Wall clock time and date at job start Tue Mar 31 2020 11:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35691 * 116.99757 * 2 1 4 4 C 1.38892 * 119.61778 * 180.02562 * 3 2 1 5 5 C 1.39579 * 118.94201 * 180.02562 * 4 3 2 6 6 C 1.48171 * 120.88925 * 180.02562 * 5 4 3 7 7 O 1.21513 * 119.99735 * 179.97438 * 6 5 4 8 8 N 1.34778 * 119.99863 * 359.97316 * 6 5 4 9 9 C 1.46500 * 119.99722 * 180.02562 * 8 6 5 10 10 H 1.08999 * 115.51758 * 9.41667 * 9 8 6 11 11 C 1.52995 * 117.44020 * 223.99783 * 9 8 6 12 12 H 1.09002 * 119.54216 * 4.12152 * 11 9 8 13 13 C 1.54392 * 118.12169 * 160.80618 * 11 9 8 14 14 N 1.48154 * 104.61397 * 87.19661 * 13 11 9 15 15 C 1.36935 * 127.84006 * 140.41708 * 14 13 11 16 16 H 1.07999 * 120.00002 * 344.89345 * 15 14 13 17 17 C 1.38805 * 120.00053 * 164.89355 * 15 14 13 18 18 N 1.31620 * 120.00278 * 350.66242 * 17 15 14 19 19 Si 1.86801 * 120.00067 * 170.65881 * 17 15 14 20 20 H 1.48499 * 109.46923 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.47032 * 120.00179 * 19 17 15 22 22 H 1.48498 * 109.47591 * 240.00156 * 19 17 15 23 23 C 1.51697 * 104.54614 * 320.18612 * 14 13 11 24 24 C 1.52996 * 117.44230 * 154.83129 * 9 8 6 25 25 H 1.09003 * 119.54098 * 355.88089 * 24 9 8 26 26 C 1.39963 * 118.22061 * 359.97438 * 5 4 3 27 27 C 1.37980 * 119.13006 * 0.28498 * 26 5 4 28 28 C 1.50704 * 119.51212 * 179.70171 * 27 26 5 29 29 N 1.31914 * 120.97827 * 359.41849 * 27 26 5 30 30 H 1.08999 * 109.47198 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46985 * 300.00644 * 1 2 3 32 32 H 1.08998 * 109.47300 * 60.00353 * 1 2 3 33 33 H 1.07994 * 120.53048 * 0.03889 * 4 3 2 34 34 H 0.96996 * 119.99970 * 359.97438 * 8 6 5 35 35 H 1.08999 * 110.40700 * 205.97270 * 13 11 9 36 36 H 1.08999 * 110.41134 * 328.41142 * 13 11 9 37 37 H 0.97003 * 120.00456 * 179.97438 * 18 17 15 38 38 H 1.08997 * 111.96381 * 281.13355 * 23 14 13 39 39 H 1.09003 * 110.49066 * 157.55513 * 23 14 13 40 40 H 1.07998 * 120.43254 * 180.02562 * 26 5 4 41 41 H 1.08991 * 109.47525 * 89.99166 * 28 27 26 42 42 H 1.09002 * 109.47040 * 210.00224 * 28 27 26 43 43 H 1.09009 * 109.46281 * 329.99334 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2090 0.0000 4 6 3.4325 1.2725 -0.0005 5 6 4.0514 2.5236 0.0000 6 6 5.5284 2.6416 -0.0011 7 8 6.0502 3.7390 -0.0011 8 7 6.2930 1.5317 -0.0021 9 6 7.7534 1.6484 -0.0026 10 1 8.1442 2.6531 0.1588 11 6 8.5336 0.7315 -0.9467 12 1 7.9920 0.0774 -1.6301 13 6 9.9837 1.1212 -1.3061 14 7 10.8087 0.5244 -0.2300 15 6 12.0283 -0.0872 -0.3476 16 1 12.3863 -0.3955 -1.3188 17 6 12.8043 -0.3109 0.7813 18 7 12.4592 0.2233 1.9336 19 14 14.3384 -1.3703 0.6652 20 1 14.5053 -1.8484 -0.7308 21 1 15.5248 -0.5683 1.0584 22 1 14.2052 -2.5360 1.5755 23 6 10.0029 0.7471 1.0359 24 6 8.5544 0.4793 0.5737 25 1 8.0282 -0.3629 1.0233 26 6 3.2394 3.6637 0.0005 27 6 1.8681 3.5116 0.0065 28 6 0.9857 4.7333 0.0139 29 7 1.3178 2.3127 0.0002 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 4.0230 0.3684 -0.0016 34 1 5.8765 0.6558 -0.0018 35 1 10.2609 0.7029 -2.2737 36 1 10.0952 2.2054 -1.3136 37 1 13.0013 0.0667 2.7226 38 1 10.1009 1.7671 1.4073 39 1 10.2949 0.0319 1.8048 40 1 3.6806 4.6494 0.0006 41 1 0.7683 5.0308 -1.0118 42 1 0.0539 4.5053 0.5315 43 1 1.4969 5.5475 0.5278 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961607437.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:15 Heat of formation + Delta-G solvation = 30.750418 kcal Electronic energy + Delta-G solvation = -25362.224715 eV Core-core repulsion = 21603.098090 eV Total energy + Delta-G solvation = -3759.126625 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.21606 -39.80191 -38.53013 -37.93910 -34.59838 -33.60696 -32.44202 -32.08556 -30.17037 -28.71232 -27.17507 -26.98107 -25.88137 -24.46020 -23.06326 -21.78160 -20.64034 -20.23776 -19.25225 -18.64134 -17.42695 -16.95016 -16.81498 -16.43033 -16.05717 -15.92758 -15.00305 -14.81053 -14.62653 -14.43461 -14.31375 -13.77969 -13.51693 -13.24761 -12.84603 -12.77848 -12.74012 -12.49702 -12.22348 -12.04963 -11.62676 -11.50143 -11.37750 -11.02781 -10.85400 -10.49302 -10.41440 -10.26013 -10.19327 -10.12962 -9.93815 -9.69506 -9.25306 -8.80986 -8.77357 -8.42534 -6.89210 -5.80051 -3.13154 0.37137 0.77788 2.62792 2.66218 2.91618 3.37963 3.43972 3.46383 3.46999 3.74248 4.25942 4.32752 4.46229 4.52381 4.64856 4.75779 4.90911 4.95858 5.02181 5.10690 5.13659 5.21460 5.27407 5.31056 5.34315 5.50681 5.54322 5.58903 5.72757 5.75811 5.86294 5.98108 6.05554 6.16194 6.49340 6.66990 6.69966 6.82716 6.86473 7.27863 7.39564 7.44165 7.49985 7.68929 8.05344 8.13406 9.05489 9.72054 10.48290 11.35079 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.026441 B = 0.002319 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.710496 B =12073.210770 C =12690.344669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.306 6.306 3 C 0.324 3.676 4 C -0.167 4.167 5 C -0.043 4.043 6 C 0.561 3.439 7 O -0.523 6.523 8 N -0.686 5.686 9 C 0.092 3.908 10 H 0.135 0.865 11 C -0.180 4.180 12 H 0.104 0.896 13 C 0.158 3.842 14 N -0.598 5.598 15 C -0.224 4.224 16 H 0.078 0.922 17 C -0.007 4.007 18 N -0.916 5.916 19 Si 0.912 3.088 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.290 1.290 23 C 0.185 3.815 24 C -0.176 4.176 25 H 0.103 0.897 26 C -0.153 4.153 27 C 0.165 3.835 28 C -0.104 4.104 29 N -0.528 5.528 30 H 0.097 0.903 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.146 0.854 34 H 0.400 0.600 35 H 0.053 0.947 36 H 0.027 0.973 37 H 0.254 0.746 38 H 0.033 0.967 39 H 0.092 0.908 40 H 0.152 0.848 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.960 3.312 -3.460 26.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.212 6.212 3 C 0.144 3.856 4 C -0.188 4.188 5 C -0.054 4.054 6 C 0.346 3.654 7 O -0.399 6.399 8 N -0.335 5.335 9 C -0.014 4.014 10 H 0.152 0.848 11 C -0.202 4.202 12 H 0.122 0.878 13 C 0.031 3.969 14 N -0.323 5.323 15 C -0.352 4.352 16 H 0.095 0.905 17 C -0.204 4.204 18 N -0.563 5.563 19 Si 0.743 3.257 20 H -0.204 1.204 21 H -0.217 1.217 22 H -0.217 1.217 23 C 0.060 3.940 24 C -0.197 4.197 25 H 0.121 0.879 26 C -0.174 4.174 27 C 0.028 3.972 28 C -0.162 4.162 29 N -0.254 5.254 30 H 0.115 0.885 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.164 0.836 34 H 0.235 0.765 35 H 0.071 0.929 36 H 0.045 0.955 37 H 0.064 0.936 38 H 0.051 0.949 39 H 0.111 0.889 40 H 0.170 0.830 41 H 0.101 0.899 42 H 0.097 0.903 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -26.111 3.655 -3.343 26.577 hybrid contribution 1.097 -1.075 -0.009 1.536 sum -25.014 2.580 -3.352 25.369 Atomic orbital electron populations 1.22881 0.76970 1.03116 1.02501 1.86267 1.23113 1.24080 1.87776 1.19575 0.88905 0.84716 0.92358 1.21185 0.92456 0.98513 1.06670 1.20198 0.93896 0.93155 0.98140 1.17990 0.85585 0.84702 0.77085 1.90797 1.73965 1.26177 1.48923 1.45305 1.06462 1.08480 1.73256 1.21956 0.76844 0.98241 1.04324 0.84762 1.24380 0.98634 1.03220 0.93941 0.87782 1.21072 0.86940 0.95845 0.93020 1.46044 1.18663 1.66154 1.01398 1.19054 0.91928 1.30096 0.94137 0.90453 1.24874 0.98495 1.00856 0.96205 1.69892 1.40068 1.46625 0.99715 0.86046 0.82541 0.79766 0.77393 1.20402 1.21716 1.21658 1.21692 0.82150 0.99786 0.90351 1.24593 0.99723 0.98398 0.96974 0.87900 1.21949 0.93192 0.99951 1.02324 1.20914 0.91651 0.91872 0.92734 1.20773 0.99080 0.92751 1.03564 1.66990 1.41208 0.98489 1.18685 0.88462 0.92213 0.92225 0.83623 0.76460 0.92902 0.95522 0.93601 0.94886 0.88933 0.83026 0.89897 0.90251 0.89963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.38 101.05 1.05 1.33 16 2 O -0.31 -3.05 10.47 -18.78 -0.20 -3.25 16 3 C 0.32 3.52 7.49 -17.16 -0.13 3.39 16 4 C -0.17 -1.75 9.55 -38.84 -0.37 -2.12 16 5 C -0.04 -0.51 5.91 -104.67 -0.62 -1.13 16 6 C 0.56 8.00 7.80 -12.18 -0.09 7.91 16 7 O -0.52 -9.21 16.01 5.35 0.09 -9.13 16 8 N -0.69 -9.23 5.52 -54.65 -0.30 -9.53 16 9 C 0.09 1.52 5.97 -67.93 -0.41 1.11 16 10 H 0.13 2.50 7.40 -51.93 -0.38 2.12 16 11 C -0.18 -3.16 7.05 -89.30 -0.63 -3.79 16 12 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 13 C 0.16 3.31 7.05 -2.40 -0.02 3.29 16 14 N -0.60 -15.20 3.45 -165.82 -0.57 -15.77 16 15 C -0.22 -6.20 10.36 -15.06 -0.16 -6.36 16 16 H 0.08 2.07 7.85 -52.49 -0.41 1.66 16 17 C -0.01 -0.21 5.41 -17.43 -0.09 -0.30 16 18 N -0.92 -26.71 10.84 55.49 0.60 -26.10 16 19 Si 0.91 21.87 29.56 -169.99 -5.03 16.84 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 C 0.18 4.37 5.91 -0.37 0.00 4.37 16 24 C -0.18 -3.23 6.96 -89.30 -0.62 -3.86 16 25 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 26 C -0.15 -1.64 9.30 -39.03 -0.36 -2.00 16 27 C 0.16 1.58 6.77 -82.65 -0.56 1.02 16 28 C -0.10 -0.64 10.16 36.01 0.37 -0.27 16 29 N -0.53 -5.60 9.09 -9.59 -0.09 -5.68 16 30 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.40 8.10 -51.93 -0.42 -0.02 16 32 H 0.06 0.40 8.10 -51.93 -0.42 -0.02 16 33 H 0.15 1.25 6.53 -52.49 -0.34 0.90 16 34 H 0.40 4.28 6.96 -40.82 -0.28 4.00 16 35 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.25 7.14 8.31 -40.82 -0.34 6.81 16 38 H 0.03 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.09 2.43 6.58 -51.93 -0.34 2.08 16 40 H 0.15 1.52 7.74 -52.49 -0.41 1.12 16 41 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.08 0.39 8.07 -51.92 -0.42 -0.02 16 LS Contribution 363.14 15.07 5.47 5.47 Total: -1.00 -32.87 363.14 -8.62 -41.49 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -5.95 Total: 3.08 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -2.65 Total: 2.59 kcal Atomic # 7 Polarization: -56.73 SS G_CDS: -0.36 Total: -57.09 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: -0.11 Total: -12.38 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.87 -8.62 -41.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961607437.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.237 kcal (2) G-P(sol) polarization free energy of solvation -32.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds