Wall clock time and date at job start Tue Mar 31 2020 11:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38350 * 119.40488 * 2 1 4 4 C 1.38337 * 119.45675 * 180.02562 * 3 2 1 5 5 C 1.39987 * 118.35078 * 0.02562 * 4 3 2 6 6 C 1.47526 * 120.59875 * 180.02562 * 5 4 3 7 7 O 1.21585 * 119.99706 * 180.02562 * 6 5 4 8 8 N 1.34771 * 119.99804 * 359.97438 * 6 5 4 9 9 C 1.46497 * 119.99975 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.47642 * 180.02562 * 9 8 6 11 11 H 1.09001 * 115.51273 * 29.58456 * 10 9 8 12 12 C 1.52997 * 117.44510 * 244.24148 * 10 9 8 13 13 H 1.09001 * 119.53689 * 4.11662 * 12 10 9 14 14 C 1.57692 * 116.11049 * 161.63329 * 12 10 9 15 15 N 1.48152 * 104.67460 * 87.31020 * 14 12 10 16 16 C 1.36928 * 127.84326 * 139.76983 * 15 14 12 17 17 H 1.07999 * 120.00877 * 195.59053 * 16 15 14 18 18 C 1.38825 * 119.99705 * 15.59687 * 16 15 14 19 19 N 1.31618 * 120.00008 * 9.01308 * 18 16 15 20 20 Si 1.86793 * 119.99744 * 189.01466 * 18 16 15 21 21 H 1.48499 * 109.47277 * 94.45694 * 20 18 16 22 22 H 1.48504 * 109.47008 * 214.45760 * 20 18 16 23 23 H 1.48494 * 109.47557 * 334.45630 * 20 18 16 24 24 C 1.48152 * 104.32100 * 319.77196 * 15 14 12 25 25 C 1.52994 * 117.44628 * 174.99790 * 10 9 8 26 26 H 1.09002 * 119.53866 * 355.87994 * 25 10 9 27 27 C 1.40283 * 118.80355 * 359.97438 * 5 4 3 28 28 O 1.35425 * 119.79964 * 180.02562 * 27 5 4 29 29 N 1.31878 * 119.40565 * 179.97438 * 2 1 3 30 30 H 1.09005 * 109.46742 * 270.01697 * 1 2 3 31 31 H 1.08994 * 109.47286 * 30.01711 * 1 2 3 32 32 H 1.08997 * 109.47175 * 150.02443 * 1 2 3 33 33 H 1.08000 * 120.27697 * 0.02706 * 3 2 1 34 34 H 1.08004 * 120.82428 * 179.97438 * 4 3 2 35 35 H 0.97004 * 120.00154 * 0.02562 * 8 6 5 36 36 H 1.09010 * 109.47342 * 299.99983 * 9 8 6 37 37 H 1.09000 * 109.47171 * 59.99780 * 9 8 6 38 38 H 1.08999 * 110.92483 * 328.23347 * 14 12 10 39 39 H 1.09004 * 109.93583 * 205.88324 * 14 12 10 40 40 H 0.96992 * 119.99805 * 180.02562 * 19 18 16 41 41 H 1.09003 * 110.40849 * 280.80087 * 24 15 14 42 42 H 1.08997 * 110.40700 * 158.36883 * 24 15 14 43 43 H 0.96697 * 114.00207 * 270.00520 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5697 1.2065 -0.0005 5 6 4.2355 -0.0248 -0.0016 6 6 5.7097 -0.0814 -0.0017 7 8 6.2768 -1.1569 -0.0031 8 7 6.4278 1.0591 -0.0012 9 6 7.8917 1.0030 -0.0018 10 6 8.4567 2.4249 -0.0004 11 1 7.8352 3.1766 0.4863 12 6 9.2650 2.8637 -1.2231 13 1 9.3578 2.1908 -2.0756 14 6 9.4486 4.4184 -1.4122 15 7 10.6579 4.7521 -0.6241 16 6 11.6646 5.6186 -0.9566 17 1 12.6029 5.5870 -0.4227 18 6 11.4792 6.5381 -1.9800 19 7 10.2857 6.7003 -2.5108 20 14 12.9235 7.5451 -2.6038 21 1 13.5250 6.8707 -3.7822 22 1 12.4516 8.8978 -2.9949 23 1 13.9421 7.6675 -1.5302 24 6 10.5308 3.9355 0.6055 25 6 9.9741 2.5806 0.1176 26 1 10.5952 1.6969 0.2638 27 6 3.4757 -1.2041 -0.0016 28 8 4.0991 -2.4064 -0.0021 29 7 2.1545 -1.1489 0.0005 30 1 -0.3633 0.0003 1.0277 31 1 -0.3633 0.8898 -0.5141 32 1 -0.3633 -0.8902 -0.5134 33 1 1.6411 2.1376 0.0004 34 1 4.1223 2.1345 -0.0010 35 1 5.9753 1.9172 -0.0004 36 1 8.2355 0.4750 0.8878 37 1 8.2347 0.4762 -0.8922 38 1 8.5842 4.9618 -1.0304 39 1 9.6063 4.6486 -2.4659 40 1 10.1563 7.3424 -3.2261 41 1 9.8355 4.4034 1.3024 42 1 11.5057 3.7994 1.0737 43 1 4.2799 -2.7553 -0.8856 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000978805013.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:30 Heat of formation + Delta-G solvation = 21.654232 kcal Electronic energy + Delta-G solvation = -25284.405082 eV Core-core repulsion = 21524.884017 eV Total energy + Delta-G solvation = -3759.521066 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.16453 -39.43077 -38.55895 -37.46780 -35.01022 -33.78363 -33.06022 -31.97490 -30.86612 -28.66544 -27.10727 -27.00066 -24.98444 -23.57802 -23.29415 -21.18602 -20.93520 -20.00232 -19.31259 -18.92028 -17.91477 -17.27554 -16.84492 -16.14591 -15.64384 -15.33139 -15.03887 -14.82509 -14.61992 -14.25684 -14.17133 -13.66331 -13.46030 -13.14378 -13.00878 -12.80313 -12.70597 -12.65544 -12.42727 -11.89465 -11.87613 -11.29194 -11.13352 -10.87508 -10.70955 -10.38010 -10.32667 -10.26985 -10.14631 -9.79617 -9.73111 -9.49059 -9.22824 -9.14509 -8.95910 -8.68955 -6.91583 -5.84489 -3.18766 0.21995 0.71750 2.61132 2.91284 3.17747 3.35265 3.40972 3.42702 3.45695 4.09390 4.14188 4.23217 4.40169 4.42199 4.56748 4.82031 4.93163 4.97206 5.12763 5.15056 5.28813 5.33514 5.38993 5.45551 5.47986 5.53510 5.60235 5.73314 5.86539 5.87917 5.90842 6.03313 6.08201 6.28703 6.50478 6.62735 6.67460 6.86834 7.20761 7.28737 7.35937 7.48116 7.50727 7.67433 8.06437 8.16441 9.06819 9.69299 10.46306 11.29818 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024259 B = 0.002259 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.913456 B =12394.307482 C =13186.718811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.174 3.826 3 C -0.191 4.191 4 C -0.024 4.024 5 C -0.211 4.211 6 C 0.561 3.439 7 O -0.523 6.523 8 N -0.719 5.719 9 C 0.156 3.844 10 C -0.155 4.155 11 H 0.102 0.898 12 C -0.170 4.170 13 H 0.106 0.894 14 C 0.186 3.814 15 N -0.595 5.595 16 C -0.226 4.226 17 H 0.077 0.923 18 C -0.006 4.006 19 N -0.916 5.916 20 Si 0.914 3.086 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.279 1.279 24 C 0.154 3.846 25 C -0.164 4.164 26 H 0.103 0.897 27 C 0.375 3.625 28 O -0.460 6.460 29 N -0.511 5.511 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.147 0.853 34 H 0.146 0.854 35 H 0.400 0.600 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.026 0.974 39 H 0.088 0.912 40 H 0.254 0.746 41 H 0.025 0.975 42 H 0.051 0.949 43 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.666 -11.743 3.937 22.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.036 3.964 3 C -0.211 4.211 4 C -0.050 4.050 5 C -0.217 4.217 6 C 0.347 3.653 7 O -0.400 6.400 8 N -0.371 5.371 9 C 0.033 3.967 10 C -0.174 4.174 11 H 0.120 0.880 12 C -0.190 4.190 13 H 0.124 0.876 14 C 0.060 3.940 15 N -0.318 5.318 16 C -0.354 4.354 17 H 0.095 0.905 18 C -0.203 4.203 19 N -0.563 5.563 20 Si 0.744 3.256 21 H -0.215 1.215 22 H -0.217 1.217 23 H -0.205 1.205 24 C 0.027 3.973 25 C -0.185 4.185 26 H 0.121 0.879 27 C 0.195 3.805 28 O -0.268 6.268 29 N -0.231 5.231 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.164 0.836 34 H 0.163 0.837 35 H 0.235 0.765 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.044 0.956 39 H 0.106 0.894 40 H 0.064 0.936 41 H 0.042 0.958 42 H 0.069 0.931 43 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -18.546 -13.045 4.376 23.093 hybrid contribution 1.035 1.590 -0.793 2.056 sum -17.511 -11.455 3.583 21.230 Atomic orbital electron populations 1.20843 0.88066 1.04063 1.03694 1.21304 0.97145 0.87216 0.90730 1.21932 0.94498 0.99705 1.04931 1.21793 0.94667 0.97147 0.91370 1.21137 0.95007 0.94466 1.11121 1.17785 0.85899 0.84422 0.77243 1.90816 1.71749 1.28417 1.49016 1.45922 1.07726 1.08400 1.75015 1.20901 0.77843 0.95774 1.02193 1.22545 0.94625 0.95714 1.04497 0.87952 1.25104 1.02076 1.01254 0.90523 0.87623 1.21657 0.88460 0.84749 0.99140 1.45158 1.23412 1.48102 1.15094 1.19024 0.91682 1.08926 1.15809 0.90513 1.24904 0.96813 0.98142 1.00477 1.69888 1.19966 1.37829 1.28597 0.86078 0.81374 0.79292 0.78880 1.21507 1.21658 1.20469 1.21167 0.97639 0.88268 0.90184 1.23792 0.91483 1.00243 1.02967 0.87891 1.19132 0.86046 0.85153 0.90155 1.84713 1.76355 1.31861 1.33830 1.67150 1.09349 1.30466 1.16128 0.89718 0.89990 0.90025 0.83565 0.83653 0.76474 0.91104 0.91206 0.95648 0.89369 0.93561 0.95755 0.93067 0.73425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.55 10.16 36.01 0.37 -0.18 16 2 C 0.17 1.46 6.78 -82.53 -0.56 0.90 16 3 C -0.19 -1.34 9.71 -39.50 -0.38 -1.72 16 4 C -0.02 -0.19 9.64 -38.89 -0.37 -0.57 16 5 C -0.21 -2.35 5.90 -104.69 -0.62 -2.97 16 6 C 0.56 7.35 7.77 -12.48 -0.10 7.25 16 7 O -0.52 -8.53 15.19 -16.48 -0.25 -8.78 16 8 N -0.72 -8.33 5.51 -61.35 -0.34 -8.66 16 9 C 0.16 2.05 5.95 -4.04 -0.02 2.02 16 10 C -0.15 -2.27 5.34 -90.62 -0.48 -2.75 16 11 H 0.10 1.48 8.04 -51.93 -0.42 1.06 16 12 C -0.17 -3.06 7.03 -87.38 -0.61 -3.67 16 13 H 0.11 1.82 8.12 -51.93 -0.42 1.40 16 14 C 0.19 4.31 5.76 -0.57 0.00 4.30 16 15 N -0.59 -14.93 3.38 -166.72 -0.56 -15.49 16 16 C -0.23 -6.21 10.35 -15.06 -0.16 -6.37 16 17 H 0.08 2.04 7.84 -52.49 -0.41 1.63 16 18 C -0.01 -0.18 5.40 -17.43 -0.09 -0.27 16 19 N -0.92 -26.31 10.86 55.49 0.60 -25.70 16 20 Si 0.91 21.65 29.56 -169.99 -5.03 16.62 16 21 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 C 0.15 3.14 7.04 -2.40 -0.02 3.12 16 25 C -0.16 -2.82 6.77 -89.22 -0.60 -3.43 16 26 H 0.10 1.63 8.14 -51.93 -0.42 1.20 16 27 C 0.38 4.50 7.77 -16.61 -0.13 4.37 16 28 O -0.46 -5.61 11.66 -39.74 -0.46 -6.07 16 29 N -0.51 -5.72 10.28 -9.21 -0.09 -5.81 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.24 8.07 -51.93 -0.42 -0.18 16 32 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.15 0.59 8.06 -52.49 -0.42 0.17 16 34 H 0.15 0.83 6.52 -52.48 -0.34 0.49 16 35 H 0.40 3.69 6.50 -40.82 -0.27 3.43 16 36 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 37 H 0.07 0.97 7.94 -51.93 -0.41 0.56 16 38 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 2.31 6.50 -51.93 -0.34 1.97 16 40 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.41 3.26 9.06 45.56 0.41 3.67 16 LS Contribution 361.09 15.07 5.44 5.44 Total: -1.00 -34.36 361.09 -9.62 -43.98 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -5.13 Total: 4.44 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -3.79 Total: 0.04 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: -0.39 Total: -55.67 kcal Atomic # 8 Polarization: -14.13 SS G_CDS: -0.71 Total: -14.85 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.36 -9.62 -43.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978805013.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.630 kcal (2) G-P(sol) polarization free energy of solvation -34.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds