Wall clock time and date at job start Tue Mar 31 2020 12:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35921 * 116.99676 * 2 1 4 4 C 1.38849 * 120.41167 * 0.02562 * 3 2 1 5 5 N 1.31874 * 121.00167 * 179.97438 * 4 3 2 6 6 C 1.31676 * 121.94346 * 359.73010 * 5 4 3 7 7 C 1.39525 * 120.69005 * 0.53527 * 6 5 4 8 8 C 1.47853 * 120.53332 * 179.75299 * 7 6 5 9 9 O 1.21554 * 120.00314 * 174.19665 * 8 7 6 10 10 N 1.34783 * 119.99916 * 354.19971 * 8 7 6 11 11 C 1.46500 * 120.00003 * 180.02562 * 10 8 7 12 12 H 1.08997 * 115.51557 * 9.57919 * 11 10 8 13 13 C 1.53005 * 117.40491 * 224.22542 * 11 10 8 14 14 H 1.09000 * 120.26088 * 3.81705 * 13 11 10 15 15 C 1.54388 * 118.12047 * 160.79182 * 13 11 10 16 16 N 1.48139 * 104.61439 * 87.19465 * 15 13 11 17 17 C 1.36937 * 127.84016 * 140.41318 * 16 15 13 18 18 H 1.08007 * 120.00079 * 343.55981 * 17 16 15 19 19 C 1.38816 * 120.00282 * 163.54945 * 17 16 15 20 20 N 1.31615 * 119.99836 * 161.45024 * 19 17 16 21 21 Si 1.86803 * 119.99986 * 341.46013 * 19 17 16 22 22 H 1.48499 * 109.47328 * 86.26291 * 21 19 17 23 23 H 1.48495 * 109.46764 * 206.26260 * 21 19 17 24 24 H 1.48499 * 109.47098 * 326.26113 * 21 19 17 25 25 C 1.48148 * 104.32739 * 320.41140 * 16 15 13 26 26 C 1.52998 * 117.44161 * 155.00359 * 11 10 8 27 27 H 1.09002 * 119.53729 * 354.23408 * 26 11 10 28 28 C 1.38845 * 120.40146 * 179.97438 * 3 2 1 29 29 C 1.50707 * 120.88152 * 0.04691 * 28 3 2 30 30 H 1.08994 * 109.47043 * 60.00012 * 1 2 3 31 31 H 1.09001 * 109.46751 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47089 * 299.99463 * 1 2 3 33 33 H 1.08007 * 119.49210 * 0.02562 * 4 3 2 34 34 H 1.07998 * 119.65680 * 180.26875 * 6 5 4 35 35 H 0.97003 * 119.99695 * 359.97438 * 10 8 7 36 36 H 1.08993 * 110.40648 * 328.40804 * 15 13 11 37 37 H 1.09000 * 110.40748 * 205.97444 * 15 13 11 38 38 H 0.97002 * 120.00226 * 180.02562 * 20 19 17 39 39 H 1.08997 * 110.41148 * 158.37409 * 25 16 15 40 40 H 1.09002 * 110.40721 * 280.68692 * 25 16 15 41 41 H 1.08997 * 109.46689 * 262.96915 * 29 28 3 42 42 H 1.08996 * 109.46774 * 22.96945 * 29 28 3 43 43 H 1.09003 * 109.46657 * 142.96901 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2981 2.3809 0.0005 5 7 1.8846 3.5621 0.0010 6 6 3.1952 3.6891 0.0063 7 6 4.0198 2.5636 0.0004 8 6 5.4911 2.7104 0.0009 9 8 6.1998 1.7281 0.1022 10 7 6.0464 3.9334 -0.1109 11 6 7.5042 4.0787 -0.1110 12 1 8.0687 3.1490 -0.1811 13 6 8.0999 5.2030 0.7388 14 1 7.4543 5.8205 1.3633 15 6 9.5927 5.1127 1.1221 16 7 10.3083 5.7450 -0.0104 17 6 11.3983 6.5723 0.0414 18 1 11.6739 7.0447 0.9728 19 6 12.1492 6.8036 -1.1030 20 7 12.9497 7.8465 -1.1651 21 14 12.0233 5.6349 -2.5548 22 1 10.8884 6.0425 -3.4214 23 1 13.2846 5.6799 -3.3371 24 1 11.7968 4.2533 -2.0598 25 6 9.5772 5.2794 -1.2119 26 6 8.0896 5.3129 -0.8000 27 1 7.4296 5.9881 -1.3447 28 6 3.4321 1.2936 0.0005 29 6 4.2810 0.0484 0.0001 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 0.2196 2.3225 0.0014 34 1 3.6366 4.6748 0.0110 35 1 5.4808 4.7172 -0.1921 36 1 9.8952 4.0710 1.2288 37 1 9.7820 5.6609 2.0449 38 1 13.4742 8.0084 -1.9649 39 1 9.7549 5.9534 -2.0499 40 1 9.8790 4.2645 -1.4709 41 1 4.5892 -0.1815 1.0200 42 1 3.7040 -0.7845 -0.4017 43 1 5.1638 0.2108 -0.6185 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000960548479.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:15 Heat of formation + Delta-G solvation = 15.351137 kcal Electronic energy + Delta-G solvation = -25747.024079 eV Core-core repulsion = 21987.229691 eV Total energy + Delta-G solvation = -3759.794388 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.16814 -41.07293 -40.00310 -38.90758 -36.33530 -34.78535 -34.54632 -32.93012 -31.47638 -29.44143 -28.97141 -28.49604 -27.60515 -25.27655 -23.75740 -23.17052 -22.11963 -21.86453 -21.13399 -19.42266 -18.93841 -18.59577 -17.84072 -17.42294 -17.38781 -17.02159 -16.86028 -16.12504 -15.74711 -15.50681 -15.24188 -15.14199 -14.69010 -14.66798 -14.28592 -14.00776 -13.88441 -13.79186 -13.77813 -13.37436 -13.21779 -13.07480 -12.74291 -12.66148 -12.41752 -12.36449 -12.09809 -11.76774 -11.51286 -11.26964 -10.96890 -10.81252 -10.68151 -10.47885 -9.80407 -9.54281 -9.17711 -8.17269 -5.45718 -0.55392 0.07728 1.27328 1.39375 1.46743 1.61723 1.68359 2.23034 2.39316 2.59111 2.80155 3.03378 3.23030 3.26852 3.40123 3.54636 3.60163 3.68948 3.79251 3.95745 3.98115 4.07824 4.26533 4.34177 4.35724 4.40566 4.53136 4.61162 4.66252 4.69967 4.74074 4.77734 4.78013 4.95400 5.03351 5.11749 5.16723 5.23782 5.37568 5.45124 5.56379 6.09370 6.12980 6.36655 6.66253 6.70423 7.03853 7.47834 8.11140 9.02422 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.032718 B = 0.002470 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.603015 B =11334.873921 C =11570.606607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.320 6.320 3 C 0.067 3.933 4 C 0.047 3.953 5 N -0.470 5.470 6 C 0.105 3.895 7 C -0.162 4.162 8 C 0.569 3.431 9 O -0.554 6.554 10 N -0.676 5.676 11 C 0.124 3.876 12 H 0.120 0.880 13 C -0.163 4.163 14 H 0.139 0.861 15 C 0.150 3.850 16 N -0.626 5.626 17 C -0.224 4.224 18 H 0.067 0.933 19 C -0.042 4.042 20 N -0.960 5.960 21 Si 0.947 3.053 22 H -0.269 1.269 23 H -0.310 1.310 24 H -0.265 1.265 25 C 0.122 3.878 26 C -0.173 4.173 27 H 0.138 0.862 28 C -0.031 4.031 29 C -0.107 4.107 30 H 0.072 0.928 31 H 0.122 0.878 32 H 0.072 0.928 33 H 0.193 0.807 34 H 0.186 0.814 35 H 0.417 0.583 36 H 0.037 0.963 37 H 0.064 0.936 38 H 0.262 0.738 39 H 0.056 0.944 40 H 0.035 0.965 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.157 -14.669 1.866 34.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.232 6.232 3 C 0.019 3.981 4 C -0.110 4.110 5 N -0.179 5.179 6 C -0.053 4.053 7 C -0.168 4.168 8 C 0.357 3.643 9 O -0.433 6.433 10 N -0.326 5.326 11 C 0.017 3.983 12 H 0.137 0.863 13 C -0.184 4.184 14 H 0.157 0.843 15 C 0.025 3.975 16 N -0.351 5.351 17 C -0.352 4.352 18 H 0.084 0.916 19 C -0.236 4.236 20 N -0.607 5.607 21 Si 0.776 3.224 22 H -0.196 1.196 23 H -0.238 1.238 24 H -0.190 1.190 25 C -0.003 4.003 26 C -0.194 4.194 27 H 0.156 0.844 28 C -0.040 4.040 29 C -0.163 4.163 30 H 0.090 0.910 31 H 0.140 0.860 32 H 0.090 0.910 33 H 0.210 0.790 34 H 0.203 0.797 35 H 0.256 0.744 36 H 0.055 0.945 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.052 0.948 41 H 0.094 0.906 42 H 0.095 0.905 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -30.888 -14.682 1.873 34.251 hybrid contribution 0.801 -0.350 -0.744 1.148 sum -30.087 -15.032 1.128 33.652 Atomic orbital electron populations 1.23510 0.75545 1.06331 1.02893 1.86101 1.23980 1.24900 1.88255 1.19770 0.91814 0.87007 0.99523 1.23584 1.02168 0.86299 0.98933 1.67627 1.11920 1.26613 1.11736 1.23182 0.88642 0.98564 0.94961 1.20549 0.93349 0.94594 1.08283 1.18138 0.87359 0.82988 0.75852 1.90760 1.63893 1.38350 1.50328 1.45031 1.05732 1.08857 1.73020 1.21452 0.80798 0.94321 1.01728 0.86252 1.24296 0.97448 1.02675 0.94021 0.84310 1.21300 0.88980 0.96113 0.91108 1.45668 1.31839 1.55055 1.02572 1.18606 1.02121 1.17448 0.97070 0.91558 1.25598 0.97986 0.99405 1.00635 1.69914 1.32237 1.28437 1.30095 0.85946 0.75676 0.80749 0.79995 1.19598 1.23830 1.19015 1.21679 0.90284 0.97407 0.90967 1.24121 0.96714 1.01699 0.96897 0.84406 1.20013 0.91890 0.95873 0.96206 1.20804 0.98952 0.93149 1.03432 0.90962 0.85959 0.90954 0.79004 0.79683 0.74394 0.94493 0.91785 0.92859 0.92584 0.94775 0.90622 0.90490 0.90145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.05 9.82 113.37 1.11 1.16 16 2 O -0.32 -4.49 9.56 -92.66 -0.89 -5.37 16 3 C 0.07 1.11 6.68 22.56 0.15 1.26 16 4 C 0.05 0.66 10.21 84.83 0.87 1.53 16 5 N -0.47 -8.00 10.34 -194.40 -2.01 -10.01 16 6 C 0.11 1.71 10.69 85.03 0.91 2.62 16 7 C -0.16 -3.27 5.89 -20.01 -0.12 -3.39 16 8 C 0.57 13.64 7.73 86.79 0.67 14.31 16 9 O -0.55 -17.07 13.07 -3.89 -0.05 -17.12 16 10 N -0.68 -13.93 5.52 -445.39 -2.46 -16.39 16 11 C 0.12 3.34 5.98 44.99 0.27 3.60 16 12 H 0.12 3.75 7.40 -2.39 -0.02 3.73 16 13 C -0.16 -4.73 7.06 -9.89 -0.07 -4.80 16 14 H 0.14 3.31 8.14 -2.39 -0.02 3.29 16 15 C 0.15 5.66 7.04 86.54 0.61 6.27 16 16 N -0.63 -29.82 3.22 -688.16 -2.21 -32.03 16 17 C -0.22 -12.90 10.77 84.03 0.90 -11.99 16 18 H 0.07 4.10 8.06 -2.91 -0.02 4.08 16 19 C -0.04 -2.51 5.48 84.86 0.47 -2.04 16 20 N -0.96 -60.85 13.97 21.65 0.30 -60.55 16 21 Si 0.95 47.26 24.50 68.60 1.68 48.94 16 22 H -0.27 -12.55 6.35 99.48 0.63 -11.92 16 23 H -0.31 -15.67 7.11 99.48 0.71 -14.97 16 24 H -0.27 -12.81 6.35 99.48 0.63 -12.18 16 25 C 0.12 5.05 4.51 86.53 0.39 5.44 16 26 C -0.17 -5.28 7.05 -9.89 -0.07 -5.35 16 27 H 0.14 3.52 8.14 -2.39 -0.02 3.50 16 28 C -0.03 -0.64 5.97 -19.30 -0.12 -0.75 16 29 C -0.11 -2.28 8.68 71.24 0.62 -1.67 16 30 H 0.07 0.16 7.68 -2.39 -0.02 0.14 16 31 H 0.12 0.15 8.14 -2.39 -0.02 0.13 16 32 H 0.07 0.16 7.67 -2.39 -0.02 0.14 16 33 H 0.19 1.35 6.30 -2.91 -0.02 1.33 16 34 H 0.19 1.88 6.46 -2.91 -0.02 1.86 16 35 H 0.42 5.77 6.92 -92.71 -0.64 5.13 16 36 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 38 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 39 H 0.06 2.51 4.89 -2.39 -0.01 2.50 16 40 H 0.03 1.44 6.88 -2.39 -0.02 1.43 16 41 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.08 1.43 7.42 -2.39 -0.02 1.41 16 43 H 0.08 2.02 5.99 -2.39 -0.01 2.00 16 Total: -1.00 -75.55 346.35 1.23 -74.32 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 0.27 Total: 12.00 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: 6.59 Total: 6.21 kcal Atomic # 7 Polarization: -112.60 SS G_CDS: -6.38 Total: -118.98 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.94 Total: -22.49 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 1.68 Total: 48.94 kcal Total: -75.55 1.23 -74.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960548479.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.676 kcal (2) G-P(sol) polarization free energy of solvation -75.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds