Wall clock time and date at job start Tue Mar 31 2020 11:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00281 * 2 1 4 4 H 1.48507 * 109.47311 * 240.00207 * 3 2 1 5 5 H 1.48499 * 109.46959 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47261 * 120.00035 * 3 2 1 7 7 C 1.38816 * 119.99523 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00000 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00139 * 359.97438 * 7 2 1 10 10 C 1.46507 * 119.99711 * 180.02562 * 9 7 2 11 11 H 1.08996 * 109.46955 * 324.99786 * 10 9 7 12 12 C 1.52996 * 109.47258 * 85.00171 * 10 9 7 13 13 C 1.52997 * 109.47131 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.46991 * 299.99311 * 13 12 10 15 15 C 1.53006 * 109.46626 * 60.00378 * 14 13 12 16 16 H 1.09001 * 109.46801 * 59.99811 * 15 14 13 17 17 N 1.46500 * 109.46998 * 179.97438 * 15 14 13 18 18 C 1.34773 * 119.99910 * 275.00232 * 17 15 14 19 19 O 1.21729 * 120.00319 * 359.97438 * 18 17 15 20 20 C 1.46500 * 119.99910 * 180.02562 * 18 17 15 21 21 C 1.37780 * 125.85435 * 179.69021 * 20 18 17 22 22 C 1.39943 * 107.68326 * 179.87564 * 21 20 18 23 23 O 1.35114 * 145.13883 * 179.97438 * 22 21 20 24 24 C 1.34375 * 109.62414 * 180.44155 * 23 22 21 25 25 C 1.34457 * 109.44672 * 0.02562 * 24 23 22 26 26 C 1.39133 * 107.40335 * 0.38416 * 22 21 20 27 27 N 1.37113 * 108.11093 * 359.75920 * 26 22 21 28 28 H 0.97001 * 125.74142 * 179.97438 * 27 26 22 29 29 C 1.52997 * 109.47127 * 299.99539 * 15 14 13 30 30 H 0.97004 * 120.00005 * 0.02562 * 1 2 3 31 31 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 32 32 H 1.09001 * 109.46993 * 300.00050 * 12 10 9 33 33 H 1.09000 * 109.47380 * 59.99156 * 12 10 9 34 34 H 1.09002 * 109.47153 * 179.97438 * 13 12 10 35 35 H 1.08993 * 109.47194 * 60.00154 * 13 12 10 36 36 H 1.08993 * 109.47839 * 300.00447 * 14 13 12 37 37 H 1.09000 * 109.47160 * 180.02562 * 14 13 12 38 38 H 0.96995 * 120.00293 * 94.99410 * 17 15 14 39 39 H 1.07995 * 126.16249 * 0.02562 * 21 20 18 40 40 H 1.08004 * 125.27686 * 180.02562 * 24 23 22 41 41 H 1.08001 * 126.41403 * 180.02562 * 25 24 23 42 42 H 1.09002 * 109.47153 * 180.02562 * 29 15 14 43 43 H 1.08996 * 109.46952 * 300.00302 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6569 -0.0005 11 1 2.9686 -3.5506 -0.5900 12 6 2.4218 -4.0357 1.4364 13 6 3.1862 -5.3611 1.4365 14 6 2.3084 -6.4561 0.8271 15 6 1.9445 -6.0772 -0.6099 16 1 2.8553 -5.9714 -1.1994 17 7 1.1045 -7.1260 -1.1936 18 6 1.6740 -8.2081 -1.7601 19 8 2.8864 -8.3140 -1.7872 20 6 0.8340 -9.2566 -2.3443 21 6 1.2860 -10.4053 -2.9564 22 6 0.1661 -11.1351 -3.3706 23 8 -0.2582 -12.2605 -3.9863 24 6 -1.6012 -12.2731 -4.0281 25 6 -2.0778 -11.1602 -3.4432 26 6 -0.9626 -10.4069 -3.0080 27 7 -0.5470 -9.2604 -2.3813 28 1 -1.1252 -8.5682 -2.0244 29 6 1.1801 -4.7519 -0.6099 30 1 -0.4850 0.8401 -0.0004 31 1 0.3554 -2.3881 -0.0005 32 1 3.0467 -3.2554 1.8708 33 1 1.5111 -4.1419 2.0259 34 1 3.4458 -5.6308 2.4602 35 1 4.0968 -5.2553 0.8470 36 1 1.3978 -6.5619 1.4166 37 1 2.8528 -7.4004 0.8276 38 1 0.1385 -7.0416 -1.1723 39 1 2.3185 -10.6922 -3.0900 40 1 -2.2044 -13.0559 -4.4639 41 1 -3.1175 -10.8924 -3.3261 42 1 0.9205 -4.4822 -1.6337 43 1 0.2695 -4.8577 -0.0204 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981122215.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:07 Heat of formation + Delta-G solvation = 25.274160 kcal Electronic energy + Delta-G solvation = -25611.133609 eV Core-core repulsion = 21851.769515 eV Total energy + Delta-G solvation = -3759.364094 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.21828 -40.48658 -39.13492 -37.81581 -34.81983 -33.44326 -32.66955 -31.18223 -30.95529 -29.81964 -28.37432 -27.69248 -24.22502 -23.65066 -22.01864 -21.98442 -21.17002 -20.92128 -20.33535 -19.46380 -18.63399 -17.45782 -16.99235 -16.55347 -16.45162 -15.68258 -15.23424 -15.03713 -14.47373 -14.34665 -13.97262 -13.93671 -13.77473 -13.62509 -13.39220 -13.19437 -13.10407 -12.72164 -12.20548 -12.12169 -12.05265 -11.03605 -11.01668 -10.89393 -10.77416 -10.49227 -10.40509 -10.39425 -10.25725 -10.19988 -9.80456 -9.65884 -9.15496 -8.91795 -8.89937 -8.17364 -6.99958 -5.79962 -3.08713 0.70543 1.94597 2.18335 2.36764 2.56521 3.05900 3.13276 3.42498 3.47109 3.47774 4.24747 4.42585 4.54998 4.65918 4.90940 4.96324 5.01907 5.17873 5.19682 5.26081 5.44665 5.48194 5.55014 5.62620 5.67729 5.79032 5.81729 5.91566 5.96616 6.00457 6.09195 6.20222 6.23854 6.27122 6.45970 6.48454 6.55446 6.68054 6.83295 6.92360 6.96460 7.08227 7.31541 7.67694 7.96401 8.38752 9.49932 10.06588 10.41285 11.42703 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.023378 B = 0.002349 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.443042 B =11917.569116 C =12625.577567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.014 4.014 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.724 5.724 10 C 0.184 3.816 11 H 0.050 0.950 12 C -0.137 4.137 13 C -0.114 4.114 14 C -0.124 4.124 15 C 0.149 3.851 16 H 0.092 0.908 17 N -0.720 5.720 18 C 0.588 3.412 19 O -0.520 6.520 20 C 0.009 3.991 21 C -0.080 4.080 22 C -0.041 4.041 23 O -0.168 6.168 24 C 0.011 3.989 25 C -0.203 4.203 26 C 0.011 3.989 27 N -0.531 5.531 28 H 0.421 0.579 29 C -0.130 4.130 30 H 0.255 0.745 31 H 0.383 0.617 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.394 0.606 39 H 0.161 0.839 40 H 0.212 0.788 41 H 0.154 0.846 42 H 0.069 0.931 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.344 -24.237 -4.575 25.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.738 3.262 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.364 5.364 10 C 0.073 3.927 11 H 0.068 0.932 12 C -0.178 4.178 13 C -0.153 4.153 14 C -0.163 4.163 15 C 0.046 3.954 16 H 0.110 0.890 17 N -0.369 5.369 18 C 0.374 3.626 19 O -0.396 6.396 20 C -0.103 4.103 21 C -0.108 4.108 22 C -0.092 4.092 23 O -0.066 6.066 24 C -0.057 4.057 25 C -0.224 4.224 26 C -0.103 4.103 27 N -0.136 5.136 28 H 0.259 0.741 29 C -0.169 4.169 30 H 0.065 0.935 31 H 0.216 0.784 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.227 0.773 39 H 0.179 0.821 40 H 0.229 0.771 41 H 0.172 0.828 42 H 0.088 0.912 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.197 -24.207 -4.651 24.856 hybrid contribution -1.062 1.377 0.279 1.762 sum -4.259 -22.829 -4.372 23.631 Atomic orbital electron populations 1.69647 1.05119 1.25777 1.57753 1.24740 0.95523 0.97709 1.03014 0.86271 0.78531 0.83520 0.77897 1.21237 1.21730 1.21250 1.19201 0.91009 0.84041 1.42660 0.91156 1.42390 1.05711 0.99699 1.88649 1.20095 0.94107 0.85465 0.93017 0.93233 1.22298 0.99748 0.95291 1.00430 1.21484 0.98529 0.95262 1.00052 1.21892 1.00216 0.99045 0.95158 1.21121 0.94452 0.85702 0.94164 0.88957 1.46051 1.10235 1.21252 1.59401 1.16829 0.87089 0.80671 0.77966 1.90887 1.12764 1.77658 1.58276 1.20365 0.81003 0.99160 1.09804 1.19912 0.97042 0.91544 1.02266 1.19290 0.95375 0.88606 1.05959 1.84029 1.21886 1.36709 1.63984 1.24062 0.80318 0.99642 1.01652 1.20575 0.97990 0.95832 1.07992 1.19037 0.95943 0.90569 1.04726 1.41161 1.05690 1.18124 1.48593 0.74088 1.22107 0.99373 0.93307 1.02087 0.93486 0.78368 0.91802 0.92684 0.92401 0.92041 0.92063 0.91963 0.77288 0.82129 0.77134 0.82836 0.91241 0.91733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.74 13.06 55.49 0.72 -27.01 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.18 29.55 -169.99 -5.02 17.16 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.24 -6.46 9.93 -15.06 -0.15 -6.61 16 8 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 9 N -0.72 -17.46 5.12 -53.42 -0.27 -17.73 16 10 C 0.18 3.45 2.77 -67.93 -0.19 3.26 16 11 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 12 C -0.14 -2.34 5.50 -26.73 -0.15 -2.49 16 13 C -0.11 -1.59 5.92 -26.73 -0.16 -1.74 16 14 C -0.12 -1.60 5.50 -26.73 -0.15 -1.75 16 15 C 0.15 1.98 2.45 -67.93 -0.17 1.81 16 16 H 0.09 1.38 7.57 -51.93 -0.39 0.99 16 17 N -0.72 -8.00 5.07 -55.16 -0.28 -8.28 16 18 C 0.59 7.50 7.74 -12.93 -0.10 7.40 16 19 O -0.52 -8.37 16.53 5.16 0.09 -8.29 16 20 C 0.01 0.10 7.03 -81.86 -0.58 -0.47 16 21 C -0.08 -0.93 10.58 -39.11 -0.41 -1.34 16 22 C -0.04 -0.46 8.20 -38.61 -0.32 -0.78 16 23 O -0.17 -1.72 10.68 3.23 0.03 -1.68 16 24 C 0.01 0.07 12.02 29.40 0.35 0.43 16 25 C -0.20 -1.51 10.89 -39.70 -0.43 -1.94 16 26 C 0.01 0.11 8.11 -83.95 -0.68 -0.58 16 27 N -0.53 -4.78 6.08 -7.04 -0.04 -4.82 16 28 H 0.42 2.56 8.16 -40.82 -0.33 2.23 16 29 C -0.13 -1.95 4.86 -26.73 -0.13 -2.08 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.38 9.77 7.80 -40.82 -0.32 9.45 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.39 3.31 7.69 -40.82 -0.31 3.00 16 39 H 0.16 1.72 8.06 -52.49 -0.42 1.30 16 40 H 0.21 0.42 8.06 -52.48 -0.42 -0.01 16 41 H 0.15 0.75 8.06 -52.49 -0.42 0.32 16 42 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 359.16 15.07 5.41 5.41 Total: -1.00 -33.43 359.16 -8.69 -42.12 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -5.97 Total: 10.50 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -3.35 Total: -7.37 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: 0.13 Total: -57.85 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.12 Total: -9.97 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.43 -8.69 -42.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981122215.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.389 kcal (2) G-P(sol) polarization free energy of solvation -33.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds