.78299 0.78998 0.76760 1.18798 1.21465 1.22104 1.19433 0.91401 0.83455 1.42550 0.89963 1.45509 1.13854 1.01123 1.73707 1.20819 0.85884 0.94062 0.93191 1.24309 1.03620 0.90811 1.00812 0.84852 1.24251 0.91136 1.01746 1.01459 0.84226 1.21277 0.98010 0.84562 0.94146 1.21326 0.97520 0.85274 0.95037 0.88308 1.45037 1.57591 1.16453 1.13537 1.21007 0.76589 0.83614 0.88436 1.90778 1.54901 1.80771 1.20037 1.20315 1.05225 0.87298 0.95911 1.24139 0.93195 0.92252 0.98277 1.22661 0.96815 1.00112 1.04451 1.23130 0.93795 0.95638 0.99410 1.20271 0.88560 0.99735 1.03758 1.23162 0.95499 1.00397 0.98891 1.23085 1.03373 1.03421 0.91165 1.73773 1.00307 1.18666 1.17257 1.84764 1.33043 1.30598 1.49425 0.94064 0.92146 0.99008 0.91881 0.96818 0.73682 0.80843 0.82518 0.78944 0.85098 0.88099 0.85307 0.86170 0.90495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.94 10.86 21.65 0.24 -56.71 16 2 C -0.06 -3.61 5.40 84.86 0.46 -3.15 16 3 Si 0.98 45.15 29.56 68.60 2.03 47.17 16 4 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 5 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 6 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 7 C -0.24 -13.39 10.35 84.04 0.87 -12.52 16 8 H 0.08 4.39 7.84 -2.91 -0.02 4.36 16 9 N -0.62 -31.92 3.38 -688.03 -2.32 -34.24 16 10 C 0.19 9.08 5.70 86.53 0.49 9.57 16 11 C -0.17 -6.01 7.05 -9.93 -0.07 -6.08 16 12 H 0.13 3.83 8.14 -2.39 -0.02 3.81 16 13 C -0.16 -5.28 7.05 -9.91 -0.07 -5.35 16 14 H 0.14 3.55 8.14 -2.39 -0.02 3.53 16 15 C 0.15 6.07 7.04 86.55 0.61 6.68 16 16 C 0.12 3.53 5.98 44.99 0.27 3.80 16 17 H 0.10 3.77 7.40 -2.39 -0.02 3.75 16 18 N -0.68 -13.33 5.56 -442.54 -2.46 -15.79 16 19 C 0.52 11.26 7.82 87.66 0.69 11.95 16 20 O -0.59 -20.12 15.60 -3.04 -0.05 -20.16 16 21 C -0.05 -0.52 6.27 29.10 0.18 -0.34 16 22 C -0.01 -0.29 5.98 25.04 0.15 -0.14 16 23 C -0.22 -4.25 10.40 22.40 0.23 -4.01 16 24 C 0.04 0.88 6.95 43.58 0.30 1.18 16 25 C -0.10 -1.80 6.33 -11.54 -0.07 -1.87 16 26 C -0.14 -1.73 10.05 30.62 0.31 -1.42 16 27 C -0.17 -2.77 10.24 30.62 0.31 -2.45 16 28 N -0.39 -10.97 12.07 -49.57 -0.60 -11.57 16 29 O 0.09 2.23 11.20 71.65 0.80 3.03 16 30 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 31 H 0.06 3.29 6.51 -2.39 -0.02 3.28 16 32 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 33 H 0.06 2.46 8.14 -2.38 -0.02 2.44 16 34 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.42 4.58 8.83 -92.71 -0.82 3.76 16 36 H 0.17 0.39 8.14 -2.39 -0.02 0.38 16 37 H 0.16 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.19 2.60 7.62 -2.91 -0.02 2.57 16 39 H 0.13 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.10 1.22 7.33 -2.39 -0.02 1.21 16 41 H 0.13 0.93 8.14 -2.38 -0.02 0.91 16 42 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -81.46 365.58 2.52 -78.94 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 0.22 Total: 13.49 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: 4.66 Total: -4.17 kcal Atomic # 7 Polarization: -113.15 SS G_CDS: -5.15 Total: -118.30 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: 0.75 Total: -17.13 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.17 kcal Total: -81.46 2.52 -78.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960248725.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.180 kcal (2) G-P(sol) polarization free energy of solvation -81.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds