Wall clock time and date at job start Tue Mar 31 2020 11:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 119.99888 * 2 1 4 4 H 1.48503 * 109.47345 * 270.00107 * 3 2 1 5 5 H 1.48496 * 109.47361 * 29.99794 * 3 2 1 6 6 H 1.48503 * 109.47179 * 150.00187 * 3 2 1 7 7 C 1.38814 * 120.00327 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00566 * 196.37947 * 7 2 1 9 9 N 1.36937 * 119.99704 * 16.37279 * 7 2 1 10 10 C 1.48369 * 120.34638 * 25.08450 * 9 7 2 11 11 C 1.53888 * 107.41339 * 133.12897 * 10 9 7 12 12 H 1.09003 * 112.09108 * 181.86246 * 11 10 9 13 13 C 1.54543 * 107.82656 * 305.82341 * 11 10 9 14 14 C 1.54278 * 104.94019 * 89.62997 * 13 11 10 15 15 C 1.54800 * 104.73520 * 0.08062 * 14 13 11 16 16 H 1.08996 * 112.68720 * 146.63816 * 15 14 13 17 17 C 1.47165 * 120.70911 * 204.90196 * 9 7 2 18 18 N 1.48306 * 107.74895 * 57.93844 * 11 10 9 19 19 C 1.34781 * 128.07295 * 106.47793 * 18 11 10 20 20 O 1.21681 * 120.00641 * 356.73908 * 19 18 11 21 21 C 1.46723 * 119.99568 * 176.74139 * 19 18 11 22 22 C 1.36341 * 126.64368 * 18.79322 * 21 19 18 23 23 N 1.33697 * 107.45212 * 179.90108 * 22 21 19 24 24 C 1.30623 * 108.99159 * 0.37281 * 23 22 21 25 25 C 1.50702 * 125.41986 * 179.78486 * 24 23 22 26 26 C 1.53004 * 117.50011 * 8.72917 * 25 24 23 27 27 C 1.53000 * 117.50301 * 300.06637 * 25 24 23 28 28 O 1.33663 * 109.15724 * 359.76944 * 24 23 22 29 29 H 0.96998 * 120.00549 * 359.97438 * 1 2 3 30 30 H 1.08997 * 110.61808 * 13.36833 * 10 9 7 31 31 H 1.09002 * 109.49279 * 252.25184 * 10 9 7 32 32 H 1.09004 * 110.36077 * 208.52096 * 13 11 10 33 33 H 1.08988 * 110.36719 * 330.72792 * 13 11 10 34 34 H 1.09003 * 110.36954 * 118.90085 * 14 13 11 35 35 H 1.09004 * 110.36085 * 241.21065 * 14 13 11 36 36 H 1.08996 * 109.74959 * 107.64132 * 17 9 7 37 37 H 1.08995 * 109.79018 * 346.92468 * 17 9 7 38 38 H 1.07998 * 126.27927 * 0.02562 * 22 21 19 39 39 H 1.08995 * 115.54816 * 154.39131 * 25 24 23 40 40 H 1.09004 * 117.49497 * 359.97438 * 26 25 24 41 41 H 1.08998 * 117.50091 * 145.01960 * 26 25 24 42 42 H 1.08996 * 117.49888 * 214.98327 * 27 25 24 43 43 H 1.09001 * 117.49621 * 359.97275 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0574 -1.2213 0.2632 9 7 1.3673 -2.3638 -0.3354 10 6 0.1639 -2.3314 -1.2026 11 6 0.3432 -3.4155 -2.2799 12 1 -0.4894 -3.4363 -2.9832 13 6 1.6957 -3.1638 -2.9839 14 6 2.7264 -3.9677 -2.1643 15 6 1.8999 -4.6350 -1.0382 16 1 2.2878 -5.6135 -0.7555 17 6 1.8581 -3.6623 0.1535 18 7 0.5248 -4.7147 -1.5880 19 6 -0.3547 -5.7307 -1.4834 20 8 -1.4747 -5.6160 -1.9449 21 6 0.0385 -6.9750 -0.8127 22 6 1.0836 -7.1409 0.0470 23 7 1.0884 -8.4219 0.4299 24 6 0.1037 -9.0455 -0.1597 25 6 -0.2287 -10.5061 0.0053 26 6 0.5222 -11.2836 1.0881 27 6 0.8436 -11.5237 -0.3892 28 8 -0.5624 -8.1818 -0.9324 29 1 -0.4851 0.8400 0.0004 30 1 0.0583 -1.3554 -1.6762 31 1 -0.7213 -2.5490 -0.6048 32 1 1.6619 -3.5268 -4.0112 33 1 1.9412 -2.1021 -2.9654 34 1 3.1995 -4.7257 -2.7885 35 1 3.4776 -3.3008 -1.7410 36 1 1.1838 -4.0464 0.9189 37 1 2.8589 -3.5458 0.5691 38 1 1.7789 -6.3772 0.3627 39 1 -1.2691 -10.7750 -0.1773 40 1 1.2570 -10.7387 1.6809 41 1 -0.0240 -12.0643 1.6175 42 1 0.5087 -12.4621 -0.8310 43 1 1.7894 -11.1367 -0.7684 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001017624106.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:47 Heat of formation + Delta-G solvation = 74.426458 kcal Electronic energy + Delta-G solvation = -27269.768231 eV Core-core repulsion = 23512.535541 eV Total energy + Delta-G solvation = -3757.232690 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.48072 -40.21281 -37.88215 -37.48104 -34.94830 -34.13262 -31.91005 -31.35586 -30.45246 -29.67683 -26.50845 -25.08820 -23.89758 -23.64816 -22.83874 -22.53436 -21.26460 -20.69795 -20.31371 -18.80693 -17.69849 -17.33875 -16.81151 -16.30293 -15.75256 -15.32986 -15.02412 -14.95623 -14.60166 -14.23406 -13.68053 -13.49121 -13.19689 -12.94040 -12.75198 -12.65100 -12.13610 -11.98642 -11.92602 -11.66413 -11.64996 -11.19662 -11.13698 -11.05300 -10.91982 -10.85348 -10.59944 -10.54440 -10.42900 -10.05908 -9.93384 -9.82358 -9.74588 -8.89782 -8.62001 -8.39132 -6.82034 -5.87319 -3.29815 0.84074 2.02565 2.28072 3.22779 3.31759 3.32674 3.39551 3.41209 3.45000 3.88038 4.34197 4.39315 4.43822 4.54965 4.69242 4.79669 4.93172 5.08836 5.22577 5.25992 5.29180 5.33714 5.44816 5.52562 5.53289 5.63801 5.66663 5.73114 5.79009 5.95742 6.04345 6.08357 6.22171 6.29677 6.31728 6.48509 6.51061 6.63083 6.84851 7.18926 7.45810 7.48746 7.67794 7.80398 8.25688 8.28249 9.05651 9.69518 10.25367 11.21163 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.026544 B = 0.003312 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.601279 B = 8452.833093 C = 8683.036457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.003 3.997 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.070 0.930 9 N -0.589 5.589 10 C 0.173 3.827 11 C 0.111 3.889 12 H 0.092 0.908 13 C -0.113 4.113 14 C -0.109 4.109 15 C 0.086 3.914 16 H 0.097 0.903 17 C 0.137 3.863 18 N -0.587 5.587 19 C 0.613 3.387 20 O -0.534 6.534 21 C -0.079 4.079 22 C 0.008 3.992 23 N -0.483 5.483 24 C 0.233 3.767 25 C -0.084 4.084 26 C -0.144 4.144 27 C -0.154 4.154 28 O -0.168 6.168 29 H 0.256 0.744 30 H 0.099 0.901 31 H 0.028 0.972 32 H 0.053 0.947 33 H 0.091 0.909 34 H 0.055 0.945 35 H 0.087 0.913 36 H 0.021 0.979 37 H 0.069 0.931 38 H 0.205 0.795 39 H 0.136 0.864 40 H 0.113 0.887 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.352 -18.428 -2.341 19.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.734 3.266 4 H -0.214 1.214 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.384 4.384 8 H 0.088 0.912 9 N -0.312 5.312 10 C 0.047 3.953 11 C 0.008 3.992 12 H 0.110 0.890 13 C -0.151 4.151 14 C -0.147 4.147 15 C -0.019 4.019 16 H 0.115 0.885 17 C 0.009 3.991 18 N -0.320 5.320 19 C 0.400 3.600 20 O -0.413 6.413 21 C -0.135 4.135 22 C -0.134 4.134 23 N -0.212 5.212 24 C 0.028 3.972 25 C -0.103 4.103 26 C -0.181 4.181 27 C -0.192 4.192 28 O -0.052 6.052 29 H 0.066 0.934 30 H 0.117 0.883 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.109 0.891 34 H 0.074 0.926 35 H 0.105 0.895 36 H 0.039 0.961 37 H 0.087 0.913 38 H 0.222 0.778 39 H 0.153 0.847 40 H 0.131 0.869 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.921 -18.576 -2.180 19.110 hybrid contribution -0.201 1.307 -0.309 1.358 sum 3.721 -17.269 -2.489 17.839 Atomic orbital electron populations 1.70016 1.05228 1.25735 1.53762 1.25022 0.95304 0.98406 1.00819 0.86262 0.79007 0.83599 0.77702 1.21386 1.21813 1.20463 1.19185 0.92473 0.84340 1.42364 0.91200 1.44354 1.31263 1.00722 1.54876 1.21568 0.88605 0.95849 0.89271 1.23364 0.98024 0.81834 0.95960 0.89019 1.22344 0.93813 1.02048 0.96910 1.22329 0.97872 0.98594 0.95919 1.23653 0.81451 0.99649 0.97101 0.88525 1.21469 0.98665 0.87099 0.91865 1.48796 1.14705 1.15560 1.52959 1.15716 0.84340 0.80142 0.79850 1.90844 1.19440 1.81631 1.49363 1.22853 0.97808 0.86401 1.06476 1.24260 0.98023 0.94106 0.96996 1.70288 1.20645 1.05701 1.24523 1.25369 0.88694 0.93488 0.89654 1.20123 0.99681 0.81406 1.09134 1.23131 1.02220 1.00936 0.91836 1.23155 0.98827 0.98745 0.98434 1.84448 1.49304 1.17231 1.54262 0.93414 0.88315 0.95348 0.92821 0.89092 0.92628 0.89472 0.96093 0.91262 0.77848 0.84662 0.86884 0.87352 0.87314 0.87884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.16 11.05 55.49 0.61 -24.55 16 2 C 0.00 0.09 4.97 -17.43 -0.09 0.00 16 3 Si 0.90 20.64 29.58 -169.99 -5.03 15.61 16 4 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.25 -6.37 9.65 -15.06 -0.15 -6.51 16 8 H 0.07 1.70 7.87 -52.49 -0.41 1.29 16 9 N -0.59 -13.41 2.31 -170.10 -0.39 -13.80 16 10 C 0.17 3.96 4.63 -2.55 -0.01 3.95 16 11 C 0.11 2.11 4.07 -65.66 -0.27 1.84 16 12 H 0.09 1.75 7.95 -51.93 -0.41 1.33 16 13 C -0.11 -1.85 6.17 -25.25 -0.16 -2.01 16 14 C -0.11 -1.62 6.20 -25.11 -0.16 -1.78 16 15 C 0.09 1.35 3.25 -65.52 -0.21 1.14 16 16 H 0.10 1.28 4.49 -51.93 -0.23 1.05 16 17 C 0.14 2.55 5.85 -3.22 -0.02 2.54 16 18 N -0.59 -10.71 2.76 -154.38 -0.43 -11.14 16 19 C 0.61 12.01 7.88 -12.83 -0.10 11.91 16 20 O -0.53 -12.21 17.44 3.39 0.06 -12.15 16 21 C -0.08 -1.36 7.13 -36.84 -0.26 -1.62 16 22 C 0.01 0.12 10.22 -17.42 -0.18 -0.05 16 23 N -0.48 -6.96 10.79 -10.80 -0.12 -7.08 16 24 C 0.23 3.19 7.87 -12.79 -0.10 3.09 16 25 C -0.08 -0.78 6.33 -91.77 -0.58 -1.36 16 26 C -0.14 -1.03 10.13 -26.69 -0.27 -1.30 16 27 C -0.15 -1.07 10.24 -26.69 -0.27 -1.34 16 28 O -0.17 -2.79 10.79 2.60 0.03 -2.76 16 29 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.10 2.47 6.30 -51.93 -0.33 2.14 16 31 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.09 1.62 7.83 -51.94 -0.41 1.22 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.09 1.34 7.84 -51.93 -0.41 0.93 16 36 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 1.19 7.96 -51.93 -0.41 0.78 16 38 H 0.21 2.69 5.09 -52.49 -0.27 2.42 16 39 H 0.14 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.11 0.96 7.87 -51.93 -0.41 0.55 16 41 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 347.29 15.07 5.23 5.23 Total: -1.00 -31.45 347.29 -8.66 -40.10 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -5.81 Total: 2.05 kcal Atomic # 6 Polarization: 11.30 SS G_CDS: -2.82 Total: 8.48 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: -0.32 Total: -56.57 kcal Atomic # 8 Polarization: -15.00 SS G_CDS: 0.09 Total: -14.91 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.03 Total: 15.61 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.45 -8.66 -40.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017624106.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.531 kcal (2) G-P(sol) polarization free energy of solvation -31.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds