Wall clock time and date at job start Tue Mar 31 2020 11:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86807 * 119.99719 * 2 1 4 4 H 1.48496 * 109.47214 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46666 * 299.99679 * 3 2 1 6 6 H 1.48491 * 109.47210 * 59.99458 * 3 2 1 7 7 C 1.38810 * 120.00574 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00152 * 195.10514 * 7 2 1 9 9 N 1.36939 * 119.99928 * 15.10119 * 7 2 1 10 10 C 1.48371 * 120.34060 * 25.34873 * 9 7 2 11 11 C 1.53884 * 107.40818 * 133.13488 * 10 9 7 12 12 H 1.09000 * 112.09813 * 181.86445 * 11 10 9 13 13 C 1.54548 * 107.83156 * 305.82803 * 11 10 9 14 14 C 1.54277 * 104.94889 * 89.62227 * 13 11 10 15 15 C 1.54800 * 104.72675 * 0.08943 * 14 13 11 16 16 H 1.08999 * 112.68812 * 146.63529 * 15 14 13 17 17 C 1.47157 * 120.70833 * 205.17400 * 9 7 2 18 18 N 1.48311 * 104.40244 * 24.61933 * 15 14 13 19 19 C 1.34778 * 128.07766 * 139.12067 * 18 15 14 20 20 O 1.21493 * 119.99880 * 180.02562 * 19 18 15 21 21 C 1.48331 * 119.99947 * 359.97438 * 19 18 15 22 22 C 1.42268 * 126.93575 * 179.70687 * 21 19 18 23 23 C 1.35319 * 103.91803 * 179.88840 * 22 21 19 24 24 C 1.50700 * 126.66279 * 180.02562 * 23 22 21 25 25 C 1.52994 * 117.49915 * 188.94573 * 24 23 22 26 26 C 1.52990 * 60.00419 * 252.51105 * 25 24 23 27 27 O 1.34008 * 106.66847 * 0.37594 * 23 22 21 28 28 N 1.20898 * 111.85118 * 359.74352 * 27 23 22 29 29 H 0.96997 * 120.00148 * 0.02562 * 1 2 3 30 30 H 1.08994 * 110.61799 * 13.37647 * 10 9 7 31 31 H 1.08999 * 109.49508 * 252.25170 * 10 9 7 32 32 H 1.09002 * 110.36427 * 208.52512 * 13 11 10 33 33 H 1.09009 * 110.35811 * 330.72585 * 13 11 10 34 34 H 1.08997 * 110.36115 * 118.90046 * 14 13 11 35 35 H 1.08992 * 110.36628 * 241.22258 * 14 13 11 36 36 H 1.09010 * 109.75236 * 107.63362 * 17 9 7 37 37 H 1.09001 * 109.79729 * 346.92323 * 17 9 7 38 38 H 1.07996 * 128.04374 * 0.02768 * 22 21 19 39 39 H 1.09005 * 115.55319 * 334.66116 * 24 23 22 40 40 H 1.09003 * 117.50057 * 0.02562 * 25 24 23 41 41 H 1.09001 * 117.50380 * 145.02265 * 25 24 23 42 42 H 1.08998 * 117.50831 * 252.50810 * 26 25 24 43 43 H 1.09001 * 117.51898 * 107.47682 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 0.0006 5 1 1.8913 2.3964 -1.2126 6 1 1.8913 2.3966 1.2124 7 6 2.0104 -1.2021 0.0005 8 1 3.0624 -1.2180 0.2443 9 7 1.3612 -2.3677 -0.3079 10 6 0.1447 -2.3460 -1.1570 11 6 0.3065 -3.4456 -2.2214 12 1 -0.5365 -3.4754 -2.9116 13 6 1.6485 -3.2058 -2.9494 14 6 2.6909 -3.9989 -2.1342 15 6 1.8809 -4.6491 -0.9864 16 1 2.2720 -5.6240 -0.6955 17 6 1.8582 -3.6595 0.1919 18 7 0.4974 -4.7351 -1.5139 19 6 -0.3813 -5.7484 -1.3813 20 8 -1.4865 -5.6630 -1.8784 21 6 0.0016 -6.9684 -0.6294 22 6 -0.8053 -8.1164 -0.3948 23 6 -0.0049 -8.9348 0.3269 24 6 -0.3560 -10.3031 0.8519 25 6 0.6285 -10.9622 1.8200 26 6 0.5030 -11.4804 0.3860 27 8 1.1578 -8.2889 0.4905 28 7 1.1487 -7.2038 -0.0424 29 1 -0.4850 0.8400 -0.0004 30 1 0.0330 -1.3768 -1.6429 31 1 -0.7314 -2.5541 -0.5428 32 1 1.5987 -3.5832 -3.9708 33 1 1.8953 -2.1440 -2.9497 34 1 3.1536 -4.7663 -2.7547 35 1 3.4490 -3.3270 -1.7319 36 1 1.1953 -4.0320 0.9730 37 1 2.8654 -3.5384 0.5906 38 1 -1.8198 -8.2945 -0.7193 39 1 -1.4185 -10.4872 1.0111 40 1 1.5299 -10.4061 2.0774 41 1 0.2138 -11.5801 2.6165 42 1 0.0057 -12.4391 0.2388 43 1 1.3217 -11.2653 -0.3007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001017776884.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:40 Heat of formation + Delta-G solvation = 102.700658 kcal Electronic energy + Delta-G solvation = -27258.321119 eV Core-core repulsion = 23502.314490 eV Total energy + Delta-G solvation = -3756.006629 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.08704 -40.06700 -37.79956 -37.71536 -34.14871 -33.90931 -31.86695 -31.20486 -30.73199 -30.26582 -26.41127 -25.04692 -23.91147 -23.60841 -23.03244 -22.72854 -22.04898 -20.40974 -19.92680 -18.27663 -17.75562 -17.39878 -17.14753 -16.23141 -15.81822 -15.29878 -15.10371 -14.61966 -14.44044 -14.33685 -13.63397 -13.42748 -13.09660 -12.89841 -12.84921 -12.62616 -12.19698 -11.97334 -11.93627 -11.62628 -11.55812 -11.42658 -11.12396 -10.87937 -10.84633 -10.49787 -10.45974 -10.40699 -10.31389 -9.99152 -9.88131 -9.74874 -9.64752 -9.32233 -8.56866 -8.27998 -6.72803 -5.80916 -3.23341 1.13837 1.63991 2.76307 3.11496 3.34880 3.41944 3.43134 3.44728 3.47774 4.01391 4.10152 4.38181 4.45552 4.52070 4.74514 5.00764 5.08889 5.15250 5.22981 5.24858 5.35048 5.39416 5.41727 5.46968 5.58714 5.63144 5.70138 5.79155 5.81485 5.88721 6.12707 6.24017 6.36116 6.40870 6.42505 6.58470 6.64089 6.79135 6.96035 7.26939 7.54323 7.73627 7.93501 8.02741 8.33484 8.41404 9.13065 9.76719 10.33684 11.27477 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024641 B = 0.003359 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.028744 B = 8333.123775 C = 8593.424950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.001 3.999 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.291 1.291 7 C -0.249 4.249 8 H 0.069 0.931 9 N -0.591 5.591 10 C 0.175 3.825 11 C 0.105 3.895 12 H 0.090 0.910 13 C -0.112 4.112 14 C -0.110 4.110 15 C 0.100 3.900 16 H 0.105 0.895 17 C 0.143 3.857 18 N -0.588 5.588 19 C 0.607 3.393 20 O -0.539 6.539 21 C -0.008 4.008 22 C -0.176 4.176 23 C -0.009 4.009 24 C -0.084 4.084 25 C -0.166 4.166 26 C -0.163 4.163 27 O 0.116 5.884 28 N -0.325 5.325 29 H 0.254 0.746 30 H 0.098 0.902 31 H 0.025 0.975 32 H 0.051 0.949 33 H 0.088 0.912 34 H 0.052 0.948 35 H 0.084 0.916 36 H 0.017 0.983 37 H 0.064 0.936 38 H 0.179 0.821 39 H 0.139 0.861 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.140 -20.699 -0.854 20.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.198 4.198 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.218 1.218 7 C -0.379 4.379 8 H 0.087 0.913 9 N -0.315 5.315 10 C 0.049 3.951 11 C 0.002 3.998 12 H 0.108 0.892 13 C -0.151 4.151 14 C -0.149 4.149 15 C -0.005 4.005 16 H 0.123 0.877 17 C 0.016 3.984 18 N -0.320 5.320 19 C 0.393 3.607 20 O -0.416 6.416 21 C -0.167 4.167 22 C -0.198 4.198 23 C -0.072 4.072 24 C -0.103 4.103 25 C -0.203 4.203 26 C -0.200 4.200 27 O 0.042 5.958 28 N -0.027 5.027 29 H 0.064 0.936 30 H 0.116 0.884 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.107 0.893 34 H 0.071 0.929 35 H 0.102 0.898 36 H 0.034 0.966 37 H 0.083 0.917 38 H 0.197 0.803 39 H 0.157 0.843 40 H 0.124 0.876 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.503 -19.795 -1.000 19.978 hybrid contribution -0.498 0.697 -0.026 0.857 sum 2.005 -19.098 -1.026 19.230 Atomic orbital electron populations 1.70019 1.05203 1.25450 1.54386 1.25028 0.95336 0.98329 1.01059 0.86200 0.79214 0.83935 0.77281 1.20279 1.21564 1.21806 1.19235 0.92070 0.84233 1.42344 0.91309 1.44402 1.30045 1.01108 1.55965 1.21536 0.88348 0.95599 0.89625 1.23348 0.97877 0.82889 0.95727 0.89225 1.22334 0.94041 1.01939 0.96751 1.22339 0.97985 0.98543 0.96007 1.23383 0.80695 1.00226 0.96166 0.87691 1.21384 0.98179 0.86668 0.92207 1.49065 1.14693 1.16182 1.52050 1.16389 0.84028 0.80260 0.80013 1.90760 1.20663 1.80346 1.49857 1.23550 0.91464 0.98590 1.03112 1.22301 1.02635 0.92103 1.02788 1.23358 0.86267 0.96432 1.01164 1.20416 0.98818 0.85280 1.05830 1.23089 1.00979 1.02901 0.93333 1.23118 1.02008 0.96821 0.98043 1.84762 1.33900 1.21483 1.55634 1.74224 1.20927 0.97780 1.09783 0.93566 0.88353 0.95655 0.93012 0.89294 0.92920 0.89751 0.96551 0.91733 0.80332 0.84285 0.87640 0.87563 0.87512 0.88117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.04 10.99 55.49 0.61 -25.43 16 2 C 0.00 0.02 5.00 -17.43 -0.09 -0.07 16 3 Si 0.90 21.31 29.58 -169.99 -5.03 16.29 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.25 -6.59 9.66 -15.06 -0.15 -6.74 16 8 H 0.07 1.78 7.86 -52.48 -0.41 1.36 16 9 N -0.59 -14.51 2.31 -170.10 -0.39 -14.90 16 10 C 0.17 4.24 4.63 -2.55 -0.01 4.23 16 11 C 0.10 2.14 4.08 -65.66 -0.27 1.87 16 12 H 0.09 1.81 7.93 -51.93 -0.41 1.40 16 13 C -0.11 -2.02 6.17 -25.25 -0.16 -2.17 16 14 C -0.11 -1.88 6.20 -25.11 -0.16 -2.03 16 15 C 0.10 1.84 3.83 -65.52 -0.25 1.59 16 16 H 0.11 1.82 5.53 -51.93 -0.29 1.53 16 17 C 0.14 3.05 6.03 -3.22 -0.02 3.03 16 18 N -0.59 -11.72 2.76 -153.79 -0.42 -12.14 16 19 C 0.61 12.17 7.95 -12.11 -0.10 12.08 16 20 O -0.54 -11.96 17.26 5.37 0.09 -11.87 16 21 C -0.01 -0.13 7.07 -82.53 -0.58 -0.72 16 22 C -0.18 -2.36 10.92 -39.08 -0.43 -2.79 16 23 C -0.01 -0.10 6.93 -35.35 -0.24 -0.35 16 24 C -0.08 -0.62 6.27 -91.77 -0.58 -1.19 16 25 C -0.17 -0.99 10.18 -26.74 -0.27 -1.27 16 26 C -0.16 -0.94 10.23 -26.74 -0.27 -1.22 16 27 O 0.12 1.53 10.96 17.27 0.19 1.72 16 28 N -0.33 -5.15 9.25 33.29 0.31 -4.84 16 29 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.10 2.58 6.27 -51.93 -0.33 2.25 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.09 1.71 7.83 -51.92 -0.41 1.31 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.08 1.48 7.84 -51.93 -0.41 1.07 16 36 H 0.02 0.38 8.14 -51.92 -0.42 -0.04 16 37 H 0.06 1.30 7.96 -51.93 -0.41 0.89 16 38 H 0.18 2.08 8.06 -52.49 -0.42 1.65 16 39 H 0.14 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.11 0.70 8.01 -51.93 -0.42 0.29 16 41 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 350.31 15.07 5.28 5.28 Total: -1.00 -31.60 350.31 -8.95 -40.56 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -6.02 Total: 1.08 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: -3.57 Total: 4.26 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: 0.10 Total: -57.32 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.28 Total: -10.15 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.60 -8.95 -40.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001017776884.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.258 kcal (2) G-P(sol) polarization free energy of solvation -31.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds