Wall clock time and date at job start Tue Mar 31 2020 11:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35651 * 117.00181 * 2 1 4 4 C 1.39347 * 120.53804 * 0.02562 * 3 2 1 5 5 C 1.38300 * 118.43774 * 179.97438 * 4 3 2 6 6 C 1.50702 * 120.27406 * 179.97438 * 5 4 3 7 7 C 1.38762 * 119.44956 * 0.02562 * 5 4 3 8 8 N 1.31377 * 121.06537 * 359.72452 * 7 5 4 9 9 C 1.32863 * 121.69225 * 0.56476 * 8 7 5 10 10 C 1.47835 * 119.78135 * 179.71316 * 9 8 7 11 11 O 1.21552 * 119.99733 * 179.72881 * 10 9 8 12 12 N 1.34770 * 120.00044 * 359.72883 * 10 9 8 13 13 C 1.46500 * 120.00133 * 179.97438 * 12 10 9 14 14 H 1.08992 * 115.51475 * 350.42111 * 13 12 10 15 15 C 1.53001 * 117.44472 * 204.99927 * 13 12 10 16 16 H 1.09002 * 119.53743 * 5.75715 * 15 13 12 17 17 C 1.54390 * 118.12269 * 160.85944 * 15 13 12 18 18 N 1.48140 * 104.61976 * 89.20474 * 17 15 13 19 19 C 1.36936 * 127.83547 * 140.41411 * 18 17 15 20 20 H 1.08001 * 120.00581 * 344.76578 * 19 18 17 21 21 C 1.38818 * 120.00148 * 164.76416 * 19 18 17 22 22 N 1.31616 * 119.99609 * 351.33316 * 21 19 18 23 23 Si 1.86797 * 120.00268 * 171.32615 * 21 19 18 24 24 H 1.48501 * 109.47072 * 84.99972 * 23 21 19 25 25 H 1.48506 * 109.47120 * 325.00344 * 23 21 19 26 26 H 1.48494 * 109.47321 * 204.99822 * 23 21 19 27 27 C 1.48141 * 104.32691 * 320.67556 * 18 17 15 28 28 C 1.53991 * 104.81764 * 39.27498 * 27 18 17 29 29 H 1.08999 * 118.03000 * 115.98356 * 28 27 18 30 30 H 1.08995 * 109.47049 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47353 * 300.00188 * 1 2 3 32 32 H 1.09000 * 109.46971 * 60.00281 * 1 2 3 33 33 H 1.07999 * 120.78143 * 359.97438 * 4 3 2 34 34 H 1.08998 * 109.47420 * 89.99971 * 6 5 4 35 35 H 1.09006 * 109.47215 * 209.99821 * 6 5 4 36 36 H 1.08994 * 109.47498 * 329.99938 * 6 5 4 37 37 H 1.08002 * 119.46699 * 179.97438 * 7 5 4 38 38 H 0.97005 * 120.00279 * 0.02562 * 12 10 9 39 39 H 1.09001 * 110.40422 * 330.41760 * 17 15 13 40 40 H 1.08998 * 110.50649 * 208.04405 * 17 15 13 41 41 H 0.97005 * 119.99916 * 180.02562 * 22 21 19 42 42 H 1.09000 * 110.41049 * 158.10498 * 27 18 17 43 43 H 1.08998 * 110.40933 * 280.54404 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2969 2.3844 0.0005 5 6 1.9696 3.5928 0.0011 6 6 1.2019 4.8896 0.0011 7 6 3.3572 3.6012 0.0005 8 7 4.0419 2.4800 0.0049 9 6 3.4409 1.2951 -0.0011 10 6 4.2531 0.0598 -0.0022 11 8 3.7074 -1.0263 -0.0027 12 7 5.5986 0.1380 -0.0027 13 6 6.4034 -1.0861 -0.0033 14 1 5.8510 -2.0113 0.1604 15 6 7.8193 -0.9993 0.5701 16 1 8.1524 -0.0748 1.0417 17 6 8.5134 -2.3108 0.9965 18 7 9.2082 -2.7804 -0.2246 19 6 10.4485 -3.3532 -0.3177 20 1 11.1372 -3.2877 0.5116 21 6 10.8207 -4.0182 -1.4779 22 7 9.9301 -4.2474 -2.4195 23 14 12.5854 -4.5877 -1.7030 24 1 12.7644 -5.9123 -1.0560 25 1 13.5064 -3.6037 -1.0793 26 1 12.8884 -4.6998 -3.1524 27 6 8.2595 -2.4838 -1.3231 28 6 7.6501 -1.1173 -0.9590 29 1 7.8433 -0.2764 -1.6251 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 0.2174 2.3528 0.0005 34 1 1.0164 5.2021 1.0287 35 1 1.7829 5.6558 -0.5124 36 1 0.2512 4.7491 -0.5131 37 1 3.8827 4.5447 0.0005 38 1 6.0341 1.0048 -0.0019 39 1 7.7745 -3.0443 1.3193 40 1 9.2322 -2.1207 1.7935 41 1 10.1900 -4.7124 -3.2302 42 1 8.7872 -2.4220 -2.2748 43 1 7.4803 -3.2447 -1.3682 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960316228.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:44 Heat of formation + Delta-G solvation = 30.656543 kcal Electronic energy + Delta-G solvation = -25654.762073 eV Core-core repulsion = 21895.631377 eV Total energy + Delta-G solvation = -3759.130696 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.21607 -39.28627 -38.54142 -37.94993 -34.39027 -34.06189 -32.42776 -31.29795 -30.14281 -28.49501 -27.55579 -27.07021 -25.55190 -23.94641 -22.99263 -21.81664 -20.50120 -20.23998 -19.12684 -18.23146 -17.72929 -17.46090 -16.77505 -16.27562 -15.87637 -15.43416 -14.82646 -14.65125 -14.42726 -14.18934 -14.12602 -13.92972 -13.50998 -13.19775 -13.05689 -12.99901 -12.65975 -12.60970 -12.12304 -11.78803 -11.78277 -11.44417 -11.34436 -10.93792 -10.77847 -10.32295 -10.28778 -10.13236 -10.06974 -9.91116 -9.71206 -9.65833 -9.10120 -8.75102 -8.66428 -8.08281 -6.80217 -5.73564 -3.07830 0.36948 0.89118 2.69985 2.83591 3.14824 3.42477 3.47231 3.49361 3.63192 3.98026 4.14675 4.35347 4.39347 4.50240 4.52121 4.56678 4.70548 4.79524 5.03720 5.04915 5.08220 5.20197 5.22916 5.44278 5.45309 5.49143 5.51394 5.66839 5.69403 5.91250 5.99094 6.01379 6.27771 6.36213 6.62306 6.76668 6.87169 6.94134 6.98883 7.41259 7.45503 7.61255 7.78110 7.80439 8.27063 8.41753 9.16860 9.79616 10.57250 11.40684 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.028310 B = 0.002420 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.827198 B =11566.715075 C =12077.460441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.270 6.270 3 C 0.143 3.857 4 C -0.180 4.180 5 C -0.075 4.075 6 C -0.115 4.115 7 C 0.057 3.943 8 N -0.416 5.416 9 C 0.041 3.959 10 C 0.573 3.427 11 O -0.515 6.515 12 N -0.680 5.680 13 C 0.093 3.907 14 H 0.134 0.866 15 C -0.178 4.178 16 H 0.102 0.898 17 C 0.155 3.845 18 N -0.594 5.594 19 C -0.226 4.226 20 H 0.076 0.924 21 C -0.007 4.007 22 N -0.915 5.915 23 Si 0.913 3.087 24 H -0.287 1.287 25 H -0.281 1.281 26 H -0.290 1.290 27 C 0.185 3.815 28 C -0.179 4.179 29 H 0.103 0.897 30 H 0.107 0.893 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.146 0.854 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.164 0.836 38 H 0.407 0.593 39 H 0.027 0.973 40 H 0.051 0.949 41 H 0.254 0.746 42 H 0.091 0.909 43 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.336 19.310 5.045 29.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.179 6.179 3 C 0.092 3.908 4 C -0.206 4.206 5 C -0.078 4.078 6 C -0.172 4.172 7 C -0.104 4.104 8 N -0.127 5.127 9 C -0.098 4.098 10 C 0.357 3.643 11 O -0.389 6.389 12 N -0.328 5.328 13 C -0.013 4.013 14 H 0.152 0.848 15 C -0.199 4.199 16 H 0.120 0.880 17 C 0.028 3.972 18 N -0.317 5.317 19 C -0.354 4.354 20 H 0.094 0.906 21 C -0.204 4.204 22 N -0.561 5.561 23 Si 0.743 3.257 24 H -0.214 1.214 25 H -0.207 1.207 26 H -0.216 1.216 27 C 0.059 3.941 28 C -0.201 4.201 29 H 0.121 0.879 30 H 0.125 0.875 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.163 0.837 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.182 0.818 38 H 0.242 0.758 39 H 0.045 0.955 40 H 0.070 0.930 41 H 0.064 0.936 42 H 0.109 0.891 43 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -20.556 18.094 4.891 27.818 hybrid contribution -0.093 0.522 -0.167 0.556 sum -20.649 18.616 4.724 28.200 Atomic orbital electron populations 1.23231 0.78516 1.04834 1.01094 1.86457 1.20921 1.24372 1.86169 1.20039 0.92243 0.85722 0.92773 1.21616 1.00918 0.91225 1.06875 1.20994 0.95259 0.95771 0.95745 1.20818 0.99916 0.93344 1.03110 1.22602 0.90576 0.96412 1.00824 1.67614 1.39767 0.97375 1.07937 1.20703 0.88621 0.92806 1.07683 1.17516 0.82098 0.87201 0.77455 1.90840 1.71572 1.27487 1.48990 1.45147 1.05193 1.09531 1.72974 1.22535 0.86069 0.88396 1.04336 0.84816 1.24311 0.96236 1.01161 0.98222 0.88039 1.21131 0.94154 0.90873 0.90996 1.45170 1.15987 1.70259 1.00288 1.18971 0.88335 1.27086 1.01028 0.90579 1.24905 0.98213 0.99328 0.97918 1.69901 1.32095 1.45287 1.08818 0.86134 0.84021 0.78574 0.76967 1.21410 1.20683 1.21582 1.20970 0.91052 0.87803 0.94304 1.25325 0.99022 1.02955 0.92765 0.87867 0.87485 0.92550 0.92505 0.83665 0.90212 0.90467 0.91017 0.81841 0.75772 0.95492 0.93010 0.93551 0.89058 0.95616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.83 101.05 0.99 1.13 16 2 O -0.27 -3.50 8.56 -40.60 -0.35 -3.85 16 3 C 0.14 1.76 6.71 -38.56 -0.26 1.50 16 4 C -0.18 -1.52 8.80 -39.15 -0.34 -1.87 16 5 C -0.08 -0.56 5.90 -104.40 -0.62 -1.17 16 6 C -0.11 -0.43 10.03 36.01 0.36 -0.07 16 7 C 0.06 0.51 10.85 -17.55 -0.19 0.32 16 8 N -0.42 -5.07 9.54 -9.71 -0.09 -5.16 16 9 C 0.04 0.58 6.76 -82.88 -0.56 0.02 16 10 C 0.57 9.79 7.80 -12.34 -0.10 9.70 16 11 O -0.51 -10.37 14.70 -16.63 -0.24 -10.62 16 12 N -0.68 -11.02 5.56 -52.59 -0.29 -11.32 16 13 C 0.09 1.71 6.20 -65.70 -0.41 1.31 16 14 H 0.13 2.73 7.40 -51.93 -0.38 2.34 16 15 C -0.18 -3.37 6.91 -89.21 -0.62 -3.98 16 16 H 0.10 1.72 8.14 -51.93 -0.42 1.29 16 17 C 0.16 3.40 7.04 -2.41 -0.02 3.39 16 18 N -0.59 -15.72 3.38 -169.11 -0.57 -16.29 16 19 C -0.23 -6.43 10.36 -15.06 -0.16 -6.59 16 20 H 0.08 2.08 7.84 -52.49 -0.41 1.67 16 21 C -0.01 -0.19 5.40 -17.43 -0.09 -0.28 16 22 N -0.91 -27.43 10.84 55.49 0.60 -26.82 16 23 Si 0.91 22.31 29.56 -169.99 -5.03 17.28 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 C 0.18 4.65 5.71 -2.62 -0.01 4.63 16 28 C -0.18 -3.64 7.21 -87.19 -0.63 -4.27 16 29 H 0.10 1.97 8.14 -51.93 -0.42 1.55 16 30 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.30 7.70 -51.93 -0.40 -0.10 16 32 H 0.06 0.31 7.70 -51.93 -0.40 -0.09 16 33 H 0.15 0.80 6.46 -52.49 -0.34 0.46 16 34 H 0.08 0.24 8.14 -51.93 -0.42 -0.19 16 35 H 0.08 0.21 8.09 -51.93 -0.42 -0.21 16 36 H 0.07 0.21 8.09 -51.93 -0.42 -0.21 16 37 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.41 5.82 8.15 -40.82 -0.33 5.49 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.09 2.54 6.50 -51.93 -0.34 2.20 16 43 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 360.27 15.07 5.43 5.43 Total: -1.00 -34.93 360.27 -9.15 -44.08 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -5.96 Total: 3.52 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: -2.65 Total: 3.74 kcal Atomic # 7 Polarization: -59.24 SS G_CDS: -0.36 Total: -59.59 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.59 Total: -14.46 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.03 Total: 17.28 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.93 -9.15 -44.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960316228.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.738 kcal (2) G-P(sol) polarization free energy of solvation -34.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds