Wall clock time and date at job start Tue Mar 31 2020 11:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 120.00137 * 2 1 4 4 H 1.48495 * 109.46984 * 239.99671 * 3 2 1 5 5 H 1.48500 * 109.46904 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47058 * 119.99430 * 3 2 1 7 7 C 1.38810 * 119.99875 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00327 * 164.52980 * 7 2 1 9 9 N 1.36939 * 120.00352 * 344.52484 * 7 2 1 10 10 C 1.47010 * 121.37262 * 335.97266 * 9 7 2 11 11 C 1.50319 * 109.16396 * 222.96294 * 10 9 7 12 12 C 1.29457 * 123.65117 * 349.28755 * 11 10 9 13 13 C 1.50694 * 117.69284 * 180.57773 * 12 11 10 14 14 N 1.46502 * 109.47861 * 94.99351 * 13 12 11 15 15 C 1.34772 * 120.00569 * 179.97438 * 14 13 12 16 16 O 1.21685 * 119.99875 * 0.02562 * 15 14 13 17 17 C 1.46715 * 120.00131 * 179.97438 * 15 14 13 18 18 O 1.35341 * 126.64418 * 359.69305 * 17 15 14 19 19 C 1.33669 * 107.68532 * 179.83914 * 18 17 15 20 20 N 1.30615 * 109.15262 * 0.43004 * 19 18 17 21 21 C 1.33693 * 108.99749 * 359.73325 * 20 19 18 22 22 C 1.50698 * 126.27218 * 180.02562 * 21 20 19 23 23 C 1.52987 * 117.50148 * 8.70571 * 22 21 20 24 24 C 1.52993 * 117.50018 * 300.03894 * 22 21 20 25 25 C 1.49964 * 124.61613 * 0.32872 * 12 11 10 26 26 C 1.47338 * 121.37669 * 155.98495 * 9 7 2 27 27 H 0.97002 * 119.99820 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.52256 * 103.05651 * 10 9 7 29 29 H 1.08999 * 109.52111 * 342.87265 * 10 9 7 30 30 H 1.08003 * 118.17335 * 168.99584 * 11 10 9 31 31 H 1.09006 * 109.47402 * 214.99724 * 13 12 11 32 32 H 1.09004 * 109.47463 * 334.99170 * 13 12 11 33 33 H 0.96998 * 119.99289 * 0.02562 * 14 13 12 34 34 H 1.08001 * 125.42651 * 180.16195 * 19 18 17 35 35 H 1.09005 * 115.54527 * 154.37364 * 22 21 20 36 36 H 1.09004 * 117.50027 * 359.97438 * 23 22 21 37 37 H 1.09000 * 117.49999 * 145.02181 * 23 22 21 38 38 H 1.09003 * 117.50064 * 214.98212 * 24 22 21 39 39 H 1.09000 * 117.49992 * 359.97438 * 24 22 21 40 40 H 1.08995 * 109.43781 * 221.06658 * 25 12 11 41 41 H 1.09004 * 109.12988 * 101.67266 * 25 12 11 42 42 H 1.09002 * 109.78070 * 237.79078 * 26 9 7 43 43 H 1.09002 * 109.77840 * 358.60673 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0609 -1.2193 -0.2489 9 7 1.3628 -2.3665 0.3175 10 6 0.1442 -2.3652 1.1398 11 6 0.2243 -3.4823 2.1424 12 6 1.1230 -4.4135 2.1086 13 6 1.0698 -5.4771 3.1748 14 7 0.3296 -6.6368 2.6714 15 6 0.1545 -7.7176 3.4574 16 8 0.6108 -7.7299 4.5854 17 6 -0.5873 -8.8787 2.9534 18 8 -1.1547 -9.0065 1.7314 19 6 -1.7273 -10.2130 1.6736 20 7 -1.5443 -10.8290 2.8107 21 6 -0.8436 -10.0358 3.6276 22 6 -0.4151 -10.3613 5.0353 23 6 -0.6315 -11.7940 5.5262 24 6 -1.5139 -10.6612 6.0567 25 6 2.2100 -4.5114 1.0801 26 6 1.8589 -3.6722 -0.1514 27 1 -0.4850 0.8401 -0.0004 28 1 -0.7267 -2.5110 0.5007 29 1 0.0583 -1.4124 1.6622 30 1 -0.5059 -3.5069 2.9378 31 1 2.0837 -5.7793 3.4375 32 1 0.5684 -5.0815 4.0581 33 1 -0.0338 -6.6271 1.7722 34 1 -2.2603 -10.6129 0.8237 35 1 0.4720 -9.8363 5.3898 36 1 -1.0842 -12.5012 4.8312 37 1 0.1129 -12.2115 6.2041 38 1 -1.3496 -10.3341 7.0834 39 1 -2.5468 -10.6228 5.7107 40 1 2.3355 -5.5525 0.7830 41 1 3.1429 -4.1472 1.5106 42 1 1.0845 -4.1744 -0.7314 43 1 2.7475 -3.5299 -0.7663 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001142623.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:58 Heat of formation + Delta-G solvation = 55.006983 kcal Electronic energy + Delta-G solvation = -25685.402548 eV Core-core repulsion = 21927.327766 eV Total energy + Delta-G solvation = -3758.074782 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.73435 -39.68543 -37.90184 -37.58788 -35.13728 -34.64914 -32.98215 -31.21081 -30.57290 -29.76066 -27.20004 -24.97798 -24.04652 -23.61636 -22.78651 -22.55250 -21.31193 -20.96513 -20.62010 -18.61466 -17.66408 -17.15841 -16.99959 -16.19897 -15.82465 -15.55153 -15.27259 -14.90456 -14.88640 -14.41301 -13.91714 -13.88270 -13.67978 -13.47119 -13.02609 -12.33494 -12.28185 -12.15046 -12.11253 -11.72576 -11.62522 -11.43350 -11.18147 -10.95865 -10.85788 -10.76544 -10.71876 -10.47026 -10.37776 -10.19664 -9.87754 -9.66457 -9.31627 -8.95075 -8.73209 -8.13640 -6.79985 -5.84298 -3.23328 0.55037 2.09144 2.15589 2.54897 2.88446 3.36215 3.38698 3.42089 3.43387 3.62886 3.75818 4.20236 4.45656 4.54963 4.73535 4.81811 5.03891 5.08036 5.20400 5.27141 5.29991 5.34469 5.43080 5.52216 5.58964 5.72415 5.83692 5.87303 5.91049 5.98348 6.01099 6.09969 6.26366 6.28192 6.44561 6.67250 6.81078 7.08932 7.14850 7.18936 7.26678 7.41866 7.66989 7.76485 7.92482 8.33296 9.14688 9.77321 10.35119 11.26236 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.031158 B = 0.002380 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.431933 B =11761.457327 C =12063.457219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.001 4.001 3 Si 0.906 3.094 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.247 4.247 8 H 0.069 0.931 9 N -0.595 5.595 10 C 0.193 3.807 11 C -0.120 4.120 12 C -0.169 4.169 13 C 0.157 3.843 14 N -0.706 5.706 15 C 0.604 3.396 16 O -0.517 6.517 17 C -0.104 4.104 18 O -0.188 6.188 19 C 0.202 3.798 20 N -0.492 5.492 21 C 0.107 3.893 22 C -0.091 4.091 23 C -0.163 4.163 24 C -0.158 4.158 25 C -0.090 4.090 26 C 0.144 3.856 27 H 0.255 0.745 28 H 0.042 0.958 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.407 0.593 34 H 0.257 0.743 35 H 0.139 0.861 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.053 0.947 41 H 0.065 0.935 42 H 0.023 0.977 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.545 -21.081 6.127 22.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.199 4.199 3 Si 0.736 3.264 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.377 4.377 8 H 0.086 0.914 9 N -0.318 5.318 10 C 0.068 3.932 11 C -0.141 4.141 12 C -0.170 4.170 13 C 0.035 3.965 14 N -0.356 5.356 15 C 0.389 3.611 16 O -0.396 6.396 17 C -0.159 4.159 18 O -0.074 6.074 19 C -0.024 4.024 20 N -0.221 5.221 21 C -0.017 4.017 22 C -0.110 4.110 23 C -0.200 4.200 24 C -0.196 4.196 25 C -0.130 4.130 26 C 0.017 3.983 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.242 0.758 34 H 0.273 0.727 35 H 0.157 0.843 36 H 0.122 0.878 37 H 0.117 0.883 38 H 0.120 0.880 39 H 0.113 0.887 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.041 0.959 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.523 -21.427 6.987 22.811 hybrid contribution 0.263 1.468 -0.789 1.687 sum -3.260 -19.959 6.199 21.152 Atomic orbital electron populations 1.69993 1.05188 1.25702 1.54641 1.24993 0.95408 0.98338 1.01133 0.86312 0.78827 0.83184 0.78125 1.20903 1.21608 1.21033 1.19140 0.92227 0.84340 1.41963 0.91368 1.44119 1.29192 1.01211 1.57290 1.19776 0.88864 0.94768 0.89772 1.23325 0.95548 0.96626 0.98609 1.20463 1.00202 0.97278 0.99023 1.20577 0.96242 0.83855 0.95837 1.46140 1.55745 1.15678 1.18021 1.16339 0.79258 0.80461 0.85027 1.90851 1.50142 1.80489 1.18081 1.22932 1.07759 1.00156 0.85078 1.84529 1.54076 1.35908 1.32875 1.28323 0.95964 0.79543 0.98538 1.70239 1.17382 1.32384 1.02068 1.21011 0.95577 0.88919 0.96161 1.20546 1.02268 1.00785 0.87358 1.23003 1.02877 0.90851 1.03240 1.22967 0.95944 1.02482 0.98191 1.20761 0.96667 0.99043 0.96483 1.20952 0.97400 0.87159 0.92759 0.93505 0.94021 0.88768 0.88698 0.91038 0.91116 0.75830 0.72734 0.84287 0.87824 0.88258 0.87959 0.88733 0.92870 0.91665 0.95924 0.92378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.77 11.08 55.49 0.61 -25.16 16 2 C 0.00 -0.02 5.01 -17.43 -0.09 -0.11 16 3 Si 0.91 21.42 29.58 -169.99 -5.03 16.39 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 7 C -0.25 -6.65 9.71 -15.06 -0.15 -6.80 16 8 H 0.07 1.79 7.88 -52.48 -0.41 1.38 16 9 N -0.59 -14.50 3.01 -173.67 -0.52 -15.03 16 10 C 0.19 4.44 5.23 -5.10 -0.03 4.42 16 11 C -0.12 -2.21 9.47 -35.78 -0.34 -2.55 16 12 C -0.17 -2.79 5.23 -101.00 -0.53 -3.31 16 13 C 0.16 2.24 5.66 -5.20 -0.03 2.21 16 14 N -0.71 -9.26 5.54 -62.79 -0.35 -9.61 16 15 C 0.60 8.41 7.79 -12.84 -0.10 8.31 16 16 O -0.52 -8.27 14.87 5.20 0.08 -8.19 16 17 C -0.10 -1.30 7.18 -36.84 -0.26 -1.57 16 18 O -0.19 -1.97 10.57 4.42 0.05 -1.92 16 19 C 0.20 1.63 13.21 52.24 0.69 2.32 16 20 N -0.49 -5.33 10.89 -10.88 -0.12 -5.45 16 21 C 0.11 1.30 6.67 -82.46 -0.55 0.75 16 22 C -0.09 -1.02 5.60 -91.78 -0.51 -1.53 16 23 C -0.16 -1.45 10.15 -26.70 -0.27 -1.72 16 24 C -0.16 -1.48 10.24 -26.70 -0.27 -1.76 16 25 C -0.09 -1.52 5.94 -28.18 -0.17 -1.69 16 26 C 0.14 2.88 6.58 -3.53 -0.02 2.86 16 27 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.09 2.43 6.41 -51.93 -0.33 2.09 16 30 H 0.10 1.56 7.73 -52.48 -0.41 1.15 16 31 H 0.07 1.02 8.11 -51.93 -0.42 0.60 16 32 H 0.07 1.03 7.78 -51.93 -0.40 0.62 16 33 H 0.41 4.93 8.26 -40.82 -0.34 4.60 16 34 H 0.26 0.64 8.06 -52.49 -0.42 0.21 16 35 H 0.14 1.68 6.65 -51.93 -0.35 1.34 16 36 H 0.10 0.96 7.92 -51.93 -0.41 0.55 16 37 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.06 1.14 7.96 -51.93 -0.41 0.72 16 LS Contribution 362.58 15.07 5.46 5.46 Total: -1.00 -31.40 362.58 -8.45 -39.84 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -6.00 Total: 3.82 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -2.63 Total: -0.17 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: -0.37 Total: -55.24 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.12 Total: -10.11 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.40 -8.45 -39.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001142623.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.851 kcal (2) G-P(sol) polarization free energy of solvation -31.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds