Wall clock time and date at job start Tue Mar 31 2020 11:02:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86797 * 119.99888 * 2 1 4 4 H 1.48503 * 109.47345 * 270.00107 * 3 2 1 5 5 H 1.48496 * 109.47361 * 29.99794 * 3 2 1 6 6 H 1.48503 * 109.47179 * 150.00187 * 3 2 1 7 7 C 1.38814 * 120.00327 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00566 * 196.37947 * 7 2 1 9 9 N 1.36937 * 119.99704 * 16.37279 * 7 2 1 10 10 C 1.48369 * 120.34638 * 25.08450 * 9 7 2 11 11 C 1.53888 * 107.41339 * 133.12897 * 10 9 7 12 12 H 1.09003 * 112.09108 * 181.86246 * 11 10 9 13 13 C 1.54543 * 107.82656 * 305.82341 * 11 10 9 14 14 C 1.54278 * 104.94019 * 89.62997 * 13 11 10 15 15 C 1.54800 * 104.73520 * 0.08062 * 14 13 11 16 16 H 1.08996 * 112.68720 * 146.63816 * 15 14 13 17 17 C 1.47165 * 120.70911 * 204.90196 * 9 7 2 18 18 N 1.48306 * 107.74895 * 57.93844 * 11 10 9 19 19 C 1.34781 * 128.07295 * 106.47793 * 18 11 10 20 20 O 1.21681 * 120.00641 * 356.73908 * 19 18 11 21 21 C 1.46723 * 119.99568 * 176.74139 * 19 18 11 22 22 C 1.36341 * 126.64368 * 18.79322 * 21 19 18 23 23 N 1.33697 * 107.45212 * 179.90108 * 22 21 19 24 24 C 1.30623 * 108.99159 * 0.37281 * 23 22 21 25 25 C 1.50702 * 125.41986 * 179.78486 * 24 23 22 26 26 C 1.53004 * 117.50011 * 8.72917 * 25 24 23 27 27 C 1.53000 * 117.50301 * 300.06637 * 25 24 23 28 28 O 1.33663 * 109.15724 * 359.76944 * 24 23 22 29 29 H 0.96998 * 120.00549 * 359.97438 * 1 2 3 30 30 H 1.08997 * 110.61808 * 13.36833 * 10 9 7 31 31 H 1.09002 * 109.49279 * 252.25184 * 10 9 7 32 32 H 1.09004 * 110.36077 * 208.52096 * 13 11 10 33 33 H 1.08988 * 110.36719 * 330.72792 * 13 11 10 34 34 H 1.09003 * 110.36954 * 118.90085 * 14 13 11 35 35 H 1.09004 * 110.36085 * 241.21065 * 14 13 11 36 36 H 1.08996 * 109.74959 * 107.64132 * 17 9 7 37 37 H 1.08995 * 109.79018 * 346.92468 * 17 9 7 38 38 H 1.07998 * 126.27927 * 0.02562 * 22 21 19 39 39 H 1.08995 * 115.54816 * 154.39131 * 25 24 23 40 40 H 1.09004 * 117.49497 * 359.97438 * 26 25 24 41 41 H 1.08998 * 117.50091 * 145.01960 * 26 25 24 42 42 H 1.08996 * 117.49888 * 214.98327 * 27 25 24 43 43 H 1.09001 * 117.49621 * 359.97275 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0574 -1.2213 0.2632 9 7 1.3673 -2.3638 -0.3354 10 6 0.1639 -2.3314 -1.2026 11 6 0.3432 -3.4155 -2.2799 12 1 -0.4894 -3.4363 -2.9832 13 6 1.6957 -3.1638 -2.9839 14 6 2.7264 -3.9677 -2.1643 15 6 1.8999 -4.6350 -1.0382 16 1 2.2878 -5.6135 -0.7555 17 6 1.8581 -3.6623 0.1535 18 7 0.5248 -4.7147 -1.5880 19 6 -0.3547 -5.7307 -1.4834 20 8 -1.4747 -5.6160 -1.9449 21 6 0.0385 -6.9750 -0.8127 22 6 1.0836 -7.1409 0.0470 23 7 1.0884 -8.4219 0.4299 24 6 0.1037 -9.0455 -0.1597 25 6 -0.2287 -10.5061 0.0053 26 6 0.5222 -11.2836 1.0881 27 6 0.8436 -11.5237 -0.3892 28 8 -0.5624 -8.1818 -0.9324 29 1 -0.4851 0.8400 0.0004 30 1 0.0583 -1.3554 -1.6762 31 1 -0.7213 -2.5490 -0.6048 32 1 1.6619 -3.5268 -4.0112 33 1 1.9412 -2.1021 -2.9654 34 1 3.1995 -4.7257 -2.7885 35 1 3.4776 -3.3008 -1.7410 36 1 1.1838 -4.0464 0.9189 37 1 2.8589 -3.5458 0.5691 38 1 1.7789 -6.3772 0.3627 39 1 -1.2691 -10.7750 -0.1773 40 1 1.2570 -10.7387 1.6809 41 1 -0.0240 -12.0643 1.6175 42 1 0.5087 -12.4621 -0.8310 43 1 1.7894 -11.1367 -0.7684 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001017624106.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:02:46 Heat of formation + Delta-G solvation = 53.703388 kcal Electronic energy + Delta-G solvation = -27270.666851 eV Core-core repulsion = 23512.535541 eV Total energy + Delta-G solvation = -3758.131310 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.66217 -41.70996 -39.37209 -38.23722 -36.24724 -35.81375 -33.35363 -33.06475 -32.05386 -30.94399 -28.23152 -26.29962 -25.40560 -24.99880 -24.12017 -23.27424 -22.70730 -21.79194 -21.61905 -20.33192 -19.25226 -18.38991 -18.12923 -17.87282 -17.13515 -16.92508 -16.37167 -16.10642 -15.76059 -15.53827 -15.29611 -15.00678 -14.88423 -14.51541 -14.16947 -13.68512 -13.53873 -13.32370 -13.24861 -12.90243 -12.81683 -12.69650 -12.42853 -12.27138 -12.18898 -12.12154 -12.07485 -11.90279 -11.74937 -11.57900 -11.55601 -11.33233 -11.18584 -10.59415 -10.16262 -9.87702 -8.72480 -7.85227 -5.30086 -0.39484 0.80407 1.14709 1.50917 1.52469 1.60522 1.78946 2.09252 2.52462 2.69382 2.89455 3.21987 3.31743 3.43066 3.56901 3.72196 3.74886 3.78854 3.94783 3.98772 4.04629 4.11633 4.25252 4.36124 4.40975 4.48937 4.64213 4.78445 4.79153 4.80932 4.87443 4.95777 4.97367 5.05694 5.09365 5.12311 5.18867 5.26250 5.34142 5.53194 5.54871 5.68321 6.28832 6.32215 6.35607 6.78173 7.08635 7.78903 8.33113 9.21954 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.026544 B = 0.003312 C = 0.003224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.601279 B = 8452.833093 C = 8683.036457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.054 4.054 3 Si 0.967 3.033 4 H -0.285 1.285 5 H -0.306 1.306 6 H -0.264 1.264 7 C -0.248 4.248 8 H 0.084 0.916 9 N -0.600 5.600 10 C 0.187 3.813 11 C 0.113 3.887 12 H 0.084 0.916 13 C -0.105 4.105 14 C -0.102 4.102 15 C 0.095 3.905 16 H 0.131 0.869 17 C 0.131 3.869 18 N -0.587 5.587 19 C 0.610 3.390 20 O -0.582 6.582 21 C -0.116 4.116 22 C 0.034 3.966 23 N -0.495 5.495 24 C 0.249 3.751 25 C -0.113 4.113 26 C -0.133 4.133 27 C -0.137 4.137 28 O -0.187 6.187 29 H 0.247 0.753 30 H 0.072 0.928 31 H -0.021 1.021 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.006 0.994 37 H 0.093 0.907 38 H 0.222 0.778 39 H 0.153 0.847 40 H 0.099 0.901 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.218 -21.273 -2.333 22.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.249 4.249 3 Si 0.796 3.204 4 H -0.212 1.212 5 H -0.234 1.234 6 H -0.189 1.189 7 C -0.378 4.378 8 H 0.102 0.898 9 N -0.323 5.323 10 C 0.061 3.939 11 C 0.010 3.990 12 H 0.102 0.898 13 C -0.143 4.143 14 C -0.140 4.140 15 C -0.008 4.008 16 H 0.149 0.851 17 C 0.005 3.995 18 N -0.318 5.318 19 C 0.399 3.601 20 O -0.464 6.464 21 C -0.171 4.171 22 C -0.108 4.108 23 N -0.224 5.224 24 C 0.045 3.955 25 C -0.132 4.132 26 C -0.170 4.170 27 C -0.174 4.174 28 O -0.074 6.074 29 H 0.056 0.944 30 H 0.090 0.910 31 H -0.003 1.003 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.024 0.976 37 H 0.111 0.889 38 H 0.238 0.762 39 H 0.170 0.830 40 H 0.118 0.882 41 H 0.154 0.846 42 H 0.156 0.844 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.860 -21.450 -2.158 22.623 hybrid contribution -1.106 2.029 -0.209 2.321 sum 5.754 -19.421 -2.367 20.393 Atomic orbital electron populations 1.70205 1.06903 1.25707 1.56254 1.25768 0.95848 1.01553 1.01716 0.85256 0.78041 0.79577 0.77489 1.21163 1.23351 1.18881 1.19595 0.93027 0.84993 1.40170 0.89831 1.44544 1.30740 1.01901 1.55159 1.21173 0.87242 0.95914 0.89604 1.23128 0.99871 0.81273 0.94737 0.89771 1.22274 0.92184 1.01560 0.98310 1.22355 0.97054 0.99094 0.95471 1.23713 0.80374 1.00535 0.96165 0.85143 1.21690 0.99174 0.85768 0.92895 1.48831 1.15530 1.14833 1.52623 1.16072 0.83712 0.81080 0.79225 1.90802 1.21324 1.82691 1.51580 1.22383 0.99709 0.86150 1.08884 1.24480 0.96741 0.94653 0.94937 1.70383 1.21430 1.05360 1.25210 1.26465 0.87187 0.94681 0.87193 1.20591 1.01499 0.79156 1.11970 1.23257 1.01328 1.00479 0.91893 1.23292 0.97287 0.98546 0.98303 1.84443 1.50174 1.17443 1.55297 0.94352 0.91026 1.00288 0.90259 0.90744 0.89153 0.89323 0.97583 0.88907 0.76219 0.82951 0.88218 0.84562 0.84426 0.88735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.11 11.05 21.65 0.24 -54.87 16 2 C -0.05 -2.88 4.97 84.86 0.42 -2.46 16 3 Si 0.97 42.99 29.58 68.60 2.03 45.02 16 4 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 5 H -0.31 -14.22 7.11 99.48 0.71 -13.51 16 6 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 7 C -0.25 -12.38 9.65 84.03 0.81 -11.57 16 8 H 0.08 3.90 7.87 -2.91 -0.02 3.88 16 9 N -0.60 -27.60 2.31 -692.06 -1.60 -29.20 16 10 C 0.19 9.05 4.63 86.32 0.40 9.45 16 11 C 0.11 4.42 4.07 45.47 0.18 4.61 16 12 H 0.08 3.38 7.95 -2.39 -0.02 3.36 16 13 C -0.10 -3.30 6.17 31.55 0.19 -3.11 16 14 C -0.10 -2.69 6.20 31.64 0.20 -2.50 16 15 C 0.10 2.79 3.25 45.56 0.15 2.94 16 16 H 0.13 2.99 4.49 -2.39 -0.01 2.98 16 17 C 0.13 4.74 5.85 86.55 0.51 5.25 16 18 N -0.59 -21.39 2.76 -760.57 -2.10 -23.48 16 19 C 0.61 24.42 7.88 86.46 0.68 25.10 16 20 O -0.58 -27.91 17.44 -2.55 -0.04 -27.95 16 21 C -0.12 -3.95 7.13 24.05 0.17 -3.78 16 22 C 0.03 0.96 10.22 83.97 0.86 1.82 16 23 N -0.50 -13.31 10.79 -302.87 -3.27 -16.58 16 24 C 0.25 6.42 7.87 88.29 0.69 7.12 16 25 C -0.11 -1.79 6.33 -11.54 -0.07 -1.86 16 26 C -0.13 -1.46 10.13 30.62 0.31 -1.15 16 27 C -0.14 -1.42 10.24 30.62 0.31 -1.11 16 28 O -0.19 -6.16 10.79 -5.37 -0.06 -6.22 16 29 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 30 H 0.07 3.83 6.30 -2.39 -0.02 3.82 16 31 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16 32 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.07 2.61 7.83 -2.39 -0.02 2.59 16 34 H 0.09 1.85 8.14 -2.39 -0.02 1.84 16 35 H 0.09 2.39 7.84 -2.39 -0.02 2.37 16 36 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 37 H 0.09 2.94 7.96 -2.39 -0.02 2.92 16 38 H 0.22 5.20 5.09 -2.91 -0.01 5.19 16 39 H 0.15 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.10 1.42 7.87 -2.39 -0.02 1.40 16 41 H 0.14 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.14 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -72.79 347.29 2.06 -70.73 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 1.04 Total: 13.81 kcal Atomic # 6 Polarization: 22.94 SS G_CDS: 5.82 Total: 28.76 kcal Atomic # 7 Polarization: -117.41 SS G_CDS: -6.72 Total: -124.13 kcal Atomic # 8 Polarization: -34.07 SS G_CDS: -0.10 Total: -34.17 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -72.79 2.06 -70.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017624106.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.430 kcal (2) G-P(sol) polarization free energy of solvation -72.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds