Wall clock time and date at job start Tue Mar 31 2020 11:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86807 * 120.00137 * 2 1 4 4 H 1.48495 * 109.46984 * 239.99671 * 3 2 1 5 5 H 1.48500 * 109.46904 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47058 * 119.99430 * 3 2 1 7 7 C 1.38810 * 119.99875 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00327 * 164.52980 * 7 2 1 9 9 N 1.36939 * 120.00352 * 344.52484 * 7 2 1 10 10 C 1.47010 * 121.37262 * 335.97266 * 9 7 2 11 11 C 1.50319 * 109.16396 * 222.96294 * 10 9 7 12 12 C 1.29457 * 123.65117 * 349.28755 * 11 10 9 13 13 C 1.50694 * 117.69284 * 180.57773 * 12 11 10 14 14 N 1.46502 * 109.47861 * 94.99351 * 13 12 11 15 15 C 1.34772 * 120.00569 * 179.97438 * 14 13 12 16 16 O 1.21685 * 119.99875 * 0.02562 * 15 14 13 17 17 C 1.46715 * 120.00131 * 179.97438 * 15 14 13 18 18 O 1.35341 * 126.64418 * 359.69305 * 17 15 14 19 19 C 1.33669 * 107.68532 * 179.83914 * 18 17 15 20 20 N 1.30615 * 109.15262 * 0.43004 * 19 18 17 21 21 C 1.33693 * 108.99749 * 359.73325 * 20 19 18 22 22 C 1.50698 * 126.27218 * 180.02562 * 21 20 19 23 23 C 1.52987 * 117.50148 * 8.70571 * 22 21 20 24 24 C 1.52993 * 117.50018 * 300.03894 * 22 21 20 25 25 C 1.49964 * 124.61613 * 0.32872 * 12 11 10 26 26 C 1.47338 * 121.37669 * 155.98495 * 9 7 2 27 27 H 0.97002 * 119.99820 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.52256 * 103.05651 * 10 9 7 29 29 H 1.08999 * 109.52111 * 342.87265 * 10 9 7 30 30 H 1.08003 * 118.17335 * 168.99584 * 11 10 9 31 31 H 1.09006 * 109.47402 * 214.99724 * 13 12 11 32 32 H 1.09004 * 109.47463 * 334.99170 * 13 12 11 33 33 H 0.96998 * 119.99289 * 0.02562 * 14 13 12 34 34 H 1.08001 * 125.42651 * 180.16195 * 19 18 17 35 35 H 1.09005 * 115.54527 * 154.37364 * 22 21 20 36 36 H 1.09004 * 117.50027 * 359.97438 * 23 22 21 37 37 H 1.09000 * 117.49999 * 145.02181 * 23 22 21 38 38 H 1.09003 * 117.50064 * 214.98212 * 24 22 21 39 39 H 1.09000 * 117.49992 * 359.97438 * 24 22 21 40 40 H 1.08995 * 109.43781 * 221.06658 * 25 12 11 41 41 H 1.09004 * 109.12988 * 101.67266 * 25 12 11 42 42 H 1.09002 * 109.78070 * 237.79078 * 26 9 7 43 43 H 1.09002 * 109.77840 * 358.60673 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1040 1.6963 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6965 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0609 -1.2193 -0.2489 9 7 1.3628 -2.3665 0.3175 10 6 0.1442 -2.3652 1.1398 11 6 0.2243 -3.4823 2.1424 12 6 1.1230 -4.4135 2.1086 13 6 1.0698 -5.4771 3.1748 14 7 0.3296 -6.6368 2.6714 15 6 0.1545 -7.7176 3.4574 16 8 0.6108 -7.7299 4.5854 17 6 -0.5873 -8.8787 2.9534 18 8 -1.1547 -9.0065 1.7314 19 6 -1.7273 -10.2130 1.6736 20 7 -1.5443 -10.8290 2.8107 21 6 -0.8436 -10.0358 3.6276 22 6 -0.4151 -10.3613 5.0353 23 6 -0.6315 -11.7940 5.5262 24 6 -1.5139 -10.6612 6.0567 25 6 2.2100 -4.5114 1.0801 26 6 1.8589 -3.6722 -0.1514 27 1 -0.4850 0.8401 -0.0004 28 1 -0.7267 -2.5110 0.5007 29 1 0.0583 -1.4124 1.6622 30 1 -0.5059 -3.5069 2.9378 31 1 2.0837 -5.7793 3.4375 32 1 0.5684 -5.0815 4.0581 33 1 -0.0338 -6.6271 1.7722 34 1 -2.2603 -10.6129 0.8237 35 1 0.4720 -9.8363 5.3898 36 1 -1.0842 -12.5012 4.8312 37 1 0.1129 -12.2115 6.2041 38 1 -1.3496 -10.3341 7.0834 39 1 -2.5468 -10.6228 5.7107 40 1 2.3355 -5.5525 0.7830 41 1 3.1429 -4.1472 1.5106 42 1 1.0845 -4.1744 -0.7314 43 1 2.7475 -3.5299 -0.7663 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001142623.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:57 Heat of formation + Delta-G solvation = 33.414813 kcal Electronic energy + Delta-G solvation = -25686.338855 eV Core-core repulsion = 21927.327766 eV Total energy + Delta-G solvation = -3759.011088 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.51188 -40.79582 -39.35910 -38.42351 -36.50346 -35.48788 -34.57102 -32.75878 -31.65922 -31.35806 -28.69602 -26.40508 -25.05238 -24.64526 -24.30681 -23.28223 -22.86187 -21.99013 -21.48757 -19.70211 -19.34798 -17.97763 -17.80353 -17.44193 -17.23481 -16.96155 -16.38303 -16.16823 -15.81538 -15.61584 -15.44078 -15.25876 -15.02980 -14.67196 -14.48346 -13.97895 -13.65222 -13.29112 -13.08103 -12.95689 -12.91551 -12.78186 -12.59408 -12.42018 -12.27225 -12.14112 -12.00077 -11.74878 -11.72002 -11.47850 -11.29010 -11.11772 -10.68891 -10.37027 -9.83468 -9.69342 -8.76184 -7.89143 -5.30431 -0.29255 1.06816 1.34311 1.47118 1.48847 1.49834 1.56046 1.89089 2.32420 2.50884 2.92066 3.04568 3.28015 3.45059 3.59171 3.68997 3.85027 3.94279 3.95964 4.09819 4.27496 4.41151 4.41182 4.51431 4.53164 4.63395 4.71456 4.73851 4.82070 4.89484 4.91504 5.06326 5.10531 5.19106 5.20687 5.22083 5.27264 5.38077 5.46789 5.60609 5.73861 6.13630 6.23007 6.33151 6.52474 6.89238 7.12741 7.82623 8.36320 9.19353 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.031158 B = 0.002380 C = 0.002321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.431933 B =11761.457327 C =12063.457219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.054 4.054 3 Si 0.968 3.032 4 H -0.275 1.275 5 H -0.295 1.295 6 H -0.280 1.280 7 C -0.258 4.258 8 H 0.071 0.929 9 N -0.615 5.615 10 C 0.204 3.796 11 C -0.139 4.139 12 C -0.141 4.141 13 C 0.167 3.833 14 N -0.700 5.700 15 C 0.607 3.393 16 O -0.544 6.544 17 C -0.133 4.133 18 O -0.192 6.192 19 C 0.229 3.771 20 N -0.518 5.518 21 C 0.107 3.893 22 C -0.116 4.116 23 C -0.147 4.147 24 C -0.153 4.153 25 C -0.085 4.085 26 C 0.138 3.862 27 H 0.250 0.750 28 H 0.014 0.986 29 H 0.058 0.942 30 H 0.114 0.886 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.413 0.587 34 H 0.309 0.691 35 H 0.125 0.875 36 H 0.101 0.899 37 H 0.117 0.883 38 H 0.114 0.886 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.065 0.935 42 H 0.027 0.973 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.160 -23.255 6.143 24.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.249 4.249 3 Si 0.796 3.204 4 H -0.201 1.201 5 H -0.221 1.221 6 H -0.206 1.206 7 C -0.388 4.388 8 H 0.088 0.912 9 N -0.339 5.339 10 C 0.079 3.921 11 C -0.159 4.159 12 C -0.142 4.142 13 C 0.045 3.955 14 N -0.350 5.350 15 C 0.393 3.607 16 O -0.425 6.425 17 C -0.188 4.188 18 O -0.079 6.079 19 C 0.005 3.995 20 N -0.246 5.246 21 C -0.017 4.017 22 C -0.135 4.135 23 C -0.184 4.184 24 C -0.191 4.191 25 C -0.123 4.123 26 C 0.013 3.987 27 H 0.059 0.941 28 H 0.032 0.968 29 H 0.076 0.924 30 H 0.132 0.868 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.249 0.751 34 H 0.324 0.676 35 H 0.143 0.857 36 H 0.120 0.880 37 H 0.135 0.865 38 H 0.132 0.868 39 H 0.110 0.890 40 H 0.105 0.895 41 H 0.084 0.916 42 H 0.045 0.955 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.126 -23.637 6.995 24.847 hybrid contribution 0.125 1.984 -0.875 2.172 sum -3.001 -21.653 6.120 22.701 Atomic orbital electron populations 1.70156 1.06490 1.25882 1.56083 1.25741 0.96176 1.01345 1.01629 0.85326 0.77511 0.79268 0.78274 1.20067 1.22085 1.20624 1.19480 0.92565 0.85608 1.41118 0.91169 1.44404 1.29391 1.02149 1.57968 1.19417 0.87733 0.94984 0.89977 1.22987 0.97902 0.96145 0.98896 1.20582 0.98439 0.96633 0.98554 1.20376 0.96893 0.83481 0.94770 1.45956 1.55649 1.15174 1.18266 1.16434 0.78892 0.80735 0.84626 1.90831 1.51337 1.81124 1.19162 1.22565 1.09862 1.00065 0.86296 1.84530 1.54373 1.36973 1.31990 1.29596 0.93143 0.78000 0.98775 1.70282 1.18476 1.32839 1.03032 1.21243 0.94951 0.88932 0.96547 1.20572 1.02681 1.02532 0.87699 1.23055 1.02693 0.89776 1.02830 1.23027 0.95355 1.02399 0.98271 1.20698 0.96460 1.00241 0.94921 1.21140 0.97390 0.85776 0.94375 0.94100 0.96798 0.92369 0.86825 0.90353 0.91106 0.75102 0.67632 0.85707 0.88016 0.86524 0.86772 0.89042 0.89504 0.91615 0.95529 0.92180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.98 11.08 21.65 0.24 -54.74 16 2 C -0.05 -3.00 5.01 84.86 0.43 -2.57 16 3 Si 0.97 44.66 29.58 68.60 2.03 46.69 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.29 -13.68 7.11 99.48 0.71 -12.98 16 6 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 7 C -0.26 -14.02 9.71 84.03 0.82 -13.21 16 8 H 0.07 3.70 7.88 -2.91 -0.02 3.67 16 9 N -0.62 -30.36 3.01 -703.36 -2.12 -32.47 16 10 C 0.20 9.70 5.23 85.42 0.45 10.14 16 11 C -0.14 -5.06 9.47 27.10 0.26 -4.81 16 12 C -0.14 -4.44 5.23 -15.14 -0.08 -4.52 16 13 C 0.17 4.46 5.66 85.63 0.48 4.94 16 14 N -0.70 -17.19 5.54 -470.79 -2.61 -19.80 16 15 C 0.61 16.29 7.79 86.46 0.67 16.96 16 16 O -0.54 -17.16 14.87 -4.30 -0.06 -17.22 16 17 C -0.13 -3.17 7.18 24.04 0.17 -3.00 16 18 O -0.19 -3.59 10.57 -7.11 -0.08 -3.66 16 19 C 0.23 2.98 13.21 130.42 1.72 4.70 16 20 N -0.52 -10.12 10.89 -303.12 -3.30 -13.42 16 21 C 0.11 2.48 6.67 41.83 0.28 2.76 16 22 C -0.12 -2.52 5.60 -11.55 -0.06 -2.59 16 23 C -0.15 -2.40 10.15 30.62 0.31 -2.09 16 24 C -0.15 -2.69 10.24 30.62 0.31 -2.37 16 25 C -0.08 -2.65 5.94 29.65 0.18 -2.48 16 26 C 0.14 5.42 6.58 86.25 0.57 5.99 16 27 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 28 H 0.01 0.73 8.14 -2.38 -0.02 0.71 16 29 H 0.06 3.15 6.41 -2.39 -0.02 3.13 16 30 H 0.11 3.68 7.73 -2.91 -0.02 3.66 16 31 H 0.08 2.05 8.11 -2.38 -0.02 2.03 16 32 H 0.07 1.94 7.78 -2.39 -0.02 1.92 16 33 H 0.41 9.19 8.26 -92.71 -0.77 8.42 16 34 H 0.31 0.03 8.06 -2.91 -0.02 0.01 16 35 H 0.13 3.05 6.65 -2.38 -0.02 3.03 16 36 H 0.10 1.71 7.92 -2.38 -0.02 1.70 16 37 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.07 2.12 8.14 -2.38 -0.02 2.11 16 42 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.06 2.29 7.96 -2.39 -0.02 2.27 16 Total: -1.00 -69.97 362.58 0.88 -69.09 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: 0.27 Total: 17.65 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: 6.50 Total: 7.88 kcal Atomic # 7 Polarization: -112.64 SS G_CDS: -7.79 Total: -120.43 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.14 Total: -20.89 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -69.97 0.88 -69.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001142623.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.509 kcal (2) G-P(sol) polarization free energy of solvation -69.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds