Wall clock time and date at job start Tue Mar 31 2020 12:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35921 * 116.99676 * 2 1 4 4 C 1.38849 * 120.41167 * 0.02562 * 3 2 1 5 5 N 1.31874 * 121.00167 * 179.97438 * 4 3 2 6 6 C 1.31676 * 121.94346 * 359.73010 * 5 4 3 7 7 C 1.39525 * 120.69005 * 0.53527 * 6 5 4 8 8 C 1.47853 * 120.53332 * 179.75299 * 7 6 5 9 9 O 1.21554 * 120.00314 * 174.19665 * 8 7 6 10 10 N 1.34783 * 119.99916 * 354.19971 * 8 7 6 11 11 C 1.46500 * 120.00003 * 180.02562 * 10 8 7 12 12 H 1.08997 * 115.51557 * 9.57919 * 11 10 8 13 13 C 1.53005 * 117.40491 * 224.22542 * 11 10 8 14 14 H 1.09000 * 120.26088 * 3.81705 * 13 11 10 15 15 C 1.54388 * 118.12047 * 160.79182 * 13 11 10 16 16 N 1.48139 * 104.61439 * 87.19465 * 15 13 11 17 17 C 1.36937 * 127.84016 * 140.41318 * 16 15 13 18 18 H 1.08007 * 120.00079 * 343.55981 * 17 16 15 19 19 C 1.38816 * 120.00282 * 163.54945 * 17 16 15 20 20 N 1.31615 * 119.99836 * 161.45024 * 19 17 16 21 21 Si 1.86803 * 119.99986 * 341.46013 * 19 17 16 22 22 H 1.48499 * 109.47328 * 86.26291 * 21 19 17 23 23 H 1.48495 * 109.46764 * 206.26260 * 21 19 17 24 24 H 1.48499 * 109.47098 * 326.26113 * 21 19 17 25 25 C 1.48148 * 104.32739 * 320.41140 * 16 15 13 26 26 C 1.52998 * 117.44161 * 155.00359 * 11 10 8 27 27 H 1.09002 * 119.53729 * 354.23408 * 26 11 10 28 28 C 1.38845 * 120.40146 * 179.97438 * 3 2 1 29 29 C 1.50707 * 120.88152 * 0.04691 * 28 3 2 30 30 H 1.08994 * 109.47043 * 60.00012 * 1 2 3 31 31 H 1.09001 * 109.46751 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47089 * 299.99463 * 1 2 3 33 33 H 1.08007 * 119.49210 * 0.02562 * 4 3 2 34 34 H 1.07998 * 119.65680 * 180.26875 * 6 5 4 35 35 H 0.97003 * 119.99695 * 359.97438 * 10 8 7 36 36 H 1.08993 * 110.40648 * 328.40804 * 15 13 11 37 37 H 1.09000 * 110.40748 * 205.97444 * 15 13 11 38 38 H 0.97002 * 120.00226 * 180.02562 * 20 19 17 39 39 H 1.08997 * 110.41148 * 158.37409 * 25 16 15 40 40 H 1.09002 * 110.40721 * 280.68692 * 25 16 15 41 41 H 1.08997 * 109.46689 * 262.96915 * 29 28 3 42 42 H 1.08996 * 109.46774 * 22.96945 * 29 28 3 43 43 H 1.09003 * 109.46657 * 142.96901 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2981 2.3809 0.0005 5 7 1.8846 3.5621 0.0010 6 6 3.1952 3.6891 0.0063 7 6 4.0198 2.5636 0.0004 8 6 5.4911 2.7104 0.0009 9 8 6.1998 1.7281 0.1022 10 7 6.0464 3.9334 -0.1109 11 6 7.5042 4.0787 -0.1110 12 1 8.0687 3.1490 -0.1811 13 6 8.0999 5.2030 0.7388 14 1 7.4543 5.8205 1.3633 15 6 9.5927 5.1127 1.1221 16 7 10.3083 5.7450 -0.0104 17 6 11.3983 6.5723 0.0414 18 1 11.6739 7.0447 0.9728 19 6 12.1492 6.8036 -1.1030 20 7 12.9497 7.8465 -1.1651 21 14 12.0233 5.6349 -2.5548 22 1 10.8884 6.0425 -3.4214 23 1 13.2846 5.6799 -3.3371 24 1 11.7968 4.2533 -2.0598 25 6 9.5772 5.2794 -1.2119 26 6 8.0896 5.3129 -0.8000 27 1 7.4296 5.9881 -1.3447 28 6 3.4321 1.2936 0.0005 29 6 4.2810 0.0484 0.0001 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 0.2196 2.3225 0.0014 34 1 3.6366 4.6748 0.0110 35 1 5.4808 4.7172 -0.1921 36 1 9.8952 4.0710 1.2288 37 1 9.7820 5.6609 2.0449 38 1 13.4742 8.0084 -1.9649 39 1 9.7549 5.9534 -2.0499 40 1 9.8790 4.2645 -1.4709 41 1 4.5892 -0.1815 1.0200 42 1 3.7040 -0.7845 -0.4017 43 1 5.1638 0.2108 -0.6185 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960548479.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:16 Heat of formation + Delta-G solvation = 40.034340 kcal Electronic energy + Delta-G solvation = -25745.953735 eV Core-core repulsion = 21987.229691 eV Total energy + Delta-G solvation = -3758.724044 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.41619 -39.98626 -38.86320 -38.14563 -34.95471 -33.94564 -32.94406 -31.36458 -30.43291 -28.19748 -28.06336 -27.85005 -25.86004 -24.36378 -22.85784 -21.79177 -20.91669 -20.66259 -19.68655 -18.63538 -17.86902 -17.07701 -16.76184 -16.67670 -16.46534 -16.26675 -15.26019 -15.14524 -14.63610 -14.52327 -13.94959 -13.72106 -13.59594 -13.35781 -13.08225 -13.04609 -12.94613 -12.57919 -12.53729 -12.28676 -12.14937 -11.96787 -11.72878 -11.24317 -11.07930 -10.77230 -10.39077 -10.20343 -10.11724 -9.87992 -9.66076 -9.57943 -9.34431 -8.90915 -8.85184 -8.64058 -7.17322 -5.95173 -3.27538 0.20312 0.79088 2.48971 2.55081 2.94803 3.30782 3.38941 3.47324 3.48644 3.88431 4.03840 4.06179 4.29047 4.34116 4.51313 4.52236 4.61147 4.72547 4.78543 4.81721 4.98511 5.06230 5.06873 5.20442 5.29793 5.36251 5.49936 5.56546 5.68701 5.70405 5.79349 5.83270 5.91712 6.19705 6.22384 6.44912 6.50500 6.51968 6.61378 6.66337 6.75084 7.29350 7.39662 7.53949 7.98707 8.28956 8.75101 9.63578 10.16299 11.20800 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.032718 B = 0.002470 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.603015 B =11334.873921 C =11570.606607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.305 6.305 3 C 0.066 3.934 4 C 0.040 3.960 5 N -0.456 5.456 6 C 0.102 3.898 7 C -0.153 4.153 8 C 0.567 3.433 9 O -0.521 6.521 10 N -0.690 5.690 11 C 0.100 3.900 12 H 0.136 0.864 13 C -0.175 4.175 14 H 0.111 0.889 15 C 0.158 3.842 16 N -0.604 5.604 17 C -0.236 4.236 18 H 0.097 0.903 19 C 0.017 3.983 20 N -0.912 5.912 21 Si 0.886 3.114 22 H -0.287 1.287 23 H -0.302 1.302 24 H -0.270 1.270 25 C 0.129 3.871 26 C -0.175 4.175 27 H 0.112 0.888 28 C -0.010 4.010 29 C -0.115 4.115 30 H 0.059 0.941 31 H 0.105 0.895 32 H 0.059 0.941 33 H 0.163 0.837 34 H 0.162 0.838 35 H 0.400 0.600 36 H 0.034 0.966 37 H 0.063 0.937 38 H 0.264 0.736 39 H 0.073 0.927 40 H 0.037 0.963 41 H 0.082 0.918 42 H 0.068 0.932 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.290 -13.801 2.140 30.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.217 6.217 3 C 0.018 3.982 4 C -0.117 4.117 5 N -0.165 5.165 6 C -0.057 4.057 7 C -0.158 4.158 8 C 0.353 3.647 9 O -0.398 6.398 10 N -0.339 5.339 11 C -0.006 4.006 12 H 0.154 0.846 13 C -0.196 4.196 14 H 0.129 0.871 15 C 0.032 3.968 16 N -0.328 5.328 17 C -0.362 4.362 18 H 0.114 0.886 19 C -0.181 4.181 20 N -0.556 5.556 21 Si 0.717 3.283 22 H -0.214 1.214 23 H -0.230 1.230 24 H -0.196 1.196 25 C 0.003 3.997 26 C -0.196 4.196 27 H 0.130 0.870 28 C -0.019 4.019 29 C -0.171 4.171 30 H 0.077 0.923 31 H 0.123 0.877 32 H 0.077 0.923 33 H 0.180 0.820 34 H 0.179 0.821 35 H 0.235 0.765 36 H 0.052 0.948 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.055 0.945 41 H 0.100 0.900 42 H 0.086 0.914 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -26.941 -13.797 2.137 30.343 hybrid contribution -0.266 -0.529 -0.940 1.111 sum -27.206 -14.326 1.197 30.771 Atomic orbital electron populations 1.23166 0.77810 1.04640 1.01627 1.86108 1.21641 1.25424 1.88533 1.19765 0.92316 0.86123 0.99978 1.23092 1.00768 0.87053 1.00767 1.67531 1.11824 1.25988 1.11182 1.22850 0.88777 0.98083 0.96007 1.20711 0.94620 0.93879 1.06569 1.17850 0.86622 0.83405 0.76798 1.90762 1.62974 1.37214 1.48846 1.45261 1.07017 1.08238 1.73396 1.21870 0.79271 0.95769 1.03641 0.84629 1.24410 0.99351 1.01584 0.94257 0.87098 1.21132 0.86999 0.96452 0.92263 1.45557 1.32232 1.55040 1.00012 1.18667 1.01126 1.18081 0.98351 0.88588 1.24957 0.97490 0.97979 0.97645 1.69788 1.30287 1.26484 1.29062 0.86941 0.75677 0.82746 0.82948 1.21438 1.23022 1.19569 1.21672 0.87302 0.98387 0.92314 1.24298 0.99152 0.99718 0.96457 0.87026 1.19866 0.90829 0.95952 0.95241 1.20939 0.99506 0.92438 1.04180 0.92285 0.87658 0.92280 0.82030 0.82084 0.76462 0.94776 0.91873 0.92641 0.90900 0.94494 0.89999 0.91358 0.88258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.82 101.05 0.99 1.08 16 2 O -0.31 -2.48 9.56 -19.49 -0.19 -2.67 16 3 C 0.07 0.62 6.68 -39.13 -0.26 0.36 16 4 C 0.04 0.35 10.21 -17.31 -0.18 0.17 16 5 N -0.46 -4.61 10.34 -12.80 -0.13 -4.74 16 6 C 0.10 0.98 10.69 -17.14 -0.18 0.80 16 7 C -0.15 -1.68 5.89 -104.84 -0.62 -2.30 16 8 C 0.57 7.29 7.73 -12.32 -0.10 7.19 16 9 O -0.52 -8.17 13.07 5.32 0.07 -8.10 16 10 N -0.69 -8.13 5.52 -54.74 -0.30 -8.43 16 11 C 0.10 1.48 5.98 -67.93 -0.41 1.07 16 12 H 0.14 2.23 7.40 -51.93 -0.38 1.85 16 13 C -0.17 -2.77 7.06 -89.22 -0.63 -3.40 16 14 H 0.11 1.55 8.14 -51.93 -0.42 1.13 16 15 C 0.16 3.06 7.04 -2.41 -0.02 3.04 16 16 N -0.60 -14.45 3.22 -168.86 -0.54 -15.00 16 17 C -0.24 -6.63 10.77 -15.06 -0.16 -6.79 16 18 H 0.10 2.85 8.06 -52.48 -0.42 2.42 16 19 C 0.02 0.51 5.48 -17.43 -0.10 0.41 16 20 N -0.91 -28.06 13.97 55.49 0.78 -27.29 16 21 Si 0.89 22.51 24.50 -169.99 -4.16 18.34 16 22 H -0.29 -6.99 6.35 56.52 0.36 -6.63 16 23 H -0.30 -7.80 7.11 56.52 0.40 -7.40 16 24 H -0.27 -6.74 6.35 56.52 0.36 -6.38 16 25 C 0.13 2.76 4.51 -2.41 -0.01 2.75 16 26 C -0.17 -2.90 7.05 -89.22 -0.63 -3.53 16 27 H 0.11 1.65 8.14 -51.93 -0.42 1.22 16 28 C -0.01 -0.11 5.97 -103.75 -0.62 -0.73 16 29 C -0.11 -1.23 8.68 36.01 0.31 -0.92 16 30 H 0.06 0.17 7.68 -51.93 -0.40 -0.23 16 31 H 0.11 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.17 7.67 -51.93 -0.40 -0.23 16 33 H 0.16 0.89 6.30 -52.48 -0.33 0.56 16 34 H 0.16 1.13 6.46 -52.49 -0.34 0.79 16 35 H 0.40 3.57 6.92 -40.82 -0.28 3.29 16 36 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 38 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 39 H 0.07 1.68 4.89 -51.93 -0.25 1.43 16 40 H 0.04 0.80 6.88 -51.93 -0.36 0.45 16 41 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.07 0.65 7.42 -51.93 -0.39 0.26 16 43 H 0.10 1.23 5.99 -51.93 -0.31 0.91 16 LS Contribution 346.35 15.07 5.22 5.22 Total: -1.00 -33.90 346.35 -7.48 -41.38 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -5.62 Total: 2.08 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -2.60 Total: -0.80 kcal Atomic # 7 Polarization: -55.25 SS G_CDS: -0.20 Total: -55.45 kcal Atomic # 8 Polarization: -10.65 SS G_CDS: -0.12 Total: -10.77 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.16 Total: 18.34 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.90 -7.48 -41.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960548479.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.415 kcal (2) G-P(sol) polarization free energy of solvation -33.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds