Wall clock time and date at job start Tue Mar 31 2020 11:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38350 * 119.40488 * 2 1 4 4 C 1.38337 * 119.45675 * 180.02562 * 3 2 1 5 5 C 1.39987 * 118.35078 * 0.02562 * 4 3 2 6 6 C 1.47526 * 120.59875 * 180.02562 * 5 4 3 7 7 O 1.21585 * 119.99706 * 180.02562 * 6 5 4 8 8 N 1.34771 * 119.99804 * 359.97438 * 6 5 4 9 9 C 1.46497 * 119.99975 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.47642 * 180.02562 * 9 8 6 11 11 H 1.09001 * 115.51273 * 29.58456 * 10 9 8 12 12 C 1.52997 * 117.44510 * 244.24148 * 10 9 8 13 13 H 1.09001 * 119.53689 * 4.11662 * 12 10 9 14 14 C 1.57692 * 116.11049 * 161.63329 * 12 10 9 15 15 N 1.48152 * 104.67460 * 87.31020 * 14 12 10 16 16 C 1.36928 * 127.84326 * 139.76983 * 15 14 12 17 17 H 1.07999 * 120.00877 * 195.59053 * 16 15 14 18 18 C 1.38825 * 119.99705 * 15.59687 * 16 15 14 19 19 N 1.31618 * 120.00008 * 9.01308 * 18 16 15 20 20 Si 1.86793 * 119.99744 * 189.01466 * 18 16 15 21 21 H 1.48499 * 109.47277 * 94.45694 * 20 18 16 22 22 H 1.48504 * 109.47008 * 214.45760 * 20 18 16 23 23 H 1.48494 * 109.47557 * 334.45630 * 20 18 16 24 24 C 1.48152 * 104.32100 * 319.77196 * 15 14 12 25 25 C 1.52994 * 117.44628 * 174.99790 * 10 9 8 26 26 H 1.09002 * 119.53866 * 355.87994 * 25 10 9 27 27 C 1.40283 * 118.80355 * 359.97438 * 5 4 3 28 28 O 1.35425 * 119.79964 * 180.02562 * 27 5 4 29 29 N 1.31878 * 119.40565 * 179.97438 * 2 1 3 30 30 H 1.09005 * 109.46742 * 270.01697 * 1 2 3 31 31 H 1.08994 * 109.47286 * 30.01711 * 1 2 3 32 32 H 1.08997 * 109.47175 * 150.02443 * 1 2 3 33 33 H 1.08000 * 120.27697 * 0.02706 * 3 2 1 34 34 H 1.08004 * 120.82428 * 179.97438 * 4 3 2 35 35 H 0.97004 * 120.00154 * 0.02562 * 8 6 5 36 36 H 1.09010 * 109.47342 * 299.99983 * 9 8 6 37 37 H 1.09000 * 109.47171 * 59.99780 * 9 8 6 38 38 H 1.08999 * 110.92483 * 328.23347 * 14 12 10 39 39 H 1.09004 * 109.93583 * 205.88324 * 14 12 10 40 40 H 0.96992 * 119.99805 * 180.02562 * 19 18 16 41 41 H 1.09003 * 110.40849 * 280.80087 * 24 15 14 42 42 H 1.08997 * 110.40700 * 158.36883 * 24 15 14 43 43 H 0.96697 * 114.00207 * 270.00520 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5697 1.2065 -0.0005 5 6 4.2355 -0.0248 -0.0016 6 6 5.7097 -0.0814 -0.0017 7 8 6.2768 -1.1569 -0.0031 8 7 6.4278 1.0591 -0.0012 9 6 7.8917 1.0030 -0.0018 10 6 8.4567 2.4249 -0.0004 11 1 7.8352 3.1766 0.4863 12 6 9.2650 2.8637 -1.2231 13 1 9.3578 2.1908 -2.0756 14 6 9.4486 4.4184 -1.4122 15 7 10.6579 4.7521 -0.6241 16 6 11.6646 5.6186 -0.9566 17 1 12.6029 5.5870 -0.4227 18 6 11.4792 6.5381 -1.9800 19 7 10.2857 6.7003 -2.5108 20 14 12.9235 7.5451 -2.6038 21 1 13.5250 6.8707 -3.7822 22 1 12.4516 8.8978 -2.9949 23 1 13.9421 7.6675 -1.5302 24 6 10.5308 3.9355 0.6055 25 6 9.9741 2.5806 0.1176 26 1 10.5952 1.6969 0.2638 27 6 3.4757 -1.2041 -0.0016 28 8 4.0991 -2.4064 -0.0021 29 7 2.1545 -1.1489 0.0005 30 1 -0.3633 0.0003 1.0277 31 1 -0.3633 0.8898 -0.5141 32 1 -0.3633 -0.8902 -0.5134 33 1 1.6411 2.1376 0.0004 34 1 4.1223 2.1345 -0.0010 35 1 5.9753 1.9172 -0.0004 36 1 8.2355 0.4750 0.8878 37 1 8.2347 0.4762 -0.8922 38 1 8.5842 4.9618 -1.0304 39 1 9.6063 4.6486 -2.4659 40 1 10.1563 7.3424 -3.2261 41 1 9.8355 4.4034 1.3024 42 1 11.5057 3.7994 1.0737 43 1 4.2799 -2.7553 -0.8856 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000978805013.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:30 Heat of formation + Delta-G solvation = -3.592259 kcal Electronic energy + Delta-G solvation = -25285.499852 eV Core-core repulsion = 21524.884017 eV Total energy + Delta-G solvation = -3760.615836 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.93603 -40.58938 -39.84801 -38.26501 -36.33060 -35.13465 -34.08259 -32.63653 -32.61004 -29.53468 -28.73112 -28.33401 -26.57563 -24.34953 -24.01144 -22.83735 -21.96715 -21.31839 -20.81363 -19.72108 -18.89554 -18.74484 -18.05691 -16.98447 -16.86960 -16.55585 -16.20314 -16.09792 -15.54337 -15.44056 -15.14125 -14.84358 -14.65434 -14.53153 -14.21493 -14.05684 -13.57454 -13.36561 -13.17614 -13.10722 -13.01440 -12.87296 -12.74413 -12.62908 -12.30479 -11.92074 -11.90473 -11.75449 -11.33627 -11.02736 -10.94185 -10.71031 -10.63999 -10.44396 -10.14678 -9.80860 -8.90235 -7.92033 -5.27867 -0.50490 0.06759 1.46598 1.48017 1.57072 1.75448 1.95681 2.45242 2.47908 2.69905 2.78436 3.25730 3.45886 3.58728 3.66387 3.69996 3.73985 3.86446 3.93128 4.18506 4.27198 4.27858 4.42067 4.42764 4.48407 4.68083 4.68695 4.72367 4.80781 4.90294 4.93808 5.02969 5.04385 5.14105 5.18734 5.35569 5.41120 5.44870 5.50438 5.53423 5.67413 6.18800 6.41893 6.53469 6.81824 7.02001 7.11885 7.68504 8.46831 9.21482 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024259 B = 0.002259 C = 0.002123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.913456 B =12394.307482 C =13186.718811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.166 3.834 3 C -0.181 4.181 4 C -0.020 4.020 5 C -0.229 4.229 6 C 0.561 3.439 7 O -0.562 6.562 8 N -0.709 5.709 9 C 0.164 3.836 10 C -0.112 4.112 11 H 0.112 0.888 12 C -0.177 4.177 13 H 0.115 0.885 14 C 0.189 3.811 15 N -0.621 5.621 16 C -0.240 4.240 17 H 0.079 0.921 18 C -0.062 4.062 19 N -0.946 5.946 20 Si 0.978 3.022 21 H -0.288 1.288 22 H -0.293 1.293 23 H -0.267 1.267 24 C 0.149 3.851 25 C -0.161 4.161 26 H 0.124 0.876 27 C 0.355 3.645 28 O -0.481 6.481 29 N -0.537 5.537 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.075 0.925 33 H 0.185 0.815 34 H 0.172 0.828 35 H 0.413 0.587 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.010 0.990 39 H 0.050 0.950 40 H 0.250 0.750 41 H 0.029 0.971 42 H 0.055 0.945 43 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.860 -11.373 4.690 23.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.028 3.972 3 C -0.200 4.200 4 C -0.045 4.045 5 C -0.236 4.236 6 C 0.349 3.651 7 O -0.442 6.442 8 N -0.362 5.362 9 C 0.041 3.959 10 C -0.131 4.131 11 H 0.130 0.870 12 C -0.197 4.197 13 H 0.133 0.867 14 C 0.064 3.936 15 N -0.345 5.345 16 C -0.369 4.369 17 H 0.097 0.903 18 C -0.256 4.256 19 N -0.594 5.594 20 Si 0.807 3.193 21 H -0.215 1.215 22 H -0.219 1.219 23 H -0.192 1.192 24 C 0.024 3.976 25 C -0.181 4.181 26 H 0.141 0.859 27 C 0.175 3.825 28 O -0.290 6.290 29 N -0.258 5.258 30 H 0.113 0.887 31 H 0.128 0.872 32 H 0.094 0.906 33 H 0.202 0.798 34 H 0.190 0.810 35 H 0.251 0.749 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.028 0.972 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.046 0.954 42 H 0.074 0.926 43 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -19.753 -12.675 5.150 24.028 hybrid contribution 1.301 1.486 -0.986 2.208 sum -18.452 -11.189 4.165 21.977 Atomic orbital electron populations 1.20970 0.85731 1.05152 1.04641 1.22001 0.98752 0.87046 0.89369 1.22355 0.94121 1.00674 1.02842 1.22137 0.95447 0.96859 0.90078 1.21016 0.93746 0.95520 1.13298 1.18069 0.86759 0.83975 0.76310 1.90792 1.72638 1.29813 1.50950 1.45767 1.07055 1.08839 1.74497 1.20722 0.78717 0.94221 1.02267 1.22431 0.93256 0.96689 1.00751 0.87000 1.24778 1.05233 0.97700 0.91981 0.86689 1.21422 0.87419 0.88191 0.96599 1.45470 1.23358 1.48447 1.17258 1.19377 0.92523 1.09223 1.15747 0.90319 1.25714 0.99256 0.99635 1.00997 1.70071 1.21750 1.38499 1.29033 0.85065 0.78598 0.77375 0.78309 1.21451 1.21940 1.19205 1.21310 0.98343 0.89179 0.88814 1.23722 0.93487 0.99224 1.01647 0.85852 1.19336 0.86629 0.85227 0.91284 1.84659 1.76683 1.32573 1.35107 1.67182 1.09087 1.32213 1.17298 0.88653 0.87239 0.90623 0.79785 0.81048 0.74921 0.90681 0.91618 0.97207 0.93154 0.94093 0.95364 0.92608 0.72247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.16 71.24 0.72 -0.07 16 2 C 0.17 2.42 6.78 42.58 0.29 2.71 16 3 C -0.18 -1.92 9.71 22.32 0.22 -1.71 16 4 C -0.02 -0.27 9.64 22.72 0.22 -0.05 16 5 C -0.23 -4.86 5.90 -19.91 -0.12 -4.98 16 6 C 0.56 14.17 7.77 86.69 0.67 14.84 16 7 O -0.56 -18.29 15.19 16.83 0.26 -18.04 16 8 N -0.71 -14.88 5.51 -466.28 -2.57 -17.45 16 9 C 0.16 3.92 5.95 86.38 0.51 4.43 16 10 C -0.11 -3.02 5.34 -10.80 -0.06 -3.07 16 11 H 0.11 2.88 8.04 -2.39 -0.02 2.86 16 12 C -0.18 -6.20 7.03 -8.70 -0.06 -6.26 16 13 H 0.12 3.83 8.12 -2.39 -0.02 3.81 16 14 C 0.19 8.91 5.76 87.72 0.51 9.42 16 15 N -0.62 -31.42 3.38 -681.37 -2.30 -33.72 16 16 C -0.24 -13.30 10.35 84.04 0.87 -12.43 16 17 H 0.08 4.20 7.84 -2.91 -0.02 4.17 16 18 C -0.06 -3.49 5.40 84.87 0.46 -3.03 16 19 N -0.95 -55.66 10.86 21.66 0.24 -55.43 16 20 Si 0.98 44.94 29.56 68.60 2.03 46.96 16 21 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 22 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 23 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 24 C 0.15 5.92 7.04 86.54 0.61 6.53 16 25 C -0.16 -5.19 6.77 -9.89 -0.07 -5.25 16 26 H 0.12 3.54 8.14 -2.39 -0.02 3.52 16 27 C 0.35 8.51 7.77 85.13 0.66 9.17 16 28 O -0.48 -12.20 11.66 -66.39 -0.77 -12.98 16 29 N -0.54 -11.71 10.28 -296.06 -3.04 -14.76 16 30 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.11 0.20 8.07 -2.39 -0.02 0.18 16 32 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.18 0.53 8.06 -2.91 -0.02 0.51 16 34 H 0.17 1.30 6.52 -2.91 -0.02 1.28 16 35 H 0.41 6.39 6.50 -92.71 -0.60 5.79 16 36 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 37 H 0.07 1.69 7.94 -2.39 -0.02 1.67 16 38 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 39 H 0.05 2.73 6.50 -2.39 -0.02 2.71 16 40 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 41 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.42 7.31 9.06 -74.06 -0.67 6.64 16 Total: -1.00 -76.96 361.09 -0.95 -77.91 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: -0.22 Total: 17.22 kcal Atomic # 6 Polarization: 4.83 SS G_CDS: 5.44 Total: 10.27 kcal Atomic # 7 Polarization: -113.67 SS G_CDS: -7.68 Total: -121.35 kcal Atomic # 8 Polarization: -30.50 SS G_CDS: -0.52 Total: -31.02 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -76.96 -0.95 -77.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000978805013.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.322 kcal (2) G-P(sol) polarization free energy of solvation -76.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds