Wall clock time and date at job start Tue Mar 31 2020 11:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35651 * 117.00181 * 2 1 4 4 C 1.39347 * 120.53804 * 0.02562 * 3 2 1 5 5 C 1.38300 * 118.43774 * 179.97438 * 4 3 2 6 6 C 1.50702 * 120.27406 * 179.97438 * 5 4 3 7 7 C 1.38762 * 119.44956 * 0.02562 * 5 4 3 8 8 N 1.31377 * 121.06537 * 359.72452 * 7 5 4 9 9 C 1.32863 * 121.69225 * 0.56476 * 8 7 5 10 10 C 1.47835 * 119.78135 * 179.71316 * 9 8 7 11 11 O 1.21552 * 119.99733 * 179.72881 * 10 9 8 12 12 N 1.34770 * 120.00044 * 359.72883 * 10 9 8 13 13 C 1.46500 * 120.00133 * 179.97438 * 12 10 9 14 14 H 1.08992 * 115.51475 * 350.42111 * 13 12 10 15 15 C 1.53001 * 117.44472 * 204.99927 * 13 12 10 16 16 H 1.09002 * 119.53743 * 5.75715 * 15 13 12 17 17 C 1.54390 * 118.12269 * 160.85944 * 15 13 12 18 18 N 1.48140 * 104.61976 * 89.20474 * 17 15 13 19 19 C 1.36936 * 127.83547 * 140.41411 * 18 17 15 20 20 H 1.08001 * 120.00581 * 344.76578 * 19 18 17 21 21 C 1.38818 * 120.00148 * 164.76416 * 19 18 17 22 22 N 1.31616 * 119.99609 * 351.33316 * 21 19 18 23 23 Si 1.86797 * 120.00268 * 171.32615 * 21 19 18 24 24 H 1.48501 * 109.47072 * 84.99972 * 23 21 19 25 25 H 1.48506 * 109.47120 * 325.00344 * 23 21 19 26 26 H 1.48494 * 109.47321 * 204.99822 * 23 21 19 27 27 C 1.48141 * 104.32691 * 320.67556 * 18 17 15 28 28 C 1.53991 * 104.81764 * 39.27498 * 27 18 17 29 29 H 1.08999 * 118.03000 * 115.98356 * 28 27 18 30 30 H 1.08995 * 109.47049 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47353 * 300.00188 * 1 2 3 32 32 H 1.09000 * 109.46971 * 60.00281 * 1 2 3 33 33 H 1.07999 * 120.78143 * 359.97438 * 4 3 2 34 34 H 1.08998 * 109.47420 * 89.99971 * 6 5 4 35 35 H 1.09006 * 109.47215 * 209.99821 * 6 5 4 36 36 H 1.08994 * 109.47498 * 329.99938 * 6 5 4 37 37 H 1.08002 * 119.46699 * 179.97438 * 7 5 4 38 38 H 0.97005 * 120.00279 * 0.02562 * 12 10 9 39 39 H 1.09001 * 110.40422 * 330.41760 * 17 15 13 40 40 H 1.08998 * 110.50649 * 208.04405 * 17 15 13 41 41 H 0.97005 * 119.99916 * 180.02562 * 22 21 19 42 42 H 1.09000 * 110.41049 * 158.10498 * 27 18 17 43 43 H 1.08998 * 110.40933 * 280.54404 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2969 2.3844 0.0005 5 6 1.9696 3.5928 0.0011 6 6 1.2019 4.8896 0.0011 7 6 3.3572 3.6012 0.0005 8 7 4.0419 2.4800 0.0049 9 6 3.4409 1.2951 -0.0011 10 6 4.2531 0.0598 -0.0022 11 8 3.7074 -1.0263 -0.0027 12 7 5.5986 0.1380 -0.0027 13 6 6.4034 -1.0861 -0.0033 14 1 5.8510 -2.0113 0.1604 15 6 7.8193 -0.9993 0.5701 16 1 8.1524 -0.0748 1.0417 17 6 8.5134 -2.3108 0.9965 18 7 9.2082 -2.7804 -0.2246 19 6 10.4485 -3.3532 -0.3177 20 1 11.1372 -3.2877 0.5116 21 6 10.8207 -4.0182 -1.4779 22 7 9.9301 -4.2474 -2.4195 23 14 12.5854 -4.5877 -1.7030 24 1 12.7644 -5.9123 -1.0560 25 1 13.5064 -3.6037 -1.0793 26 1 12.8884 -4.6998 -3.1524 27 6 8.2595 -2.4838 -1.3231 28 6 7.6501 -1.1173 -0.9590 29 1 7.8433 -0.2764 -1.6251 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 0.2174 2.3528 0.0005 34 1 1.0164 5.2021 1.0287 35 1 1.7829 5.6558 -0.5124 36 1 0.2512 4.7491 -0.5131 37 1 3.8827 4.5447 0.0005 38 1 6.0341 1.0048 -0.0019 39 1 7.7745 -3.0443 1.3193 40 1 9.2322 -2.1207 1.7935 41 1 10.1900 -4.7124 -3.2302 42 1 8.7872 -2.4220 -2.2748 43 1 7.4803 -3.2447 -1.3682 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960316228.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:43 Heat of formation + Delta-G solvation = 6.968119 kcal Electronic energy + Delta-G solvation = -25655.789280 eV Core-core repulsion = 21895.631377 eV Total energy + Delta-G solvation = -3760.157903 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.05459 -40.71636 -39.51237 -39.29579 -36.03742 -34.90604 -34.12940 -32.13858 -31.92523 -29.11969 -28.94542 -28.30534 -27.41292 -24.83861 -23.96211 -23.14233 -21.97040 -21.77392 -20.84580 -19.26440 -18.85495 -18.56521 -18.29034 -17.31295 -17.05308 -16.70500 -16.41692 -15.88917 -15.60905 -15.24755 -14.96007 -14.85116 -14.80001 -14.64239 -14.55394 -13.79658 -13.60338 -13.55816 -13.33738 -13.16110 -12.99411 -12.90427 -12.69772 -12.41723 -12.40077 -12.13828 -12.06324 -11.86825 -11.65891 -11.34571 -10.88093 -10.77397 -10.65427 -10.53495 -9.73848 -9.42208 -8.93137 -7.91080 -5.28771 -0.43775 0.19081 1.46811 1.49516 1.58590 1.61599 1.86994 2.17153 2.48825 2.64247 2.88147 3.09948 3.29661 3.50613 3.55531 3.67691 3.80734 3.89363 3.92051 4.04223 4.11952 4.22152 4.24474 4.33572 4.36603 4.51532 4.60209 4.72550 4.75457 4.85705 4.87400 4.91010 4.98005 5.15298 5.19293 5.27101 5.41685 5.44302 5.47008 5.52433 5.63494 6.15854 6.18461 6.39730 6.76802 6.99414 7.15807 7.66738 8.45664 9.22979 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.028310 B = 0.002420 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.827198 B =11566.715075 C =12077.460441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.309 6.309 3 C 0.132 3.868 4 C -0.176 4.176 5 C -0.056 4.056 6 C -0.114 4.114 7 C 0.054 3.946 8 N -0.432 5.432 9 C -0.004 4.004 10 C 0.569 3.431 11 O -0.558 6.558 12 N -0.670 5.670 13 C 0.112 3.888 14 H 0.111 0.889 15 C -0.154 4.154 16 H 0.135 0.865 17 C 0.149 3.851 18 N -0.616 5.616 19 C -0.241 4.241 20 H 0.085 0.915 21 C -0.066 4.066 22 N -0.950 5.950 23 Si 0.985 3.015 24 H -0.283 1.283 25 H -0.267 1.267 26 H -0.293 1.293 27 C 0.191 3.809 28 C -0.186 4.186 29 H 0.121 0.879 30 H 0.110 0.890 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.178 0.822 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.197 0.803 38 H 0.418 0.582 39 H 0.021 0.979 40 H 0.068 0.932 41 H 0.250 0.750 42 H 0.059 0.941 43 H -0.006 1.006 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.442 23.003 6.098 32.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.220 6.220 3 C 0.081 3.919 4 C -0.202 4.202 5 C -0.058 4.058 6 C -0.170 4.170 7 C -0.109 4.109 8 N -0.144 5.144 9 C -0.139 4.139 10 C 0.356 3.644 11 O -0.435 6.435 12 N -0.320 5.320 13 C 0.004 3.996 14 H 0.129 0.871 15 C -0.174 4.174 16 H 0.153 0.847 17 C 0.023 3.977 18 N -0.341 5.341 19 C -0.370 4.370 20 H 0.103 0.897 21 C -0.259 4.259 22 N -0.598 5.598 23 Si 0.812 3.188 24 H -0.209 1.209 25 H -0.192 1.192 26 H -0.220 1.220 27 C 0.065 3.935 28 C -0.207 4.207 29 H 0.138 0.862 30 H 0.128 0.872 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.195 0.805 34 H 0.114 0.886 35 H 0.111 0.889 36 H 0.104 0.896 37 H 0.213 0.787 38 H 0.256 0.744 39 H 0.039 0.961 40 H 0.087 0.913 41 H 0.059 0.941 42 H 0.078 0.922 43 H 0.012 0.988 Dipole moment (debyes) X Y Z Total from point charges -21.673 21.814 5.977 31.326 hybrid contribution 0.070 -0.521 -0.454 0.694 sum -21.603 21.294 5.523 30.832 Atomic orbital electron populations 1.23528 0.76068 1.05865 1.03046 1.86398 1.23697 1.25553 1.86342 1.20243 0.91959 0.86780 0.92921 1.21993 1.02365 0.90107 1.05745 1.21481 0.94984 0.97064 0.92319 1.20957 1.00234 0.91353 1.04484 1.23282 0.91725 0.96412 0.99509 1.67520 1.40627 0.97554 1.08650 1.20230 0.89171 0.92184 1.12357 1.18106 0.82124 0.88101 0.76065 1.90800 1.72301 1.29470 1.50976 1.44987 1.05065 1.08968 1.72963 1.22108 0.85815 0.88924 1.02716 0.87108 1.24217 0.95841 1.00826 0.96549 0.84705 1.21280 0.94380 0.91994 0.90038 1.45468 1.15933 1.70549 1.02101 1.19414 0.89368 1.26846 1.01340 0.89689 1.25829 1.02481 0.99902 0.97718 1.70118 1.34144 1.46326 1.09187 0.85013 0.79003 0.78248 0.76505 1.20939 1.19157 1.21950 1.20666 0.89998 0.89729 0.93131 1.25011 1.00971 1.00591 0.94144 0.86165 0.87155 0.90401 0.90549 0.80458 0.88615 0.88892 0.89552 0.78667 0.74387 0.96116 0.91335 0.94097 0.92237 0.98771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.83 113.37 1.11 1.24 16 2 O -0.31 -8.14 8.56 -68.67 -0.59 -8.73 16 3 C 0.13 3.17 6.71 22.93 0.15 3.32 16 4 C -0.18 -2.48 8.80 22.55 0.20 -2.28 16 5 C -0.06 -0.62 5.90 -19.72 -0.12 -0.73 16 6 C -0.11 -0.27 10.03 71.24 0.71 0.44 16 7 C 0.05 0.79 10.85 84.89 0.92 1.71 16 8 N -0.43 -9.98 9.54 -184.63 -1.76 -11.74 16 9 C 0.00 -0.10 6.76 41.93 0.28 0.18 16 10 C 0.57 20.16 7.80 86.78 0.68 20.84 16 11 O -0.56 -23.85 14.70 17.11 0.25 -23.60 16 12 N -0.67 -21.95 5.56 -438.59 -2.44 -24.39 16 13 C 0.11 4.22 6.20 46.44 0.29 4.51 16 14 H 0.11 4.79 7.40 -2.39 -0.02 4.77 16 15 C -0.15 -5.70 6.91 -9.88 -0.07 -5.76 16 16 H 0.14 4.17 8.14 -2.39 -0.02 4.15 16 17 C 0.15 6.55 7.04 86.54 0.61 7.16 16 18 N -0.62 -33.51 3.38 -688.95 -2.33 -35.84 16 19 C -0.24 -13.94 10.36 84.03 0.87 -13.07 16 20 H 0.09 4.63 7.84 -2.91 -0.02 4.61 16 21 C -0.07 -3.86 5.40 84.86 0.46 -3.40 16 22 N -0.95 -59.30 10.84 21.65 0.23 -59.06 16 23 Si 0.99 46.57 29.56 68.60 2.03 48.60 16 24 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 26 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 27 C 0.19 10.13 5.71 86.40 0.49 10.62 16 28 C -0.19 -7.70 7.21 -8.57 -0.06 -7.76 16 29 H 0.12 4.58 8.14 -2.39 -0.02 4.56 16 30 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.08 0.67 7.70 -2.39 -0.02 0.65 16 32 H 0.08 0.69 7.70 -2.39 -0.02 0.67 16 33 H 0.18 1.21 6.46 -2.91 -0.02 1.19 16 34 H 0.10 0.05 8.14 -2.39 -0.02 0.03 16 35 H 0.09 0.02 8.09 -2.38 -0.02 0.00 16 36 H 0.09 0.04 8.09 -2.39 -0.02 0.02 16 37 H 0.20 1.45 8.06 -2.91 -0.02 1.43 16 38 H 0.42 11.67 8.15 -92.70 -0.76 10.92 16 39 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 41 H 0.25 15.07 8.31 -92.70 -0.77 14.30 16 42 H 0.06 3.51 6.50 -2.39 -0.02 3.49 16 43 H -0.01 -0.33 8.14 -2.39 -0.02 -0.34 16 Total: -1.00 -81.27 360.27 2.22 -79.05 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.28 Total: 18.71 kcal Atomic # 6 Polarization: 10.47 SS G_CDS: 6.54 Total: 17.01 kcal Atomic # 7 Polarization: -124.74 SS G_CDS: -6.29 Total: -131.04 kcal Atomic # 8 Polarization: -31.99 SS G_CDS: -0.34 Total: -32.32 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -81.27 2.22 -79.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960316228.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.016 kcal (2) G-P(sol) polarization free energy of solvation -81.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds